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Searching for Motifs

Motifs Finder Tool
Usage:
1. Paste a sequence like in the example:
>gene_name
ATGGATCAGTCGGTGTTGGCGATCT
ACAGCTTGGCCAACTCCAGAAATTG
Or Upload a sequence file. It must be in FASTA format.
2. Enter motif width(s), a width for each motif must be entered. For multiple motifs, the widths are separated by commas; (16,20,...)
3. Enter expected sites, expected number of sites in each motif must be entered. For multiple motifs, the sites are separated by commas; (7,12,...)
Advance options help
- Number of seeds: the number of times that the sampler is restarted with separate initial models.
- Fragmentation: normally the sampler allows itself to flexibly change the width of the motif and to introduce spacers. You can turn it on by unchecking the Fragmentation checkbox.
- Reverse complement: the sampler normally samples in both forward and reverse complement. You can turn off reverse complement sampling by checking the Reverse complement checkbox.
Your Lists
Public Lists
List Contents
List Validation Report: Failed
Elements not found:
Optional: Add Missing Accessions to A List
Mismatched case
Click the Adjust Case button to align the case in the list with what is in the database.
Multiple mismatched case
Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.
List elements matching a synonym
Multiple synonym matches
Fuzzy Search Results
Synonym Search Results
Available Seedlots
Your Datasets
Public Datasets
Dataset Contents
Dataset Validation Failed
Elements not found:
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