Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U598313 in the current build, Tomato 200607 #2

Unigene SGN-U346691

Unigene Basic Information

Unigene ID:	SGN-U346691
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	346691
mRNA sequence:	Length: 3252 bp

>SGN-U346691 Tomato 200607 #1 (1 members)
TTTAGTTTAGTTTTTACCTAGTAATGCTTCAAAAATTGAAACCATTGGAAGTCATAAGTCCCAGTTTGCTGGTATCTGCAAAACCTATCT
TGTTCCCTCCTACCTATTTTCGCTTTTTAATCAGTTTTTCATTTTAAAATTACAGAAAATCATGAGTTGGAAATTGGATTTTGTAGATAA
CCAAAGTTTAATGAGATAGGCATAGTCAGGTTTTGAGTTGGGATGACCTGATAGGGCAATTTTCTTCCATGAGAATAGGCTGATGGAAGT
AGATAATTGCTGGAACATAAGGTTGGTCAACTGTGTTATCATCTGCCTGGTGATATATATACAATCTGCCTTTGCACAAGAAGGATTTCT
AAGTATTCAGTGCTGTGCTACTGCAAACTTTACGGAACCACGTACCAACTTAAGTTGGATTTCAGATGGAATTTGGTTCCCTGAAAATCA
GAGTTGCATATCAAGGCCAGTGTACAAGAGTGAACACTATGAACGAGCTCGATCTTTTAGCTCAGACATTAGTCATAAGTGGTGTTACAG
CTTGCCAACCAGGAAAGAGCATGACTATCTAGTAAGAGGTACATTTCTTTCTGTCAAACAAGAGAAGACTCTCCCACATAGTTCTTTTGT
TGTTTTGATTGGTGTCACACCAATAGCCACAGTGAAGTCATCTGATGAACTTAAGGTTGAGGGAATTTTTAGAGCTACTAGAAGCTATAC
AAACTTCTGCCTATTGAAAAAGAAGGGGAATCCTTACATTTCTAAGGTTGAACTCAGACCGATAAATTCAGATTATCTCAAAAAGGAGCC
TTCAGAAATACTCAAACTTGTACATAGAGTAGATGCTGGAAATAAGGCTGCGGAAATCAGGTACCCATATGACCAGTACGATAGAATTTG
GAGACCAGCCTCAAATCTAGAATCACAAGTTACTCAAACGCCGCCATCCATTATTAAGCATGTCTTTGCAAGAAAACATAGTTTATTACC
TCCTGCATTCGTATTACGAACAGCCCTCACCCATCCAGAGAGATTGGACTTCTTGCATGAAGACCTTGACACAGGATATTATACTTACTC
TCTCTTCCTGTACTTTCTAGAGCCCAATGACTCAGTTCAAGCTGGAGAAAGGGTGTTCTATATATACATTAACAACGAAAAGAGACTTAA
GGTTGATATACTGGCTAGTGGTTCCAGATACCTGGATGTAGTTCTGAATTTCAGAGCAAATAGGTCTGTCAACCTGACAATGATCAAGGC
CTCAAATCTATCTCAATTGGGACCCATTTGTAATGGTTATGAGATTTTAAAGGCTCTTCCTCGTGTTAAAGAAACAGCCACTGAAGAAGT
TGACATAATGGCGAATGTCAAGAAGGAATTATTGCAACAAAACAAAAACAATGAAATATGGAAGAGTTGGTCAGGAGACCCTTGTCTTCC
CCTTCCCTGGCCGGGCCTAACTTGTGATCGAGTTAATGGTACTTCAGTCATCACTCAGATAGATCTCTCCTCAGGTGGCCTTAGTGGACC
TAGCCCTCCTAGCATCCAAAAACTGATGCACCTGAGAAAACTGAATATCAGCATTAATGGCTCTAGTGGCACAAATTCACTCTTTACATC
ATACTTCACATACTCTACAAGATACTTAAGCAGCAGGATTCATATTAGCAACAAGCTTTCTAGAAGCATAAAAGAATCTAATATTACAAC
AGACAAAGGGATGGCTAATGTTAAACAAAACTCAAGTTCAACACATAAACTTGTGATTGGAGCAGCTGTAGGTACAGCCCTCCTGGTGAT
CCTTGCAATTGTTATCTCTGTGGTCTGCCTCTTCAAAAGACGAGTAATGGCAGGACCAAAATTTCTTATGAGAAATTACTCGATCACAAG
GAATGCAGTATACTCAGTACCAAGCATGGATACTACCATGATGAAGTCAATATCCTCCAGGAACTTCAAATTGGAATATATAGAAGCTAT
TACTCAGAACTACAAAACTTTGATAGGTGAAGGTGGCTTTGGATCCGTTTACCGTGGTACCTTACCTGATGGTGTAGAAGTGGCTGTAAA
GGTCAGGTCAGCCACTTCGACTCAGGGAATTCGAGAATTCAATAACGAGCTTAACCTTCTGTCAGCTATCACACATGAGAACCTGGTCCC
TCTTATTGGCTACTGCTGCGAGAATGAACAGCAGATTCTGGTTTATCCATTTATGTCAAACAGCTCCCTACAGGATAGGTTATATGGAGG
AGCAGCAAAAAGGAAGATTCTAGACTGGCCGGCCAGACTTTCCATTGCGTTAGGAGCAGCGAGAGGTTTGCTGTACCTTCACACATTCTC
GGAGCGTTGTCTGATCCATAGGGACGTCAAGTCAAGCAACATACTCTTGGATCAGAGCATGTGTGCCAAGGTTGCTGATTTTGGATTTTC
AAAATATGCATCTCAAGAAGGGGATAGTGGTACTTCTTTAGAAGTAAGGGGGACAGCTGGGTACTTGGATCCAGAGTACTACTCGACCCA
ACGTCTGTCAGCAAAAAGTGATGTCTTCAGCTTTGGAGTTGTCCTACTGGAAATCCTCACAGGTCGAGAGCCTCTCAATATTAACAAGCC
AAGAAATGAGTGGAGCTTGGTTGAATGGGCGAAACCTCTAATAAGAAGCTCAAGAGTTGAAGAAATTGTGGATCCCACTATCAAGGGAGG
GTATCATGGTGAGGCGCTGTGGAGAGTGGTAGAGGTGGCTTTGGCATGCACAGAGACATACTCGACTTACAGACCATGCATGGCGGACAT
TGTAAGAGAGCTCGAGGATGCATTGATAATAGAAAATAATGCATCAGAATACTTGAAGTCCCTAGACAGCTTTGGAGGATCAAACCGTTT
CTCCGTAGAAAGGTCCATTGTCCTTCCACCTATTAAATCTCAAACAGAACCATCCAGTCTCCTCTCAAAACCAGCCCCTCCACAACCAAG
GTAAATGCTGTAGAGGAATGGATTTAAACTGATTGCAATAGATAACAGAATTCTTAGAAAAGTGTTTGGAATTTTTGCAAATTACTCCTC
AAATTCCTTTTAAGTTAAATCTCGTTAAACTGTTCATTCAGTAGAGCAGATTTTGTTATACATACCAGAGAACAGGAAACAGTGTTGTCA
AAGGTGTGCTTAAGCCCCAAAGTGAGGCATACTTTCCTTGCGATTGAGATCTTGAAGACTGATATTTCACTTTATCGTAAAAAAAATTCA
ATTTCTTTGTCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
SYMRK	symbiosis receptor-like kinase (SYMRK)

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E746665
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P276449 (915 Aa)

PDRAIFFHENRLMEVDNCWNIRLVNCVIICLVIYIQSAFAQEGFLSIQCCATANFTEPRTNLSWISDGIWFPENQSCISRPVYKSEHYER
ARSFSSDISHKWCYSLPTRKEHDYLVRGTFLSVKQEKTLPHSSFVVLIGVTPIATVKSSDELKVEGIFRATRSYTNFCLLKKKGNPYISK
VELRPINSDYLKKEPSEILKLVHRVDAGNKAAEIRYPYDQYDRIWRPASNLESQVTQTPPSIIKHVFARKHSLLPPAFVLRTALTHPERL
DFLHEDLDTGYYTYSLFLYFLEPNDSVQAGERVFYIYINNEKRLKVDILASGSRYLDVVLNFRANRSVNLTMIKASNLSQLGPICNGYEI
LKALPRVKETATEEVDIMANVKKELLQQNKNNEIWKSWSGDPCLPLPWPGLTCDRVNGTSVITQIDLSSGGLSGPSPPSIQKLMHLRKLN
ISINGSSGTNSLFTSYFTYSTRYLSSRIHISNKLSRSIKESNITTDKGMANVKQNSSSTHKLVIGAAVGTALLVILAIVISVVCLFKRRV
MAGPKFLMRNYSITRNAVYSVPSMDTTMMKSISSRNFKLEYIEAITQNYKTLIGEGGFGSVYRGTLPDGVEVAVKVRSATSTQGIREFNN
ELNLLSAITHENLVPLIGYCCENEQQILVYPFMSNSSLQDRLYGGAAKRKILDWPARLSIALGAARGLLYLHTFSERCLIHRDVKSSNIL
LDQSMCAKVADFGFSKYASQEGDSGTSLEVRGTAGYLDPEYYSTQRLSAKSDVFSFGVVLLEILTGREPLNINKPRNEWSLVEWAKPLIR
SSRVEEIVDPTIKGGYHGEALWRVVEVALACTETYSTYRPCMADIVRELEDALIIENNASEYLKSLDSFGGSNRFSVERSIVLPPIKSQT
EPSSLLSKPAPPQPR

SignalP predicts secretion with a score of 0.473

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P148727 (913 Aa)

RAIFFHENRLMEVDNCWNIRLVNCVIICLVIYIQSAFAQEGFLSIQCCATANFTEPRTNLSWISDGIWFPENQSCISRPVYKSEHYERAR
SFSSDISHKWCYSLPTRKEHDYLVRGTFLSVKQEKTLPHSSFVVLIGVTPIATVKSSDELKVEGIFRATRSYTNFCLLKKKGNPYISKVE
LRPINSDYLKKEPSEILKLVHRVDAGNKAAEIRYPYDQYDRIWRPASNLESQVTQTPPSIIKHVFARKHSLLPPAFVLRTALTHPERLDF
LHEDLDTGYYTYSLFLYFLEPNDSVQAGERVFYIYINNEKRLKVDILASGSRYLDVVLNFRANRSVNLTMIKASNLSQLGPICNGYEILK
ALPRVKETATEEVDIMAMSRRNYCNKTKTMKYGRVGQETLVFPFPGRGLTCDRVNGTSVITQIDLSSGGLSGPSPPSIQKLMHLRKLNIS
INGSSGTNSLFTSYFTYSTRYLSSRIHISNKLSRSIKESNITTDKGMANVKQNSSSTHKLVIGAAVGTALLVILAIVISXGLPLQKTSNG
RTKISYEKLLDHKECSILSTKHGYYHDEVNILQELQIGIYEAITQNYKTLIGEGGFGSVYRGTLPDGVEVAVKVRSATSTQGIREFNNEL
NLLSAITHENLVPLIGYCCENEQQILVYPFMSNSSLQDRLYGGAAKRKILDWPARLSIALGAAERFAVPSHILGALSDPWDVKSSNILLD
QSMCAKVADFGFSKYASQEGDSGTSLEVRGTAGYLDPEYYSTQRLSAKSDVFSFGVVLLEILTGREPLNINKPRNEWSLVEWAKPLIRSS
RVEEIVDPTIKGGYHGEALWRVVEVALACTETYSTYRPCMADIVRELEDALIIENNASEYLKSLDSFGGSNRFSVERSIVLPPIKSQTEP
SSLLSKPAPPQPR

SignalP predicts secretion with a score of 0.527

IPR001093 IMP dehydrogenase/GMP reductase
IPR000719 Protein kinase
IPR001245 Tyrosine protein kinase
IPR002290 Serine/threonine protein kinase

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101360	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	4049
2	118407	Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	1853
5	128958	Protein kinase-like Protein kinase - Molecular Function: protein kinase activity (GO:0004672) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein amino acid phosphorylation (GO:0006468)	116

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: