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Unigene SGN-U597181

Unigene Basic Information

Unigene ID:	SGN-U597181
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 159 bp

>SGN-U597181 Tomato 200607 #2 (1 members)
GGAATTCGGCTTTTTTTGCCCGGAGCTTTAGTGAATACTCTAAGTATTTAACAACGTGGTTTAGAACGAAGGTTTGTACGAAGGAAATGA
GTAATAAAGGAGATGTAAACAGCAGGTAGCACCACCAATGTGAGGTTGGATAATGGAAAGAAGGATAGC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ddtfr17	ripening regulated protein (DDTFR17)

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E747209
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (2)

Expression data for Unigene: SGN-U597181

Template:	Les.3822.1.A1_at
Platform:	Affymetrix GeneChip Tomato Genome Array
Experimental Design:	Expression data from various tomato plant tissues

Template:	Les.3822.1.S1_at
Platform:	Affymetrix GeneChip Tomato Genome Array
Experimental Design:	Expression data from various tomato plant tissues

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P687408 (36 Aa)

AILLSIIQPHIGGATAVYISFITHFLRTNLRSKPRC*

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P729171 (52 Aa)

YPSFHYPTSHWWCYLLFTSPLLLISFVQTFVLNHVVKYLEYSLKLRAKKAEF

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U346880	Tomato 200607 #1

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