Solanum lycopersicum mRNA Solyc01g079250.2.1

mRNA details  
Name
Solyc01g079250.2.1
Type
mRNA
Length
2,612
Organism
Solanum lycopersicum
Description
mRNA splicing factor ATP-dependent RNA helicase (AHRD V1 **** Q2UED4_ASPOR); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal
Location(s)
SL2.50ch01:78340114..78345947
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0004386
  • GO:0005524
Length
5834
Nb exon
7
Sifter term
GO:0004004
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g079250.2.1 mRNA splicing factor ATP-dependent RNA helicase (AHRD V1 **** Q2UED4_ASPOR); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal

CGTCCTATATATGCAATCCACAAACTCAAACCCTAATTTTCTCTTTTCATTGTCTCCCTAGGTTTAGGCTTTCCCCCGGAAACCTACTCGCCTGTTCTCCGATTATACTCGATGGGAACCGAGCGGAAGAGGAAGGTGAGCTTGTTCGATGTGGTGGATGACTCGGCAGCGAAGAAACTCAATGGAGGCTTAAATGGTGGAAACAGCATGACGGCTTCGATCAACAAGTGGAATGCAAAGCCTTACTCACAGAGATTTTATGACATTTTGGAGAAGAGGAAGACTCTTCCGGTTTGGCATCAAAAGGAGGAGTTCTTACAGGCATTAAAATCCAATCAAACTCTTATCTTGGTCGGTGAAACCGGTAGTGGTAAAACAACTCAGATTCCACAGTTTGTTTTGGATGCTGTTGAAGTAGAGACAGCTGATAAGCGCAGGAAATATATGATTGGTTGCACTCAACCTCGGAGGGTGGCTGCAATGTCTGTCTCTCGTCGTGTTGCTGAAGAGATGGATGTTGTAATTGGGGAAGAAGTTGGATATAGCATTCGTTTTGAGGACTGCACTAGTGCTAGAACTGTTTTAAAATACTTAACAGATGGTATGCTTTTAAGAGAAGCAATGGCGGATCCTCTATTGGAACGCTACAAAGTAATTATTCTTGATGAAGCTCATGAAAGAACTTTGGCAACAGATGTCCTGTTTGGGCTTTTGAAAGAGGTGTTGAAAAATAGACCAGACCTAAAGCTAGTTGTTATGAGTGCCACACTTGAAGCAGAGAAGTTTCAGGGTTACTTCTTTGGTGCACCTCTCATGAAAGTTCCTGGAAGGCTCCATCCAGTGGAAATTTTCTACACGCAGGATCCTGAGAGAGACTATCTTGAGGCTGCCATTCGGACTGTGGTGCAGATTCACACATGTGAACCTCCTGGTGACATCCTTGTTTTCCTCACCGGAGAAGAGGAGATTGAAGATGCATGTCGCAAAATCACAAAGGAAATTGGTAATATGGGTGATCAAGTAGGCCCTGTTAAAGCGGTGCCTCTTTATTCTACACTTCCCCCCGCTATGCAGCAAAAGATTTTTGAACCGGCCCCACCACCAGTTGTGGAGGGTGGTCCTCCTGGCAGGAAGATTGTTGTGTCAACCAACATTGCAGAAACATCTTTGACAATAGATGGCATTGTTTATGTCATAGATCCAGGATTTGCTAAGCAAAAGGTTTATAATCCAAGGGTGCGTGTGGAATCTTTGTTGGTGTCTCCTATTTCAAAGGCCAGTGCACACCAGAGATCAGGACGTGCTGGAAGAACTCAGCCAGGAAAATGCTTTAGACTTTACACGGAGAAAAGTTTCCATAATGACCTTCAACCTCAGACGTATCCAGAAATACTTCGGTCAAATTTGGCTAATACAGTTCTAACTTTGAAGAAGCTAGGTATTGATGACCTAGTTCATTTTGATTTTATGGATCCTCCTGCCCCCGAGACGTTGATGAGAGCACTAGAGGTTTTAAATTACTTGGGAGCATTGGATGATGATGGAAACATGACCCGGCTGGGTGAGATAATGAGTGAATTTCCTCTCGACCCTCAGATGGGGAAAATGCTTGTTGTCAGCCCCGAATTCAACTGCTCCAACGAAATCCTCTCAATATCTGCCATGTTATCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCTCAAAAAGCTGCGGATGAAGCAAAGAATCGGTTCGGTCACATAGATGGGGATCATTTGACGTTGCTGAATGTGTATCATGCCTACAAGCAAAACCAGGAGGATCCTCAATGGTGTTATGAGAATTTCATCAATCAGAGGGCTCTCAAATCAGCTGACAATGTGAGGCAACAGCTTTCTCGCATAATGGCCAGGTTCAACCTCAAGTTATGCAGCACAGACTTCAACAGTCGCGAGTACTATGTGAACATAAGGAAGGCTATGTTAGCCGGATATTTCATGCAGGTTGCACACCTAGAGCGTACTGGGCATTATCTAACCGTTAAAGACAATCAAGTGGTACACTTGCATCCTTCAAATTGCCTGGATCACAAGCCAGAATGGGTTATATATAATGAATATGTCTTAACAAGCAGGAATTTCATCCGCACTGTGACTGATATCCGTGGTGAATGGTTGGTTGATATTGCACCACACTACTATGACCTTGCAAACTTTCCACAATGCGAGGCGAAACGAGTGCTTGAGCGGTTATACAAGAAGCGGGAGCGAGAAAAAGATGAAAGCAAGAGCAAAAAATGAATCCATTCGTCATACTTTTAGTTCCTCCAAGCACGAACACTCCATGGGAACTCTGGGGTCAGAATTTGGCCGATAGGTTAAAGATTGATGTACCATCTATTATGTACTGTAATAGTTTCTATGAATCCCATCTGAACTATTTAATACCCTGTTTCTTGTTGCTGGAGTGATCTATTTTTTATCTGTTCCTCGCGTTCAATGTTGTGAATTATCGAACCATCATTGTAAGTTTTTTCATGTGCTGAAGAAAATATATGCAGCCTTTCTGCTATATAGAAACTTGATTTAGATTAATGAGCAATATGGGATGCAGCTGCACAACATCTTCT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g079250.2.1SL2.50ch01:78340442..78345836724-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g079250.2SL2.50ch01:78340114..783459475,834-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g079250.2.1.1SL2.50ch01:78345564..78345947384-n/a
exonexon:Solyc01g079250.2.1.2SL2.50ch01:78343832..78344034203-1
exonexon:Solyc01g079250.2.1.3SL2.50ch01:78342105..783431891,085-2
exonexon:Solyc01g079250.2.1.4SL2.50ch01:78341572..78341697126-2
exonexon:Solyc01g079250.2.1.5SL2.50ch01:78341236..78341474239-n/a
exonexon:Solyc01g079250.2.1.6SL2.50ch01:78341005..78341123119-1
exonexon:Solyc01g079250.2.1.7SL2.50ch01:78340114..78340569456-n/a
intronintron:Solyc01g079250.2.1.2SL2.50ch01:78344035..78345563n/a-n/a
intronintron:Solyc01g079250.2.1.3SL2.50ch01:78343190..78343831n/a-n/a
intronintron:Solyc01g079250.2.1.4SL2.50ch01:78341698..78342104n/a-n/a
intronintron:Solyc01g079250.2.1.5SL2.50ch01:78341475..78341571n/a-n/a
intronintron:Solyc01g079250.2.1.6SL2.50ch01:78341124..78341235n/a-n/a
intronintron:Solyc01g079250.2.1.7SL2.50ch01:78340570..78341004n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17682954%2Fdetails feature 17682954
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)