Sol Genomics Network

Solanum lycopersicum gene Solyc01g100380.2

Name Solyc01g100380.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g100380	Length 3,608

Description

Calreticulin 2 calcium-binding protein (AHRD V1 **** A8HMC0_CHLRE); contains Interpro domain(s) IPR009169 Calreticulin

Location(s)

SL2.50ch01:90427773..90431380

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3608

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g100380.2.1	SL2.50ch01:90427773..90431380	1,621	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g100380.2 SL2.50ch01:90431380..90427773 (sequence from reverse strand)
TATAAAAGAGCGTTCGTCAGAGATCTCACAGTCAGTATTTTCCATCTCACACAATAGTGGCCATGGCTACTCGACGAATGAAAAGCCCTAGCTCTCTCCATCTCGTTGCTGTGTTCTCTCTACTAGTAGTCGCCGCCGCCGCCGAAGTTTTCTTCCAGGAAAGCTTCAATGGTAAAAAAATTTATCCATTTTTTAATTAATTTAGTCAATTGATTGGATCAACTTCTGTGATCCATTTGATTTTGGAGTGAATTTGTGGAAACGATGAGGAGTGTGAAAGATCCGAGCTTAATTTTTTGTTTTTAGTTTGATCTGGGTGAAGCTTGAAGTTTCGGAGTAGATCTGTTAATTTTAAGATGATATATGTAGATCGGAATGTTGTTGTAGCATTTTAGGTTTTTGAATTCTATGTCTGTGACTCTGATTTATAATTTTTTGAATGTTTATATGAGTCTGAGTGCCATCGACTATATCGACATTGTCTCTGTGAAAGAGCATACTCCATTTGCGTTTATTTTCTTGCGATGGAACTGGACTGATTGGTAATTGGTAGAACTCTTAGATCTTATCCGGTTTGCTATATGATTTAAACAATCATGTCTTAACACTCTGACTAGCTAATATTCTATCTATATATTATACAGAATAAAATTTTGAAGGATCACGATTATTACAATTACATGGATAAAGTTGATTTTTGACATTTTCTAGTATAACTAGAGGATGCACTCTTTTATTGTTTTCATATACAATGTTTGTTGGCAGTTTGTTTATTTGTTGACTGGAAATCAAAATAGTTAGCATTTATTAATTATATGTTTGACTGAATTAGCAATTAATGTTAGTGTTAGACACTGAAGTACATTAATGTTTCCTAGTTACTGAATTACTGTGAAATCTATGCTTATTAGCTGCTGATATTCTGTGGTCTATTCTTCTGCATTAGAATTATCAAGTTTAAATGTGTCAAATTATTCTCTTATGTTGGGCACTGTGAGGCTGATAAGTTTTGCTTCTTGAACTTTTAGATGGTTGGGAAAGCAGGTGGGTAAAATCTGAATGGAAGAAAGATGAAAACATGGCTGGAGAGTGGAATCACACCTCTGGGAAGTGGAATGGTGACGCCAATGACAAAGGTCTGCAATCTCCCCCTAATTAGAGCCTAGTTTCTTCAAGCTATAAGCCTTTTCATATCTGACTCTTTCATCTGGAGATGAATCTTAAAAATAATAACATCTATTTACTTATTCTATATTTCAGGTATTCAGACCAGTGAAGACTACAGGTTCTACGCCATTTCGGCTGAGTTCCCTGAATTTAGTAACAAGGGAAAGAACTTAGTGTTCCAGTTCTCTGTTAAGCATGAGCAGAAGCTTGACTGTGGTGGTGGGTACATGAAGTTGCTTAGTGGAGACGTTGACCAAAAGAAATTCGGTGGTGACACTCCCTACAGGTTGCACATAATATTTTCTTGTTACTTTTTTTTAGCATAGAAGTATTTATATGTTTTGAAGCATGTTTTTACTTTTAAAAATGTTCCGGAACTCGTGAATTGAGTTTTTGATAAATGTTTCCATGCAGTATCATGTTTGGACCAGACATCTGTGGCTACAGTACCAAGAAAGTCCATGCTATTCTCACTTATAACGAGACAAACCATTTGATCAAGAAGGAAGTCCCATGTGAGACTGATCAGCTGACCCATGTCTACACTTTCATCCTCCGTCCTGATGCCACATACAGTATTCTCATTGACAATGTGGAGAAACAGTCTGGTAGCTTGTACTCTGATTGGGACATTCTCCCACCAAAGAAGATCAAGGATCCAAGTGCCAAGAAAGTAATTCCCAGTGCAACACATTTTCAGAGTCGATTGATATTTATCTTTTTGATAGTATTATTGATCAAGTTACATGTTTATTGCAGCCTGAAGATTGGGATGACAAGGAATTCATTGATGATCCCGAGGATAAGAAGCCAGAGGTATCCTTTGTATATTTTGAGTGGTTTGTCTGTGCCATAAAAAGAAAATGGAGGAAGATGATGATCAACTAATTCGATCTGTAATAACTGCAGGGCTATGATGACATTCCAGAGGAGATAACTGATCCTGAAGCCAAGAAGGTAACCAGTTGAGCTTTCCTTATATAAGTCTTATATTAATACCTGGAATATAGAGTAAATTTTGTAATTACTGGGCCTTTTTTAATTTGCAGCCAGAGGACTGGGATGATGAAGAAGATGGTGAATGGACAGCCCCAACCATCCCCAATCCAGAGTACAAGGGCCCATGGAAGGCAAAGGTTTGTGGAGTCTGAACATTATACTTGAATGACTTGTCCCTGAGAATGGTGCCTAATGCTTAGTCTTGTCTTTTCAGAAAATCAAGAACCCCAACTACAAGGGAAAGTGGAAGGCTCCTATGATTGACAACCCAGGTCCTTTTAGTTGTCAATACTCCATCTATATATTTTTTTAGCTGACTTTTAGTATCACAATTATTGATATCTATGCTGTTTTTTTCTCTAGACTTCAAGGATGACCCAGATCTATATGTTTTCCCAAAATTGAAGTATGTTGGAGTGGAGCTGTGGCAAGTAAGGAATTTTCCTTTTCTTGTGTGATCTGCTGTTAAATTACAGCATTAACAATTTTTATTTACTGCATTTGCACTTAATTGACGTAAGCATAATGTATTTTGCAGGTGAAATCTGGAACTTTGTTTGACAATGTTGTGATATGCGATGATCCAGAGTTTGCCAAGTCAATTGCAGAGGAAACATGGGGAAAGCAGAAAGATGTATGTGGTTCCTTCCTTATTCTCTTAGGGTAGTCATAATAGAATTATTGAGTCTTAATGAAAACACGTAAGGGCAAAGCCTGATCATGGTGATTATTTGGTCAGGATATAAGTGAATATTATCTTTAATTATGCAGGCTGAAAAGGCTGCTTTTGAGGAAGCAGAAAAGAAGAGAGAGGAGGAGGAATCAAAGAATGCTCCAGCTGAATCTGATGTAAGCCTCTAAATTTTCTTTGGAAAACCCTTCCTTACTCTATCAGTAAGCTGTGTTGTACCTCCTTGTCTTGCTCTTATGATGTTAACGTTTTCTCAGGCCGATGAAGATGACGAGGCTGATGAGGCTGATTCAGATGATGCTGATGACAAGTCTGACTCCAAGGATGAGGACACACATGTAAGAATTGACAAGTTGTTATAACTTTCAAAACAATGGTGGCAGCAATCTTTCTTCTGGTTCTCAATCTGACAGTGTGTACCCTTTTTTTTGCAGGATGAACTGTAAGAGCCAAGCATTTTGATTCAACTGACAAAGAAGCTTACTTGGCAGTTCCCGGAAGATTTCGTCCTCCCTCCCCCCCTTTTTTTTCCTTATTAGTGAATTAGTAGCCCCTTCCCAATTTTAGTGAAAAGACAGAGATTGAGGGTGCATGAGGTCTTATATGGCTGATTGCTTTGATGTCATTGGGACTCGGCCGTTAGAAATACATGTTTGGTTTTGAGTAGAATTTTAAACTAAATGGTGTTGAAATTACACTAGTTAATTTCTACCTAATTTTCTATTTAAATTGCTCCTTGTCTTCGATTATT

Download sequence region

Download sequence (3.6Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g100380.2.1

Ontology terms

terms associated with this mRNA

GO:0005509 – calcium ion binding

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g100380.2.1	SL2.50ch01:90428077..90431318	418	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g100380.2	SL2.50ch01:90427773..90431380	3,608	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g100380.2.1.1	SL2.50ch01:90431210..90431380	171	-	2
exon	exon:Solyc01g100380.2.1.10	SL2.50ch01:90428581..90428676	96	-	n/a
exon	exon:Solyc01g100380.2.1.11	SL2.50ch01:90428366..90428443	78	-	n/a
exon	exon:Solyc01g100380.2.1.12	SL2.50ch01:90428186..90428266	81	-	n/a
exon	exon:Solyc01g100380.2.1.13	SL2.50ch01:90427773..90428089	317	-	n/a
exon	exon:Solyc01g100380.2.1.2	SL2.50ch01:90430245..90430352	108	-	2
exon	exon:Solyc01g100380.2.1.3	SL2.50ch01:90429928..90430120	193	-	1
exon	exon:Solyc01g100380.2.1.4	SL2.50ch01:90429541..90429799	259	-	n/a
exon	exon:Solyc01g100380.2.1.5	SL2.50ch01:90429398..90429454	57	-	n/a
exon	exon:Solyc01g100380.2.1.6	SL2.50ch01:90429257..90429304	48	-	n/a
exon	exon:Solyc01g100380.2.1.7	SL2.50ch01:90429078..90429164	87	-	n/a
exon	exon:Solyc01g100380.2.1.8	SL2.50ch01:90428943..90429000	58	-	2
exon	exon:Solyc01g100380.2.1.9	SL2.50ch01:90428784..90428851	68	-	n/a
intron	intron:Solyc01g100380.2.1.10	SL2.50ch01:90428677..90428783	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.11	SL2.50ch01:90428444..90428580	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.12	SL2.50ch01:90428267..90428365	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.13	SL2.50ch01:90428090..90428185	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.2	SL2.50ch01:90430353..90431209	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.3	SL2.50ch01:90430121..90430244	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.4	SL2.50ch01:90429800..90429927	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.5	SL2.50ch01:90429455..90429540	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.6	SL2.50ch01:90429305..90429397	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.7	SL2.50ch01:90429165..90429256	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.8	SL2.50ch01:90429001..90429077	n/a	-	n/a
intron	intron:Solyc01g100380.2.1.9	SL2.50ch01:90428852..90428942	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc01g100380

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17699276%2Fdetails feature 17699276

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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