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Solanum lycopersicum mRNA Solyc01g005960.2.1

mRNA details  
Name
Solyc01g005960.2.1
Type
mRNA
Length
2,536
Organism
Solanum lycopersicum
Description
ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch01:625583..632996
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005524
Length
7414
Nb exon
7
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g005960.2.1 ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

TAGGCAAAAATTTAGGCTAGCCGCAATCAAGAACTGTGTATACATAACGTACGGAGAAGTCTCAATTCTCTCCACTGGCTGATTTGAGACTTGGGGAATTTGAATTTGATTTGATGATGACGAAAGTTGCTGGGTTTTGATCTGAAATTTTTGTTTTGGGGAGGTTAAGTAGCTTGGATTTGTAAAATTAGCTGAAATTTTGGTTTTAGGGGTATCTTCTTTGTTTTTTTTTTTTTTTGTTTTTTTTTTTGGTAACTTGAGGGAAGGTAAAGAGTGTGTGATCTTTGGGTATTTTGACTATGTCAATGTCGTGGGCTGATTCTGTTTCTGCAGCCGAGAATCCGGCTGGAGCTCCGTCTAAGTCAGCATATGTTCCACCACATTTGCGAAACAGACCTTCAACTGATCCTCCTGCACAGGCTTCGTATGCTGGGGCTGCTGCATCATTAGGTAATGACCATAGTGGTTATGGTGTCCCAAATATGGTTGGGAGTCGTTGGAGTGGTCAAAGGAATGAATACCAATCTGGTTATGCTGGTGGAGGAGGACGTGGTGGTGGTTGGAATGGAAGAAGTGGTGGTTGGGATCGTGGGAGGGTTCGGGAAGTTAACCCCTTTACAAATGATGATAGTGAACCTGTTACTGAACAAGAAAGTTCTGCGATCAATTTTGATGCATATGAGGATATTCCAGTGGAAACAAGCGGGGATAATGTGCCCCCTCCTGTGAATACTTTTGCAGAGATTGATTTAGGTGAAGCTGTCAATGAAAATATAAGGAGGTGCAAGTATGTTAAGCCGACCCCTGTGCAACGGCATGCTATACCTATTTCACTCGCAGGGAGGGATTTGATGGCTTGTGCTCAGACTGGTTCTGGAAAAACTGCTGCTTTCTGCTTCCCAATCATAAGTGGGATCATGAGGGGCCAATTTCCTAGACCTCCTCGTCCACGTATGGCATTTCCTCTAGCTCTTATTCTCTCCCCGACTAGGGAGCTCTCATGCCAAATTCATGACGAGGCTAAAAAGTTTTCATATCAAACTGGCGTCAGGGTGGTTGTTGCCTATGGTGGTGCTCCTATAAACCAACAGCTTCGTGAGTTAGAGAGAGGTGTGCATATTCTTGTAGCAACCCCTGGACGGTTGGTAGATTTACTTGAGAGAGCAAGAGTCTCGTTGCAGATGATAAGGTATTTGGCTCTAGACGAGGCTGACCGGATGCTTGACATGGGTTTTGAACCTCAAATAAGGAAAATAGTGCAACAGATGGACATGCCTCCGCCAGGTGTGCGACAGACCATGCTTTTCAGTGCCACTTTTCCAAAAGAGATTCAGAGACTGGCCTCAGATTTTCTATCCAGTTATATCTTTTTGGCCGTCGGAAGGGTCGGCTCTAGCACAGATTTGATTGTCCAACGAGTTGAATATGTTCAAGAGACTGACAAGAGAAGTCACTTGATGGATCTTCTTCATGCGCAGAAGGAAAATGGTGTTCATGGCAAGCAAGCTCTTACCCTTGTTTTTGTGGAGACTAAGAAGGGAGCTGATGCACTGGAGCATTGGCTTTGTATGAATGGTTTCCCTGCTGCTGCTATTCATGGTGATAGAACTCAGCAGGAGAGAGAGCATGCCCTCAGATCCTTCAAAACTGGTTACACACCAATCTTGGTTGCAACAGATGTGGCAGCACGTGGTCTCGATATCCCCCATGTTGCACATGTTGTTAACTTTGATCTGCCAAATGACATTGATGACTATGTGCACCGTATTGGAAGAACTGGACGAGCAGGAAAAACAGGTTTAGCTACTGCCTTCTTCAACGAGAACAATTCTTCACTTGCAAGATCACTATCCGACCTGATGCAAGAAGCAAACCAAGAAGTACCTGCTTGGCTCTCTCGCTTTGCTGCTCGATCCACTTATGGAGGCAAGAATCGTCGTGGTGGAGCTCGTTTTGGTGCTCGTGACTTTCGAAGAGATTCCTCTTATAACCGAGGTGCTAGTGGTGGTTCTACCGACTATTATGGTGGTGGTGCCAATATGAACAGTGGCTATGCATCTGGGGGGTATAATGCATCGTATGGAACAGCAGGCGTGACCAGTGCATGGGACTAACCAGCCTCATTTCGCCCCACTAGCTAATTCAGTTGTACTTTCAAGTTCTACTCTAGCAAAACTACTCACTTTAGAGGTTACTCTTGCTATTCCTCACTCTTGTTAGTTTCTCTTCCGTTGTACTCGAGTTTTTACTTTCCATGGTGGTGTTGTCGTTCGTGACATATAGTTCAGGGCTCTAGGGGATGCGTAAATCTTGGCAGGTCCGCGGCAAATAATGACTAACACATTAGGAATTTTTTGCCTCATTAGAAATGTGGTTTATACTTCTCTTAACTCAATTTTGTTGGTTGTAGATCTCTTCTGCAGAGCCCTTTGAACCAAATGTTTGAAGTTATGTTTCTACTTTAGTCAGTACTGTTGTAATATTCTGAAGTCTTTCTTATTAATCAAATTTTCTATTTTATACATATTAGAGAAAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g005960.2.1SL2.50ch01:626618..632574605+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g005960.2SL2.50ch01:625583..6329967,414+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g005960.2.1.1SL2.50ch01:625583..62565977+n/a
exonexon:Solyc01g005960.2.1.2SL2.50ch01:626397..627326930+n/a
exonexon:Solyc01g005960.2.1.3SL2.50ch01:627472..62755584+n/a
exonexon:Solyc01g005960.2.1.4SL2.50ch01:628808..629050243+n/a
exonexon:Solyc01g005960.2.1.5SL2.50ch01:629375..629542168+n/a
exonexon:Solyc01g005960.2.1.6SL2.50ch01:630155..630268114+n/a
exonexon:Solyc01g005960.2.1.7SL2.50ch01:632077..632996920+n/a
intronintron:Solyc01g005960.2.1.1SL2.50ch01:625660..626396n/a+n/a
intronintron:Solyc01g005960.2.1.2SL2.50ch01:627327..627471n/a+n/a
intronintron:Solyc01g005960.2.1.3SL2.50ch01:627556..628807n/a+n/a
intronintron:Solyc01g005960.2.1.4SL2.50ch01:629051..629374n/a+n/a
intronintron:Solyc01g005960.2.1.5SL2.50ch01:629543..630154n/a+n/a
intronintron:Solyc01g005960.2.1.6SL2.50ch01:630269..632076n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17667027%2Fdetails feature 17667027
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