Solanum lycopersicum mRNA Solyc01g079800.2.1
 mRNA details
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| Name | Type |
Length
1,465
|
Organism |
|
Description
ATP-dependent RNA helicase (AHRD V1 ***- A0YWB9_LYNSP); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
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Location(s)
SL2.50ch01:78927574..78933353
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0008026
- GO:0005524
- Length
- 5780
- Nb exon
- 10
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc01g079800.2.1 ATP-dependent RNA helicase (AHRD V1 ***- A0YWB9_LYNSP); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
TGACGTCCTCTTTTGTTTCATCTTCTCCACTCCAATTCCTTCTTCCCGAATGGCGCATTTCTCTGCAACTCAACTGCATACTCTTTCATGGACTTCATCGATTAACCCTAACGTTGCCTATCGAACTCCGAAACTTTTGTTATATCCAAAGCCTTCGAGAGCTTCCTTCAGCTCATCCAATGTTGAAACTACAACTCTAACGAAGGATTCATCAACGACAACGCTCCGGGAACTCTGTTATGGTCACGTGCAAGAGCACGTGATTCTCCGGGCAGAAGAGATTGGATATGTGATGCCTACAAAAGTGCAGCTACAGGCATTGCCTTTCCTCTTTTCTGGACGTGATTGTGTGCTTCATGCTCAGACAGGTTCTGGGAAAACCTTAGCGTACCTGCTCCAAGTATTGTCAGTCGTTGACAGTCAAAGGTCAGCAGTACAGGCATTGATCGTGGTACCTACTAGGGAGCTTGGCATGCAAGTTACAAAAGTTGCTCGGATGCTTGCTGCAAATCCTTCAGAACATGAATCAGGACTGAAATCATGCACTGTTATGGCTCTTCTAGATGGGGGGATGTTGAAACGACACAAGAGTTGGCTAAAGGCTGAGCCACCCACCATTGTTGTTGCAACTATAGGAAGTTTGTGTCAAATGCTTGAGAAACATATTTTGAAGCTAGATACCTGCCAAGTACTTGTTGTTGATGAGGTTGATTTCATGTTCAATTCTTCAAAAGAAGTCAGCTCTCTTAAAAGGCTGTTGACATCCTACTCATCCAGCAAGAACCGTCAAACTATCTTTGCTAGTGCTTCAATTCCACAGCACAGAAGATTTTTGTACGACTGTATGCAGCAAAAATGGACCAGGGCTGATGTAGTTCACGTCCATGTGAATTCAGTAGAGCCGATGCCTTCATGCCTCCATCATCGATTTGTGGTATGCAACAGAATGGAAAAAAATCCAATGTTACTCTCTTTACTGCAGACGGATTCACCTGAATCTGCCATAATATTTGTCAGTGAGCAATCTGAGAAGTCAAAAAAGGCAGGAAGTGCACCTCCAACTACTCTTTTGGTAGATTTTCTAAAGTCCTCTTGTGGGAGATTTTCCGACATCTCTCTTCTAGAGGAAGATATGAATTTCAATCAACGAGCTGCATCCTTATCTGAGCTTCGAGGAGGAGGAGGTTATTTATTGGTGGCAACAGATATAGCAGCTAGAGGTGTTGATCTACCAGAGACAACACATATATACAATTTTGATATCCCAAAAGATGCAGTAAATTATCTTCATCGAGCTGGAAGAACTGGAAGAAAACCATTTTCAGATAAAAAATGTTTTGTTACCAGCATTATAACAGTGGAAGAGCGGTTTGTGTTAAAGAGATTCGAAAATGAACTAATGTTCTGTTGCGAACAATTATTCTTTTAACTGTGCATTGAGTTCTTCTCCATAATTGTTGGCCTC
TGACGTCCTCTTTTGTTTCATCTTCTCCACTCCAATTCCTTCTTCCCGAATGGCGCATTTCTCTGCAACTCAACTGCATACTCTTTCATGGACTTCATCGATTAACCCTAACGTTGCCTATCGAACTCCGAAACTTTTGTTATATCCAAAGCCTTCGAGAGCTTCCTTCAGCTCATCCAATGTTGAAACTACAACTCTAACGAAGGATTCATCAACGACAACGCTCCGGGAACTCTGTTATGGTCACGTGCAAGAGCACGTGATTCTCCGGGCAGAAGAGATTGGATATGTGATGCCTACAAAAGTGCAGCTACAGGCATTGCCTTTCCTCTTTTCTGGACGTGATTGTGTGCTTCATGCTCAGACAGGTTCTGGGAAAACCTTAGCGTACCTGCTCCAAGTATTGTCAGTCGTTGACAGTCAAAGGTCAGCAGTACAGGCATTGATCGTGGTACCTACTAGGGAGCTTGGCATGCAAGTTACAAAAGTTGCTCGGATGCTTGCTGCAAATCCTTCAGAACATGAATCAGGACTGAAATCATGCACTGTTATGGCTCTTCTAGATGGGGGGATGTTGAAACGACACAAGAGTTGGCTAAAGGCTGAGCCACCCACCATTGTTGTTGCAACTATAGGAAGTTTGTGTCAAATGCTTGAGAAACATATTTTGAAGCTAGATACCTGCCAAGTACTTGTTGTTGATGAGGTTGATTTCATGTTCAATTCTTCAAAAGAAGTCAGCTCTCTTAAAAGGCTGTTGACATCCTACTCATCCAGCAAGAACCGTCAAACTATCTTTGCTAGTGCTTCAATTCCACAGCACAGAAGATTTTTGTACGACTGTATGCAGCAAAAATGGACCAGGGCTGATGTAGTTCACGTCCATGTGAATTCAGTAGAGCCGATGCCTTCATGCCTCCATCATCGATTTGTGGTATGCAACAGAATGGAAAAAAATCCAATGTTACTCTCTTTACTGCAGACGGATTCACCTGAATCTGCCATAATATTTGTCAGTGAGCAATCTGAGAAGTCAAAAAAGGCAGGAAGTGCACCTCCAACTACTCTTTTGGTAGATTTTCTAAAGTCCTCTTGTGGGAGATTTTCCGACATCTCTCTTCTAGAGGAAGATATGAATTTCAATCAACGAGCTGCATCCTTATCTGAGCTTCGAGGAGGAGGAGGTTATTTATTGGTGGCAACAGATATAGCAGCTAGAGGTGTTGATCTACCAGAGACAACACATATATACAATTTTGATATCCCAAAAGATGCAGTAAATTATCTTCATCGAGCTGGAAGAACTGGAAGAAAACCATTTTCAGATAAAAAATGTTTTGTTACCAGCATTATAACAGTGGAAGAGCGGTTTGTGTTAAAGAGATTCGAAAATGAACTAATGTTCTGTTGCGAACAATTATTCTTTTAACTGTGCATTGAGTTCTTCTCCATAATTGTTGGCCTC
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc01g079800.2.1 | SL2.50ch01:78927609..78933304 | 460 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc01g079800.2 | SL2.50ch01:78927574..78933353 | 5,780 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc01g079800.2.1.1 | SL2.50ch01:78933084..78933353 | 270 | - | 1 |
| exon | exon:Solyc01g079800.2.1.10 | SL2.50ch01:78927574..78927873 | 300 | - | n/a |
| exon | exon:Solyc01g079800.2.1.2 | SL2.50ch01:78932516..78932609 | 94 | - | n/a |
| exon | exon:Solyc01g079800.2.1.3 | SL2.50ch01:78931644..78931757 | 114 | - | n/a |
| exon | exon:Solyc01g079800.2.1.4 | SL2.50ch01:78931416..78931538 | 123 | - | n/a |
| exon | exon:Solyc01g079800.2.1.5 | SL2.50ch01:78930566..78930670 | 105 | - | n/a |
| exon | exon:Solyc01g079800.2.1.6 | SL2.50ch01:78929431..78929589 | 159 | - | n/a |
| exon | exon:Solyc01g079800.2.1.7 | SL2.50ch01:78929258..78929326 | 69 | - | n/a |
| exon | exon:Solyc01g079800.2.1.8 | SL2.50ch01:78928802..78928891 | 90 | - | n/a |
| exon | exon:Solyc01g079800.2.1.9 | SL2.50ch01:78928017..78928157 | 141 | - | n/a |
| intron | intron:Solyc01g079800.2.1.10 | SL2.50ch01:78927874..78928016 | n/a | - | n/a |
| intron | intron:Solyc01g079800.2.1.2 | SL2.50ch01:78932610..78933083 | n/a | - | n/a |
| intron | intron:Solyc01g079800.2.1.3 | SL2.50ch01:78931758..78932515 | n/a | - | n/a |
| intron | intron:Solyc01g079800.2.1.4 | SL2.50ch01:78931539..78931643 | n/a | - | n/a |
| intron | intron:Solyc01g079800.2.1.5 | SL2.50ch01:78930671..78931415 | n/a | - | n/a |
| intron | intron:Solyc01g079800.2.1.6 | SL2.50ch01:78929590..78930565 | n/a | - | n/a |
| intron | intron:Solyc01g079800.2.1.7 | SL2.50ch01:78929327..78929430 | n/a | - | n/a |
| intron | intron:Solyc01g079800.2.1.8 | SL2.50ch01:78928892..78929257 | n/a | - | n/a |
| intron | intron:Solyc01g079800.2.1.9 | SL2.50ch01:78928158..78928801 | n/a | - | n/a |
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