Sol Genomics Network

Solanum lycopersicum gene Solyc01g102580.2

Name Solyc01g102580.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g102580	Length 3,951

Description

Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9

Location(s)

SL2.50ch01:91357022..91360972

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3951

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g102580.2.1	SL2.50ch01:91357022..91360972	2,515	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g102580.2 SL2.50ch01:91360972..91357022 (sequence from reverse strand)
CAAGTTTGGTAATATTACTAGTATTAAATATATTGTGTTATAATCAAAAAAGCCAAAAAAACAGCACCATCACAGCTTTCATATATCCATTATTTTCCACTAGATTTTCTAGTCCCATTTTCCTCCTTCCTCCATAATACCCCATCCTTTCTGCCATCTCCTTTCATTCCACAACTTTCTTGAAAAAAGGAAAAAAAAAAACAGTAGATCAAGACTTACCCAGTTCAGCATTTCTTGAATCTTGGAAAAAAGATTCAACCTTTGCATGTTTTGAGCTTGTGGGGGTGTTTTTTCAGCTCTAATTTGAGTACCCAGAATCAATATGTACGGTAGGGATCCATGGGGTGGACCTTTAGAGATCCACACAGCTGATTCAGCTACAGACGATGACAGGAGCAGGAACTTGCAGGATTTTGATAGGGCAGCGATGTCTAGGTCACTGGATGAGACTCAACAGAGCTGGCTGTTGGGTCCGACTGAGCAGAAGAAGAAGAAGTATGTGGATCTTGGTTGTATTATTGTGAGTAGGAAGATTTTTAAGTGGACTGTGGGGTGTATTATTGCGGCTGCGCTTCTAGCTGGATTCATTACTATGATTGTTAAGCTTGTACCTAGACACAAACATCACAATCCTCCACCGGATAATTATACTCTGGCTCTCCGTAAAGCTCTTATGTTCTTCAATGCCCAGAAATGTAAGTTATCTGTTTATTATTTGCTTGAATTCTTCAGTCTGTGGGCTTAAAAATCTGATTTTTACTATCTCATTGCACATTAGATCTGTTATTGATTATGTTTTTTGTCTGGATTTTAGTTTGTGATAGATTGATAGTTGGAAACTGTATGATCTTGGTGAAGCATGATTCAGTCCTCTGTATTGATCTTCTTGTTTTGTTTGCTTTGATTTGGAAATATTTATTATTTTCCCCAAATTTTTGGTTAGTTTGGTTGATTAAGGTAATGAACAACAACATGCCCACCGTAATCCTAAGAGTATAAGTGGGGTTCGAGGAGGGTAGAGTGTCGCAGCCTTACCCCCTTATCTTATGTGAAGTTAGTATTTAAGTTGATCAAGGTCACTTGATATAGAATATGATATTTTTTTCATTTATCTTTATATATGATATGTGGAATGGCTCTACGTGCCTTTGACTTGAGATTGGAAGATTACTGCATCAGCAGCTACATGATTTGAGCTGCAAAAATATTATTTTTTAAATTTAGTGCTTGAATGTGATGTTTTGGTCTTCTTTGGTTATAGCTTAGTTTTTTGCTAATTCTCTATTGGAATTTACAGCTGGAAAATTGCCCAAGCATAATAACGTGTCATGGAGGGGGAATTCATGTTTGCAAGATGGCAAGTCAGATGATTCAACTATGTTCAAAAATTTGGTTGGGGGTTATTATGATGCAGGAGATGCAATCAAGTTTAATTTCCCTCAGTCATTTGCTCTCACCATGTTGAGTTGGAGTGTGATCGAGTACAGTGCTAAATATGAAGCTGCTGGGGAGCTCGCTCATGTTAAAGATACTATTAAGTGGGGTACTGATTATCTCCTGAAGACTTTCAATTCCTCTGCTGATACCATAGACCGGATTGCTGCACAGGTAATTATCATTTAAATTTTCCTTATAAATGTGTAGATCACAAATTTTCTCAACTAGAATGTCATAGTTTGTTCTATCGTCAGTAATTAGTATTCAGCTCTAACCAGTTATCATCGCCTTACCCGTCTGAGTCATGAAATCATGATTCCCATTATACTTCTTAAACATTTAAAATAACTATAATCTCTTGGCTGGCTTTTTGACTTTCACTAAGATAAGTCTCCTTGTTAATCAGATCAGCATCAATGACTGCATGAAATTGTATTTTGACAGTGTTTGAGTCAAAATTGAACTTATTCTGAATTAATTAATCTCATCGGACAAATTATGTTTTGTGTAGGTTGGAAAAGGGGATACTACCGGAGGGGCTACTGACCCCAATGATCACTATTGCTGGGTGCGTCCTGAAGACATTGATTACGCTCGGCCTGTGACTGAATGTCACGGCTGCTCGGACCTTGCTGCAGAGATGGCTGCTGCGCTGGCTTCTGCCTCCATTGTTTTTAAGGACAACAAAGCTTACTCGCAAAAGCTTGTACATGGTGCTAGAACTCTCTTCAAATTTTCTAGAGACCAGCGTGGAAGATACAGCGTCGGCAATGAAGCTGAAACTTTCTATAATTCCACCGGTTATTGGGATGAGTTTATATGGGGTGCGGCTTGGCTGTATTATGCTACTGGAAATTCTTCATATCTTCAGCTTGCTACAACACCTGGTATTGCCAAACATGCTGGTGCTTTCTGGGGAGGTCCTGATTACGGTGTGCTCAGCTGGGATAACAAGCTCACTGGAGCTCAGGTCAGTCAATATCACCTCTTCTTTCCTTTTACCCTCCTCTAGTATTTCTGTGCAGCTTTTGTGCTTGAGACTTATAAGCTAGGATATCTCATTTCTTCGAGGGACTTATTTTTTGCTATAACACTGCTTTTTGTTATCTCTTCAGGTGCTACTGAGCCGTATGAGGCTGTTTCTGAGCCCTGGATATCCTTATGAAGAAATTTTAAGGACATTTCATAACCAGACTAGCATAATCATGTGCTCCTACCTGCCAATCTTCACTTCTTTTAATCGCACAAAAGGTAACCTTCATTACCCAATTCGCGTCAAAGTAATTTGAAATCTTTAGTTTGAAATCTAAACCAATTCTTTTTGACCTTTCCAGGAGGGCTAATCCAATTAAACCATGGAAGGCCTCAGCCTCTCCAGTATGTAGTCAATGCAGCCTTCCTGGCTACCTTGTTTAGTGACTATCTCGCAGCTGCCGACACTCCTGGATGGTACTGTGGACCAAATTTCTACTCTACTGATGTCCTGCGTAAATTTGCAGAAACCCAGGTAAATGAATCTCCCCTAGTAAGAGTCTCTTTTCTTATTCTTGGGTTCTATCTTGTCAATGGTTGTTGTTTATGCTATTCCACAACCAACTTCCCTTCTCCCTGCTTCATGTTTTGGGGACAATAGGGACAAATATGAATGATAATTTGCCGCTAGGGTGTGTAGAATATTAGAGATACGATATACACAAGTTTTCTTTTGCCTATTCTGTTGTAAGGTGAAAATCATTTCTTGGTTTTAACTTGGACGTTTCTTTGACCTTGTAGATTGACTACATCCTTGGGAAGAACCCCAGGAAAATGAGTTATGTTGTTGGCTTTGGCAATCACTATCCTAAGCATGTCCACCACAGAGGGGCATCAATTCCTAAAAACAAGGTCAAATATAACTGTAAAGGTGGATGGAAATATAGGGATTCATCTAAGGCTAATCCAAATACTATTGTTGGAGCCATGGTTGCTGGACCAGACAAGCATGATGGTTTCCGTGATGTCCGTTCTAATTACAATTATACGGAGCCTACTCTTGCTGGAAATGCTGGTTTAGTTGCAGCTCTCGTGGCTCTATCTGGAGATAGAGATGTCGGAATTGATAAGAACACTTTATTCTCTGCAGTACCACCGATGTTTCCCACTCCACCACCTCCGCCAGCTCCTTGGAAACCATGATCTTTAATACGTCGTTTGTGCCTCCCTCATCTGAGTGTAGGTTCTTTATTTTTGATATTAGATTCTGAGACAAAGAAGCTAGATGAAACTTGGATGTGCACACCCTTGAACATAGATAGTAGTTTGGGCATTATTAGGACACTAGCAAGTGAAATTCTTCAAGAAATGCCCAATGCATGTCTGTTTTACTTTGATGTATCATCTACACACACTATGAATGTAACGTAACCAATCATGTATTCTTTGAACAGTGTAATCTCAATTTCCTCGGAACAAGTTCTCACATAATGTTCGTGTTTTGTGTTGTCAAAAATTATTCAAGTCAGGATAGTGCTGGAC

Download sequence region

Download sequence (3.9Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g102580.2.1

Ontology terms

terms associated with this mRNA

GO:0008810 – cellulase activity

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc01g102580.2.1 Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9
CAAGTTTGGTAATATTACTAGTATTAAATATATTGTGTTATAATCAAAAAAGCCAAAAAAACAGCACCATCACAGCTTTCATATATCCATTATTTTCCACTAGATTTTCTAGTCCCATTTTCCTCCTTCCTCCATAATACCCCATCCTTTCTGCCATCTCCTTTCATTCCACAACTTTCTTGAAAAAAGGAAAAAAAAAAACAGTAGATCAAGACTTACCCAGTTCAGCATTTCTTGAATCTTGGAAAAAAGATTCAACCTTTGCATGTTTTGAGCTTGTGGGGGTGTTTTTTCAGCTCTAATTTGAGTACCCAGAATCAATATGTACGGTAGGGATCCATGGGGTGGACCTTTAGAGATCCACACAGCTGATTCAGCTACAGACGATGACAGGAGCAGGAACTTGCAGGATTTTGATAGGGCAGCGATGTCTAGGTCACTGGATGAGACTCAACAGAGCTGGCTGTTGGGTCCGACTGAGCAGAAGAAGAAGAAGTATGTGGATCTTGGTTGTATTATTGTGAGTAGGAAGATTTTTAAGTGGACTGTGGGGTGTATTATTGCGGCTGCGCTTCTAGCTGGATTCATTACTATGATTGTTAAGCTTGTACCTAGACACAAACATCACAATCCTCCACCGGATAATTATACTCTGGCTCTCCGTAAAGCTCTTATGTTCTTCAATGCCCAGAAATCTGGAAAATTGCCCAAGCATAATAACGTGTCATGGAGGGGGAATTCATGTTTGCAAGATGGCAAGTCAGATGATTCAACTATGTTCAAAAATTTGGTTGGGGGTTATTATGATGCAGGAGATGCAATCAAGTTTAATTTCCCTCAGTCATTTGCTCTCACCATGTTGAGTTGGAGTGTGATCGAGTACAGTGCTAAATATGAAGCTGCTGGGGAGCTCGCTCATGTTAAAGATACTATTAAGTGGGGTACTGATTATCTCCTGAAGACTTTCAATTCCTCTGCTGATACCATAGACCGGATTGCTGCACAGGTTGGAAAAGGGGATACTACCGGAGGGGCTACTGACCCCAATGATCACTATTGCTGGGTGCGTCCTGAAGACATTGATTACGCTCGGCCTGTGACTGAATGTCACGGCTGCTCGGACCTTGCTGCAGAGATGGCTGCTGCGCTGGCTTCTGCCTCCATTGTTTTTAAGGACAACAAAGCTTACTCGCAAAAGCTTGTACATGGTGCTAGAACTCTCTTCAAATTTTCTAGAGACCAGCGTGGAAGATACAGCGTCGGCAATGAAGCTGAAACTTTCTATAATTCCACCGGTTATTGGGATGAGTTTATATGGGGTGCGGCTTGGCTGTATTATGCTACTGGAAATTCTTCATATCTTCAGCTTGCTACAACACCTGGTATTGCCAAACATGCTGGTGCTTTCTGGGGAGGTCCTGATTACGGTGTGCTCAGCTGGGATAACAAGCTCACTGGAGCTCAGGTGCTACTGAGCCGTATGAGGCTGTTTCTGAGCCCTGGATATCCTTATGAAGAAATTTTAAGGACATTTCATAACCAGACTAGCATAATCATGTGCTCCTACCTGCCAATCTTCACTTCTTTTAATCGCACAAAAGGAGGGCTAATCCAATTAAACCATGGAAGGCCTCAGCCTCTCCAGTATGTAGTCAATGCAGCCTTCCTGGCTACCTTGTTTAGTGACTATCTCGCAGCTGCCGACACTCCTGGATGGTACTGTGGACCAAATTTCTACTCTACTGATGTCCTGCGTAAATTTGCAGAAACCCAGATTGACTACATCCTTGGGAAGAACCCCAGGAAAATGAGTTATGTTGTTGGCTTTGGCAATCACTATCCTAAGCATGTCCACCACAGAGGGGCATCAATTCCTAAAAACAAGGTCAAATATAACTGTAAAGGTGGATGGAAATATAGGGATTCATCTAAGGCTAATCCAAATACTATTGTTGGAGCCATGGTTGCTGGACCAGACAAGCATGATGGTTTCCGTGATGTCCGTTCTAATTACAATTATACGGAGCCTACTCTTGCTGGAAATGCTGGTTTAGTTGCAGCTCTCGTGGCTCTATCTGGAGATAGAGATGTCGGAATTGATAAGAACACTTTATTCTCTGCAGTACCACCGATGTTTCCCACTCCACCACCTCCGCCAGCTCCTTGGAAACCATGATCTTTAATACGTCGTTTGTGCCTCCCTCATCTGAGTGTAGGTTCTTTATTTTTGATATTAGATTCTGAGACAAAGAAGCTAGATGAAACTTGGATGTGCACACCCTTGAACATAGATAGTAGTTTGGGCATTATTAGGACACTAGCAAGTGAAATTCTTCAAGAAATGCCCAATGCATGTCTGTTTTACTTTGATGTATCATCTACACACACTATGAATGTAACGTAACCAATCATGTATTCTTTGAACAGTGTAATCTCAATTTCCTCGGAACAAGTTCTCACATAATGTTCGTGTTTTGTGTTGTCAAAAATTATTCAAGTCAGGATAGTGCTGGAC

Download sequence (2.5Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g102580.2.1	SL2.50ch01:91357360..91360650	618	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g102580.2	SL2.50ch01:91357022..91360972	3,951	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g102580.2.1.1	SL2.50ch01:91360278..91360972	695	-	2
exon	exon:Solyc01g102580.2.1.2	SL2.50ch01:91359365..91359675	311	-	n/a
exon	exon:Solyc01g102580.2.1.3	SL2.50ch01:91358566..91359024	459	-	n/a
exon	exon:Solyc01g102580.2.1.4	SL2.50ch01:91358285..91358420	136	-	2
exon	exon:Solyc01g102580.2.1.5	SL2.50ch01:91358029..91358201	173	-	n/a
exon	exon:Solyc01g102580.2.1.6	SL2.50ch01:91357022..91357762	741	-	n/a
intron	intron:Solyc01g102580.2.1.2	SL2.50ch01:91359676..91360277	n/a	-	n/a
intron	intron:Solyc01g102580.2.1.3	SL2.50ch01:91359025..91359364	n/a	-	n/a
intron	intron:Solyc01g102580.2.1.4	SL2.50ch01:91358421..91358565	n/a	-	n/a
intron	intron:Solyc01g102580.2.1.5	SL2.50ch01:91358202..91358284	n/a	-	n/a
intron	intron:Solyc01g102580.2.1.6	SL2.50ch01:91357763..91358028	n/a	-	n/a

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Related views

Genetic loci

Tomato locus cel3 (endo-1,4-beta-glucanase (Cel3))

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17700774%2Fdetails feature 17700774

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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