Solanum lycopersicum mRNA Solyc01g028900.2.1

mRNA details  
Name
Solyc01g028900.2.1
Type
mRNA
Length
1,491
Organism
Solanum lycopersicum
Description
1-deoxy-D-xylulose-5-phosphate synthase (AHRD V1 **-- DXS_DESAP); contains Interpro domain(s) IPR005475 Transketolase, central region
Location(s)
SL2.50ch01:40835395..40845211
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0008152
Length
9817
Nb exon
13
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g028900.2.1 1-deoxy-D-xylulose-5-phosphate synthase (AHRD V1 **-- DXS_DESAP); contains Interpro domain(s) IPR005475 Transketolase, central region

TATTTACGTTCCATTTTATTATTACTTTATATTTATAAATAAAGAGACATTGAATTGGGGAGTGCATACCCAACTCTATAATAGATGCTTTGACTTTGAATCTCAATTGTGCTTCTCTTGTTCAGATTCCAACATTCTTGAGAGAAAGTTCAAAGAAAATGGGTAGCAATTTCAGAAGAATTGGGAAATTGGCTGCAATTTCATCCAAAAATCAAAGTTGTATGGGATTTTCCTCAACAGTTAACAAAAATGACACTTCCACCAAATCTGTCAACCTTTTCTCTGCTATTAATCAAGCTCTTCACATCGCTTTAGACTCTGATCCTCGTTCTTATGTATTTGGAGAAGATGTTGGTTTTGGTGGTGTCTTTCGTTGCACTACTGGGCTAGCTGACCGATTTGGTAAACAGAGGGTCTTTAACACTCCTCTGTGTGAGCAGGGCATAGTTGGATTTGCGATTGGTCTTGCTGCAATGGACAATCGAGCTGTAGCAGAAATTCAATTTGCAGATTATATATTTCCTGCTTTTGATCAGATTGTCAATGAAGCTGCGAAATTCAGATACCGGAGTGGTAACCAGTTCAACTGCGGAGGTTTAACTATAAGAGCACCTTATGGAGCTGTTGGACATGGTGGGCATTACCACTCTCAATCCCCTGAATCTTTCTTCTGCCATGTTCCTGGTATAAAGGTGGTCATCCCACGCAGTCCACAGCAAGCAAAAGGATTGCTGTTGTCAAGCATACGTGACCCAAATCCAGTTGTTTTTTTTGAACCAAAGTTGCTTTACCGGATGGCTGTTGAAGAAGTTCCTAAAGATGATTATATGTTGCCTCTATCTGAGGCAGAGGTCCTCAGGGAAGGTACTGATATCACATTAGTTGGTTGGGGAGCTCAGCTATCTATTATGGAGCAGGCATGTGTAGAAGCTGCAAAGGAGGGGATCTCTTGTGAACTGATAGACCTTAAAACTTTAATACCTTGGGACAAGGAAACGGTAGAGGCCTCTGTCAAAAAGACAGGAAGGCTGCTGATTAGTCATGAAGCTCCTGTGACAGGTGGATTTGGTGCTGAAATATCTGCATCTATAGTTGAACGTTGCTTCACGAGATTAGAAGCTCCAGTGGCCAGAGTGTGTGGGTTAGATACTCCTTTTCCTCTGGTGTTTGAGCCCTTCTACTTGCCTACAACGAACAAGATACTGGATGCAATCAAATCTACTGTGAGTTACTAGTGCTCATTCAGTCGTGCAGAGATGCTGGAGTGTTATAGTAGTGAATATATATATGTATTGCCATAGATTATGATTCGGGGTTTCTCTATTAACATACATATATAAAACACTGTTATTAATAGCTTATGCAACCAAAAAAGGTCATGTATTTATTTACTCCTCTGGCACTTGGCTCACTGCTCACTGCTTTCTGTTTGGTGCACAAGGGTACGCTGCTTGCTTTGTTGAATCATAGGTTATCCTGTTGTCACAATTC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g028900.2.1SL2.50ch01:40835552..40844955359+n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g028900.2SL2.50ch01:40835395..408452119,817+n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g028900.2.1.1SL2.50ch01:40835395..40835722328+1
exonexon:Solyc01g028900.2.1.10SL2.50ch01:40840831..4084092696+n/a
exonexon:Solyc01g028900.2.1.11SL2.50ch01:40841005..4084108278+n/a
exonexon:Solyc01g028900.2.1.12SL2.50ch01:40844748..4084483487+n/a
exonexon:Solyc01g028900.2.1.13SL2.50ch01:40844920..40845211292+n/a
exonexon:Solyc01g028900.2.1.2SL2.50ch01:40836960..40837071112+n/a
exonexon:Solyc01g028900.2.1.3SL2.50ch01:40837259..4083729436+n/a
exonexon:Solyc01g028900.2.1.4SL2.50ch01:40837384..4083744360+n/a
exonexon:Solyc01g028900.2.1.5SL2.50ch01:40837519..4083757658+2
exonexon:Solyc01g028900.2.1.6SL2.50ch01:40837661..4083775898+n/a
exonexon:Solyc01g028900.2.1.7SL2.50ch01:40839848..4083993790+n/a
exonexon:Solyc01g028900.2.1.8SL2.50ch01:40840021..4084008969+n/a
exonexon:Solyc01g028900.2.1.9SL2.50ch01:40840479..4084056587+n/a
intronintron:Solyc01g028900.2.1.10SL2.50ch01:40840566..40840830n/a+n/a
intronintron:Solyc01g028900.2.1.11SL2.50ch01:40840927..40841004n/a+n/a
intronintron:Solyc01g028900.2.1.12SL2.50ch01:40841083..40844747n/a+n/a
intronintron:Solyc01g028900.2.1.13SL2.50ch01:40844835..40844919n/a+n/a
intronintron:Solyc01g028900.2.1.2SL2.50ch01:40835723..40836959n/a+n/a
intronintron:Solyc01g028900.2.1.3SL2.50ch01:40837072..40837258n/a+n/a
intronintron:Solyc01g028900.2.1.4SL2.50ch01:40837295..40837383n/a+n/a
intronintron:Solyc01g028900.2.1.5SL2.50ch01:40837444..40837518n/a+n/a
intronintron:Solyc01g028900.2.1.6SL2.50ch01:40837577..40837660n/a+n/a
intronintron:Solyc01g028900.2.1.7SL2.50ch01:40837759..40839847n/a+n/a
intronintron:Solyc01g028900.2.1.8SL2.50ch01:40839938..40840020n/a+n/a
intronintron:Solyc01g028900.2.1.9SL2.50ch01:40840090..40840478n/a+n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17675449%2Fdetails feature 17675449
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)