Solanum lycopersicum mRNA Solyc00g007010.2.1
 mRNA details
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| Name | Type |
Length
2,286
|
Organism |
|
Description
Phosphatidylinositol phosphate (PtdInsP) phosphatase involved in hydrolysis of PtdIns (AHRD V1 **** D6VWZ1_YEAST); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal
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Location(s)
SL2.50ch00:6556570..6569989
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Length
- 13420
- Nb exon
- 21
- Sifter term
- GO:0004439
- GO:0043812
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc00g007010.2.1 Phosphatidylinositol phosphate (PtdInsP) phosphatase involved in hydrolysis of PtdIns (AHRD V1 **** D6VWZ1_YEAST); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal
GCGCCCAAATAATAGTGAAACTGAAAAAAGAAACCTTTTTTCTTCTTCTTCTCTCTAATTTATTCGATTTACTTTCTACTATTGCTGCCACTCTTGCTCCTTCTTGATTTTGGGTTGGCCTCAGCCTACCCTCACTGCCTCTATTGATTTTACTCCCTTGTTAGAACCACCCATTTTCTAGTTATTCGCAGATTCTCCATTCAGTGATTGAATTCCAATAATGATGGAGAAGGGAGATTCTTCACAGAAACTGTATAAACGGATGCGACTTTGGGAATTTCCAGACCAATATGTTGTTGAGCCTACTGATGGATCCTCTGGTTCATGTTTGGAAATTAGTCGTGTTGATGGGTCGATGAAACTAATAGATGAGATACCACATTGCAGTTCACTTCGTGTTCCCAAAATTCGGACAATTTTTGGAGTTATTGGGATTTTAAAGCTTTTGGCAGGATCATATTTATTGGTCATAACTGAACGCGAAAGTGTTGGATCTTACATGGGACACCCTATCTTTAAAGTTTCATCAATGAAGGTTTTCCCTTGTGATCATTCTCTCAAGAACACTCCTGTCGAACAGAAAAAAATGGAAGCTGAGTTTTCTGCCCTGCTAAATGTAGCAGAAAAGACTCCTGGTCTGTACTTCTCTTATGATGTCAATATAACATTGAGTGCTCAGCGATTGCATGATTTGGGTGATGAATCCAAGTTGCTTCCTCTATGGAGACAAGCAGACCCTCGGTTTCTTTGGAACAACTATATGATGGAAGTGCTAATAGATCACAAGCTCGACCCTTTCCTGCTTCCAGTTGTCCAAGGCAGTTTTCACAACTTTCAAGCAGCAATTGAGAAAGACATTGTTGATGTTACACTGATTGCAAGGAGGTGTAATAGGAGAACTGGCACTCGAATGTGGAGAAGAGGTGCCGATACTGATGGATTTGTTGCAAATTTTGTGGAAAGCGAGCAAATCATTCAGCTGAATGGATGTACTGCATCATTTGTTCAGGTCAGAGGGTCAATCCCACTACTGTGGGATCAGATTGTTGATTTGACATATAAACCTAAGTTTGAGATTGTGAGACTTGAAGAAGCACCTAGAGTAGCTGAGAGACACTTTTTGGACCTCAGAAAGAAATACGGAAATGTTCTAGCAGTTGATCTCGTCAACAAGCATGGAGGAGAAGGGCGTTTGAATGAAAAGTTTGCCAATGCAATGCAACATGTTGATGGTGATGATGTAAGATACTTGCACTTTGATTTTCACCATATATGCGGGCATGTTCATTTTGAGCGGCTTTCTATCCTTTATGATCAAATTGAGGATTTCTTCATAAAGAATAGGTACTTTTTGTTGAATGAGAAAGATGAAAAAATTGAGGTGCAACTTGGAGTTGTGAGGACCAACTGCATTGATTGCTTAGACCGAACAAATGTCACCCAGAGCATGCTTGGTCGCAGAATGTTGGAATTCCAACTCAGAAGACTTGGTATTTTTGATGCTGAAGAAACTATAAGCACACACTCCAACCTTGATGAGAGCTTCAAAATATTGTGGGCCAACCATGGAGATGATATAAGCATACAGTATTCTGGTACTCCAGCCCTAAAGGGAGATTTTGTCAGATTTGGTAAGAGAACAGTCCAAGGAATAGTCAATGATGGTCGCAATGCCCTAATGCGATACTACTTGAACAACTTTGTTGATGGCACTAAACAGGATGCAATCGATCTAATGCAAGGACATTACATTATGTCTGTCTCCCGAGATATGACGGCGACATCGCAGAAAGGAGGCATTGAAGCTATAGCTTCATTTCCTCTTGCCTTGGGACTGATTTTGACTGGCTTATTTTTTGCTACCTTGTCACTGGGGAGAGTTCGGAATGATGTTTGGAACTTATTATTTTCACTGATTTGGGCAAGCATAAGTTTGGCCATAGCTGCACTTGTGAAGGCCAATGGTCGCATGTTCTGTAACAGGCCTCGCCTGCACCAGTCAAGGCGTTGATTTATAAGTTTAAGATGCTGGATTAGTTGCCATATTTGTTGAAGTTGCTAGCTTTGCTAGTCAACATATTCATTTACTTTTGTATTCTTGGTAAGGAATCACAGTGCAATGGATTGGCTATAGATTTCTTTTTCTTGTTTTTTACCACTTGTGCTTTCATGTCATAACTTAGACCATTTCATTTCAGAGGGTTTAGCTACGAATGATTGTTTATAGATTGGAATTTTTGGTCCAATAATACTTTGTGAAGTCATACGAAAGAAATTTAACATTGG
GCGCCCAAATAATAGTGAAACTGAAAAAAGAAACCTTTTTTCTTCTTCTTCTCTCTAATTTATTCGATTTACTTTCTACTATTGCTGCCACTCTTGCTCCTTCTTGATTTTGGGTTGGCCTCAGCCTACCCTCACTGCCTCTATTGATTTTACTCCCTTGTTAGAACCACCCATTTTCTAGTTATTCGCAGATTCTCCATTCAGTGATTGAATTCCAATAATGATGGAGAAGGGAGATTCTTCACAGAAACTGTATAAACGGATGCGACTTTGGGAATTTCCAGACCAATATGTTGTTGAGCCTACTGATGGATCCTCTGGTTCATGTTTGGAAATTAGTCGTGTTGATGGGTCGATGAAACTAATAGATGAGATACCACATTGCAGTTCACTTCGTGTTCCCAAAATTCGGACAATTTTTGGAGTTATTGGGATTTTAAAGCTTTTGGCAGGATCATATTTATTGGTCATAACTGAACGCGAAAGTGTTGGATCTTACATGGGACACCCTATCTTTAAAGTTTCATCAATGAAGGTTTTCCCTTGTGATCATTCTCTCAAGAACACTCCTGTCGAACAGAAAAAAATGGAAGCTGAGTTTTCTGCCCTGCTAAATGTAGCAGAAAAGACTCCTGGTCTGTACTTCTCTTATGATGTCAATATAACATTGAGTGCTCAGCGATTGCATGATTTGGGTGATGAATCCAAGTTGCTTCCTCTATGGAGACAAGCAGACCCTCGGTTTCTTTGGAACAACTATATGATGGAAGTGCTAATAGATCACAAGCTCGACCCTTTCCTGCTTCCAGTTGTCCAAGGCAGTTTTCACAACTTTCAAGCAGCAATTGAGAAAGACATTGTTGATGTTACACTGATTGCAAGGAGGTGTAATAGGAGAACTGGCACTCGAATGTGGAGAAGAGGTGCCGATACTGATGGATTTGTTGCAAATTTTGTGGAAAGCGAGCAAATCATTCAGCTGAATGGATGTACTGCATCATTTGTTCAGGTCAGAGGGTCAATCCCACTACTGTGGGATCAGATTGTTGATTTGACATATAAACCTAAGTTTGAGATTGTGAGACTTGAAGAAGCACCTAGAGTAGCTGAGAGACACTTTTTGGACCTCAGAAAGAAATACGGAAATGTTCTAGCAGTTGATCTCGTCAACAAGCATGGAGGAGAAGGGCGTTTGAATGAAAAGTTTGCCAATGCAATGCAACATGTTGATGGTGATGATGTAAGATACTTGCACTTTGATTTTCACCATATATGCGGGCATGTTCATTTTGAGCGGCTTTCTATCCTTTATGATCAAATTGAGGATTTCTTCATAAAGAATAGGTACTTTTTGTTGAATGAGAAAGATGAAAAAATTGAGGTGCAACTTGGAGTTGTGAGGACCAACTGCATTGATTGCTTAGACCGAACAAATGTCACCCAGAGCATGCTTGGTCGCAGAATGTTGGAATTCCAACTCAGAAGACTTGGTATTTTTGATGCTGAAGAAACTATAAGCACACACTCCAACCTTGATGAGAGCTTCAAAATATTGTGGGCCAACCATGGAGATGATATAAGCATACAGTATTCTGGTACTCCAGCCCTAAAGGGAGATTTTGTCAGATTTGGTAAGAGAACAGTCCAAGGAATAGTCAATGATGGTCGCAATGCCCTAATGCGATACTACTTGAACAACTTTGTTGATGGCACTAAACAGGATGCAATCGATCTAATGCAAGGACATTACATTATGTCTGTCTCCCGAGATATGACGGCGACATCGCAGAAAGGAGGCATTGAAGCTATAGCTTCATTTCCTCTTGCCTTGGGACTGATTTTGACTGGCTTATTTTTTGCTACCTTGTCACTGGGGAGAGTTCGGAATGATGTTTGGAACTTATTATTTTCACTGATTTGGGCAAGCATAAGTTTGGCCATAGCTGCACTTGTGAAGGCCAATGGTCGCATGTTCTGTAACAGGCCTCGCCTGCACCAGTCAAGGCGTTGATTTATAAGTTTAAGATGCTGGATTAGTTGCCATATTTGTTGAAGTTGCTAGCTTTGCTAGTCAACATATTCATTTACTTTTGTATTCTTGGTAAGGAATCACAGTGCAATGGATTGGCTATAGATTTCTTTTTCTTGTTTTTTACCACTTGTGCTTTCATGTCATAACTTAGACCATTTCATTTCAGAGGGTTTAGCTACGAATGATTGTTTATAGATTGGAATTTTTGGTCCAATAATACTTTGTGAAGTCATACGAAAGAAATTTAACATTGG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc00g007010.2.1 | SL2.50ch00:6556844..6568908 | 583 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc00g007010.2 | SL2.50ch00:6556570..6569989 | 13,420 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc00g007010.2.1.1 | SL2.50ch00:6569786..6569989 | 204 | - | n/a |
| exon | exon:Solyc00g007010.2.1.10 | SL2.50ch00:6565552..6565658 | 107 | - | n/a |
| exon | exon:Solyc00g007010.2.1.11 | SL2.50ch00:6562760..6562846 | 87 | - | n/a |
| exon | exon:Solyc00g007010.2.1.12 | SL2.50ch00:6562587..6562664 | 78 | - | n/a |
| exon | exon:Solyc00g007010.2.1.13 | SL2.50ch00:6562284..6562354 | 71 | - | 1 |
| exon | exon:Solyc00g007010.2.1.14 | SL2.50ch00:6562108..6562206 | 99 | - | 1 |
| exon | exon:Solyc00g007010.2.1.15 | SL2.50ch00:6561052..6561151 | 100 | - | n/a |
| exon | exon:Solyc00g007010.2.1.16 | SL2.50ch00:6560159..6560267 | 109 | - | 2 |
| exon | exon:Solyc00g007010.2.1.17 | SL2.50ch00:6559905..6559977 | 73 | - | 1 |
| exon | exon:Solyc00g007010.2.1.18 | SL2.50ch00:6559316..6559409 | 94 | - | n/a |
| exon | exon:Solyc00g007010.2.1.19 | SL2.50ch00:6558892..6558984 | 93 | - | n/a |
| exon | exon:Solyc00g007010.2.1.2 | SL2.50ch00:6568803..6568966 | 164 | - | 2 |
| exon | exon:Solyc00g007010.2.1.20 | SL2.50ch00:6557537..6557603 | 67 | - | 2 |
| exon | exon:Solyc00g007010.2.1.21 | SL2.50ch00:6556570..6556975 | 406 | - | n/a |
| exon | exon:Solyc00g007010.2.1.3 | SL2.50ch00:6568622..6568705 | 84 | - | 2 |
| exon | exon:Solyc00g007010.2.1.4 | SL2.50ch00:6568148..6568275 | 128 | - | n/a |
| exon | exon:Solyc00g007010.2.1.5 | SL2.50ch00:6567953..6568044 | 92 | - | 1 |
| exon | exon:Solyc00g007010.2.1.6 | SL2.50ch00:6567000..6567057 | 58 | - | n/a |
| exon | exon:Solyc00g007010.2.1.7 | SL2.50ch00:6566792..6566848 | 57 | - | n/a |
| exon | exon:Solyc00g007010.2.1.8 | SL2.50ch00:6566676..6566709 | 34 | - | 2 |
| exon | exon:Solyc00g007010.2.1.9 | SL2.50ch00:6566483..6566563 | 81 | - | 2 |
| intron | intron:Solyc00g007010.2.1.10 | SL2.50ch00:6565659..6566482 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.11 | SL2.50ch00:6562847..6565551 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.12 | SL2.50ch00:6562665..6562759 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.13 | SL2.50ch00:6562355..6562586 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.14 | SL2.50ch00:6562207..6562283 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.15 | SL2.50ch00:6561152..6562107 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.16 | SL2.50ch00:6560268..6561051 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.17 | SL2.50ch00:6559978..6560158 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.18 | SL2.50ch00:6559410..6559904 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.19 | SL2.50ch00:6558985..6559315 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.2 | SL2.50ch00:6568967..6569785 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.20 | SL2.50ch00:6557604..6558891 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.21 | SL2.50ch00:6556976..6557536 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.3 | SL2.50ch00:6568706..6568802 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.4 | SL2.50ch00:6568276..6568621 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.5 | SL2.50ch00:6568045..6568147 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.6 | SL2.50ch00:6567058..6567952 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.7 | SL2.50ch00:6566849..6566999 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.8 | SL2.50ch00:6566710..6566791 | n/a | - | n/a |
| intron | intron:Solyc00g007010.2.1.9 | SL2.50ch00:6566564..6566675 | n/a | - | n/a |
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