Solanum lycopersicum mRNA Solyc01g068280.2.1
 mRNA details
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| Name | Type |
Length
3,787
|
Organism |
|
Description
Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--- CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related
|
|
Location(s)
SL2.50ch01:77413747..77427671
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| Ontology term(s) |
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GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0005524
- Length
- 13925
- Nb exon
- 27
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc01g068280.2.1 Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--- CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related
ATGTCGAAATCCCAGCAGCAACCTCGAAGCCTTAATCAACGCCATAATCAGATTCTCATTAGCCTTTCTGCTTCGCATTCTAAACCTCCTCCAGATGATATGACAAAATTGGAAGCTAGGCGAGGTTTAAATCAAAATGACGACTTTCCCACTTTCTCTTTTACTATTGATTCCGATTCTTCTCCTTCTCCAGTTCGATTTTCTTCAAATGGTATAGGAAACGACGCCGTTCCTAGTTTTTCTGGGATTGCTGATTTCAGTCCTGATCCTGAGCCTTCTGGAGAGGTGGAAGAGATTAACGATCAATCGACTTTTGAGAACGACGTTGTTGATTTCAGTCCAGATTCGGCTAAATCTTCTCCCTTAGGGGGGAATGAGATTGATGAATCAAAGCATGAAATTCAAGAGGAATTAAGTGATCAACCCAAGGATTATTCCGATTATCAGAGTCCTGGAAATGGGTTGAAGGAGATTGATGAAACCGAGAATGGAATTCAAGAGGAATTAAGTAACCCACCTGAGAATTCTTTTGATTCTCTTGATAGTTTGTCTTTTTCTGGGAAAAAGGAGATTGATCAACCCACGAGTGGAACCAAAGAGGACCCACTATTATCTAAAATTGTTGATAACAGTTCTTCCCTATCTGTAGATATGGAAAGGTCCGAACATGTGCGTGAAAACTGTGAACTCTCTCAGGAAGGCCAGGAAGATTACGAGAAAACATCAAACGAAGGAGAGGAGAAAATAACGAAGGTGAAGATCAAAGGTCGTCGCCGCCTTTGCAAAATTTCAGAGGATAACAATGACAGTGAGGAAATGAAGCTTAAGGATGATGAAGAGTCCGGACTTCTCGGCATAACAGATTTTGATTCACCTCCTTGTCAGGTGAAAAGTGCAGTTCAGAATGAACATGGTGGTTCTGGGAACGAAATAAGGGATATCCTGAATGATTTAAGTTCAAGACTTGAGATTTTGTCCATTGAGAAAAAGAGGGCACCGAAGCCCCATGATTTGACTAAGAAGAATGAAATTCCGGAATACCAAAGTGCTGGTTCCTCATTTTCACTTTCTTCTGGTTCCTCATCTGATTCAACCAAGGAATCTAGGATTGGAGGAGAAATTCCCAAGGAGTATCTGAAGAAGATCGATTCAGGGACTGCATCTAACAACAATTGTGTCGTCCATAAGTTCAATGATACAAGATCTTCTGTTGGAGCACCAAAGAGGAAAGAAGTTAAGCAGATGACTGGAAAATCACAGCCCATGAAGAACACTATTTCTGCCTACAAATTCCTGGAAGAAGGAGACGCTAATGACAGTGATGATGATTGTGTGGTTGTTGGTGACGAGAGTGCTGTCACTCAAGTGGGAAGACATAACAGGAAGACTAGACATGAGCATAAACATTCAGATGACTTTGATTCACATGATTTTGTTTCAGAGGAGGATCACACTTACACACTCAGTGGACCAAAGTTCAATTATGGGTTACCTGGTAAAATTACCAAAATGCTGTATCCTCACCAACGTGAAGGTTTGAAGTGGCTTTGGTCTCTTCACTGTCTGGGTAAGGGTGGAATTTTAGGCGATGACATGGGTTTGGGGAAGACCATGCAGATATGCGGCTACTTAGCTGGATTGTTTTATTCAAAGTTGATTAAGAGAGTGTTGATTGTTGCTCCCAAAACTTTGTTACCCCATTGGATCAAGGAATTAACTGCTGTAGGCCTTTCTCAGAAAATTAGGGAATATTTTGCGACTAGTGCAAAACTCCGAAATTATGAGCTTCAATACGTTCTTCAGGACAAAGGCATTCTCCTGACAACATACGACATTGTAAGAACCAATGTGAAGTCTTTATGTGGTGATCAGTATTATGAAGACAGAGATGAGGAGTTGACATGGGATTATATGATTCTTGATGAGGGACATCTCATAAAGAATCCCAGTACACAGAGGGCTAAAAGTTTGCATGAGATTCCTTGTGCTCATCGTATCATAATAAGTGGCACGCCTCTTCAAAACCACCTCAAGGAGTTATGGGCGCTATTCAACTTCTGCTGCCCTGGGCTGCTGGGCGACAAACAATGGTTCAAAGAGAAATATGAGCATCTCATTCTTCGTGGAAATGATAAAAATGCTTATGACAGAGACAAGCGTATTGGCTCAGCAGTTGCGAAGGAATTGAGGGAACACATTCAACCATATTTTCTGCGACGTCTCAAGAGTGAGGTATTTTCTGATGATTCCTCGACCAGCGCAAAACTTTCCAAGAAAAATGAGATTATTGTGTGGCTTAAATTGACAAATTGTCAGCGGCAACTCTACACAGCTTTCTTGAAGAGTGAGATTGTCCTGTCATCCTTTGATAGGTCTCCGCTGGCTGCACTTACTATCTTAAAGAAAATATGTGACCATCCACTACTACTAACAAAGAGGGCAGCAGAAGAAGTTCTTGAAGAGATGGATTCAACCTCAAACCATGATGACCGTGCTGTGGCAGAGAGATTGGTTATGCAAATGGCAAATGTGTCTGAGAAACTTGAAGAGGAAGTAGTATCACATGATGTTTCCTGCAAGATAACATTTATACTGGCTTTGTTGGACAATTTGATTCCCGGCGGGCACAATGTGCTCATCTTTTCTCAAACACGCAAGATGCTTAATCACCTCCAAGACGCTTTAATATCCAATGGGTTCCAGTTCATGAGGATAGATGGAACCACCAAAGCTACTGACAGATTGAAGATTGTTAATGAATTCCAAGAGGGTCATGGTGCTCCAATATTTCTTTTAACTTCTCAAGTTGGTGGTCTAGGTCTTACACTCACAAGAGCAGATCGAGTGATTGTTGTTGATCCAGCATGGAATCCAAGCATGGATAATCAAAGTGTTGACCGCGCCTACAGAATTGGGCAGACCAAGGATGTTGTTGTATATAGACTGATGACTACTGGCACAGTTGAAGAGAAGATCTATAGGAAACAGGTATACAAAGGGGGATTGTTCAAAACAGCAACTGAGCACAAAGAACAAATCCGTTATTTCAGTCAACAGGATCTTAGGGAACTCTTCAGCCTTCCCAAAGATGGTGGTTTTGACATATCAAATACTCAGAAACAGTTGAATGAAGAGCATGATCATGAGCACAAAATGGAAGAGACTCTAAAGGCCCATGTAAAGTTTTTGGAGACTCTGGGTATAGCTGGAGTTAGCAGCCATAGTTTGCTTTTCTCAAAGACAGCGCCTGTATCAGCTGTCCAAGATGAGGATGAAGTGAAAATTGCACGAGAGAGGATGACATACATTGGGAACTCATCATCATACACATCAGTTGAACGTCCTGTTGATGCGAGTCAGTATGCTTTTAAGCCAAAGGACGTGAATTTACAGAGGAAGTCTGTACCTACTGCTAGAGTTGGTCGTACAGAATCTCAAATCCAGGATGACCTGAGGCGGTGTTACAGAATGCTTGCGGATAAGGAAAAGATATCCAAGTTATTTGATAATGGGCAGAAGTTACAAGGTCGAATTGCTCATCTGCGTGAGGAGCTGGAGACTATTCGAATGAAAAAGGACAACAAGAATGAAATCATTGACTTAGATGATGACATATCTGAACAATTTGACAGGGCTGTTAATGTGTAAATATTGCTCTATTTTCATATCCAACTTTTTTGTCACTTCAAAGTGTGGAGCATTTTTTGTTTACTTTTTGGGTAAACACTTGTATGTAATTAATTAGTTGGAGATATTTTCAATTAATACATTTAACCTTTTTGGTCTT
ATGTCGAAATCCCAGCAGCAACCTCGAAGCCTTAATCAACGCCATAATCAGATTCTCATTAGCCTTTCTGCTTCGCATTCTAAACCTCCTCCAGATGATATGACAAAATTGGAAGCTAGGCGAGGTTTAAATCAAAATGACGACTTTCCCACTTTCTCTTTTACTATTGATTCCGATTCTTCTCCTTCTCCAGTTCGATTTTCTTCAAATGGTATAGGAAACGACGCCGTTCCTAGTTTTTCTGGGATTGCTGATTTCAGTCCTGATCCTGAGCCTTCTGGAGAGGTGGAAGAGATTAACGATCAATCGACTTTTGAGAACGACGTTGTTGATTTCAGTCCAGATTCGGCTAAATCTTCTCCCTTAGGGGGGAATGAGATTGATGAATCAAAGCATGAAATTCAAGAGGAATTAAGTGATCAACCCAAGGATTATTCCGATTATCAGAGTCCTGGAAATGGGTTGAAGGAGATTGATGAAACCGAGAATGGAATTCAAGAGGAATTAAGTAACCCACCTGAGAATTCTTTTGATTCTCTTGATAGTTTGTCTTTTTCTGGGAAAAAGGAGATTGATCAACCCACGAGTGGAACCAAAGAGGACCCACTATTATCTAAAATTGTTGATAACAGTTCTTCCCTATCTGTAGATATGGAAAGGTCCGAACATGTGCGTGAAAACTGTGAACTCTCTCAGGAAGGCCAGGAAGATTACGAGAAAACATCAAACGAAGGAGAGGAGAAAATAACGAAGGTGAAGATCAAAGGTCGTCGCCGCCTTTGCAAAATTTCAGAGGATAACAATGACAGTGAGGAAATGAAGCTTAAGGATGATGAAGAGTCCGGACTTCTCGGCATAACAGATTTTGATTCACCTCCTTGTCAGGTGAAAAGTGCAGTTCAGAATGAACATGGTGGTTCTGGGAACGAAATAAGGGATATCCTGAATGATTTAAGTTCAAGACTTGAGATTTTGTCCATTGAGAAAAAGAGGGCACCGAAGCCCCATGATTTGACTAAGAAGAATGAAATTCCGGAATACCAAAGTGCTGGTTCCTCATTTTCACTTTCTTCTGGTTCCTCATCTGATTCAACCAAGGAATCTAGGATTGGAGGAGAAATTCCCAAGGAGTATCTGAAGAAGATCGATTCAGGGACTGCATCTAACAACAATTGTGTCGTCCATAAGTTCAATGATACAAGATCTTCTGTTGGAGCACCAAAGAGGAAAGAAGTTAAGCAGATGACTGGAAAATCACAGCCCATGAAGAACACTATTTCTGCCTACAAATTCCTGGAAGAAGGAGACGCTAATGACAGTGATGATGATTGTGTGGTTGTTGGTGACGAGAGTGCTGTCACTCAAGTGGGAAGACATAACAGGAAGACTAGACATGAGCATAAACATTCAGATGACTTTGATTCACATGATTTTGTTTCAGAGGAGGATCACACTTACACACTCAGTGGACCAAAGTTCAATTATGGGTTACCTGGTAAAATTACCAAAATGCTGTATCCTCACCAACGTGAAGGTTTGAAGTGGCTTTGGTCTCTTCACTGTCTGGGTAAGGGTGGAATTTTAGGCGATGACATGGGTTTGGGGAAGACCATGCAGATATGCGGCTACTTAGCTGGATTGTTTTATTCAAAGTTGATTAAGAGAGTGTTGATTGTTGCTCCCAAAACTTTGTTACCCCATTGGATCAAGGAATTAACTGCTGTAGGCCTTTCTCAGAAAATTAGGGAATATTTTGCGACTAGTGCAAAACTCCGAAATTATGAGCTTCAATACGTTCTTCAGGACAAAGGCATTCTCCTGACAACATACGACATTGTAAGAACCAATGTGAAGTCTTTATGTGGTGATCAGTATTATGAAGACAGAGATGAGGAGTTGACATGGGATTATATGATTCTTGATGAGGGACATCTCATAAAGAATCCCAGTACACAGAGGGCTAAAAGTTTGCATGAGATTCCTTGTGCTCATCGTATCATAATAAGTGGCACGCCTCTTCAAAACCACCTCAAGGAGTTATGGGCGCTATTCAACTTCTGCTGCCCTGGGCTGCTGGGCGACAAACAATGGTTCAAAGAGAAATATGAGCATCTCATTCTTCGTGGAAATGATAAAAATGCTTATGACAGAGACAAGCGTATTGGCTCAGCAGTTGCGAAGGAATTGAGGGAACACATTCAACCATATTTTCTGCGACGTCTCAAGAGTGAGGTATTTTCTGATGATTCCTCGACCAGCGCAAAACTTTCCAAGAAAAATGAGATTATTGTGTGGCTTAAATTGACAAATTGTCAGCGGCAACTCTACACAGCTTTCTTGAAGAGTGAGATTGTCCTGTCATCCTTTGATAGGTCTCCGCTGGCTGCACTTACTATCTTAAAGAAAATATGTGACCATCCACTACTACTAACAAAGAGGGCAGCAGAAGAAGTTCTTGAAGAGATGGATTCAACCTCAAACCATGATGACCGTGCTGTGGCAGAGAGATTGGTTATGCAAATGGCAAATGTGTCTGAGAAACTTGAAGAGGAAGTAGTATCACATGATGTTTCCTGCAAGATAACATTTATACTGGCTTTGTTGGACAATTTGATTCCCGGCGGGCACAATGTGCTCATCTTTTCTCAAACACGCAAGATGCTTAATCACCTCCAAGACGCTTTAATATCCAATGGGTTCCAGTTCATGAGGATAGATGGAACCACCAAAGCTACTGACAGATTGAAGATTGTTAATGAATTCCAAGAGGGTCATGGTGCTCCAATATTTCTTTTAACTTCTCAAGTTGGTGGTCTAGGTCTTACACTCACAAGAGCAGATCGAGTGATTGTTGTTGATCCAGCATGGAATCCAAGCATGGATAATCAAAGTGTTGACCGCGCCTACAGAATTGGGCAGACCAAGGATGTTGTTGTATATAGACTGATGACTACTGGCACAGTTGAAGAGAAGATCTATAGGAAACAGGTATACAAAGGGGGATTGTTCAAAACAGCAACTGAGCACAAAGAACAAATCCGTTATTTCAGTCAACAGGATCTTAGGGAACTCTTCAGCCTTCCCAAAGATGGTGGTTTTGACATATCAAATACTCAGAAACAGTTGAATGAAGAGCATGATCATGAGCACAAAATGGAAGAGACTCTAAAGGCCCATGTAAAGTTTTTGGAGACTCTGGGTATAGCTGGAGTTAGCAGCCATAGTTTGCTTTTCTCAAAGACAGCGCCTGTATCAGCTGTCCAAGATGAGGATGAAGTGAAAATTGCACGAGAGAGGATGACATACATTGGGAACTCATCATCATACACATCAGTTGAACGTCCTGTTGATGCGAGTCAGTATGCTTTTAAGCCAAAGGACGTGAATTTACAGAGGAAGTCTGTACCTACTGCTAGAGTTGGTCGTACAGAATCTCAAATCCAGGATGACCTGAGGCGGTGTTACAGAATGCTTGCGGATAAGGAAAAGATATCCAAGTTATTTGATAATGGGCAGAAGTTACAAGGTCGAATTGCTCATCTGCGTGAGGAGCTGGAGACTATTCGAATGAAAAAGGACAACAAGAATGAAATCATTGACTTAGATGATGACATATCTGAACAATTTGACAGGGCTGTTAATGTGTAAATATTGCTCTATTTTCATATCCAACTTTTTTGTCACTTCAAAGTGTGGAGCATTTTTTGTTTACTTTTTGGGTAAACACTTGTATGTAATTAATTAGTTGGAGATATTTTCAATTAATACATTTAACCTTTTTGGTCTT
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
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| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc01g068280.2.1 | SL2.50ch01:77413885..77427671 | 1,216 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc01g068280.2 | SL2.50ch01:77413747..77427671 | 13,925 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc01g068280.2.1.1 | SL2.50ch01:77427578..77427671 | 94 | - | 2 |
| exon | exon:Solyc01g068280.2.1.10 | SL2.50ch01:77424862..77424992 | 131 | - | 1 |
| exon | exon:Solyc01g068280.2.1.11 | SL2.50ch01:77424709..77424763 | 55 | - | n/a |
| exon | exon:Solyc01g068280.2.1.12 | SL2.50ch01:77424025..77424147 | 123 | - | n/a |
| exon | exon:Solyc01g068280.2.1.13 | SL2.50ch01:77423493..77423600 | 108 | - | n/a |
| exon | exon:Solyc01g068280.2.1.14 | SL2.50ch01:77423334..77423389 | 56 | - | 1 |
| exon | exon:Solyc01g068280.2.1.15 | SL2.50ch01:77423165..77423255 | 91 | - | n/a |
| exon | exon:Solyc01g068280.2.1.16 | SL2.50ch01:77421139..77421273 | 135 | - | n/a |
| exon | exon:Solyc01g068280.2.1.17 | SL2.50ch01:77420928..77421005 | 78 | - | n/a |
| exon | exon:Solyc01g068280.2.1.18 | SL2.50ch01:77419215..77419424 | 210 | - | n/a |
| exon | exon:Solyc01g068280.2.1.19 | SL2.50ch01:77418980..77419132 | 153 | - | n/a |
| exon | exon:Solyc01g068280.2.1.2 | SL2.50ch01:77427392..77427490 | 99 | - | 2 |
| exon | exon:Solyc01g068280.2.1.20 | SL2.50ch01:77418787..77418905 | 119 | - | 1 |
| exon | exon:Solyc01g068280.2.1.21 | SL2.50ch01:77417200..77417311 | 112 | - | n/a |
| exon | exon:Solyc01g068280.2.1.22 | SL2.50ch01:77416401..77416469 | 69 | - | n/a |
| exon | exon:Solyc01g068280.2.1.23 | SL2.50ch01:77416149..77416246 | 98 | - | 1 |
| exon | exon:Solyc01g068280.2.1.24 | SL2.50ch01:77415838..77415966 | 129 | - | 1 |
| exon | exon:Solyc01g068280.2.1.25 | SL2.50ch01:77414328..77414396 | 69 | - | 1 |
| exon | exon:Solyc01g068280.2.1.26 | SL2.50ch01:77414117..77414246 | 130 | - | n/a |
| exon | exon:Solyc01g068280.2.1.27 | SL2.50ch01:77413747..77414050 | 304 | - | n/a |
| exon | exon:Solyc01g068280.2.1.3 | SL2.50ch01:77427209..77427295 | 87 | - | 2 |
| exon | exon:Solyc01g068280.2.1.4 | SL2.50ch01:77427045..77427131 | 87 | - | 2 |
| exon | exon:Solyc01g068280.2.1.5 | SL2.50ch01:77426819..77426911 | 93 | - | 2 |
| exon | exon:Solyc01g068280.2.1.6 | SL2.50ch01:77426488..77426586 | 99 | - | 2 |
| exon | exon:Solyc01g068280.2.1.7 | SL2.50ch01:77426250..77426336 | 87 | - | 2 |
| exon | exon:Solyc01g068280.2.1.8 | SL2.50ch01:77426074..77426160 | 87 | - | 2 |
| exon | exon:Solyc01g068280.2.1.9 | SL2.50ch01:77425073..77425956 | 884 | - | n/a |
| intron | intron:Solyc01g068280.2.1.10 | SL2.50ch01:77424993..77425072 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.11 | SL2.50ch01:77424764..77424861 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.12 | SL2.50ch01:77424148..77424708 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.13 | SL2.50ch01:77423601..77424024 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.14 | SL2.50ch01:77423390..77423492 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.15 | SL2.50ch01:77423256..77423333 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.16 | SL2.50ch01:77421274..77423164 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.17 | SL2.50ch01:77421006..77421138 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.18 | SL2.50ch01:77419425..77420927 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.19 | SL2.50ch01:77419133..77419214 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.2 | SL2.50ch01:77427491..77427577 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.20 | SL2.50ch01:77418906..77418979 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.21 | SL2.50ch01:77417312..77418786 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.22 | SL2.50ch01:77416470..77417199 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.23 | SL2.50ch01:77416247..77416400 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.24 | SL2.50ch01:77415967..77416148 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.25 | SL2.50ch01:77414397..77415837 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.26 | SL2.50ch01:77414247..77414327 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.27 | SL2.50ch01:77414051..77414116 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.3 | SL2.50ch01:77427296..77427391 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.4 | SL2.50ch01:77427132..77427208 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.5 | SL2.50ch01:77426912..77427044 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.6 | SL2.50ch01:77426587..77426818 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.7 | SL2.50ch01:77426337..77426487 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.8 | SL2.50ch01:77426161..77426249 | n/a | - | n/a |
| intron | intron:Solyc01g068280.2.1.9 | SL2.50ch01:77425957..77426073 | n/a | - | n/a |
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