Sol Genomics Network

Solanum lycopersicum gene Solyc01g105540.2

Name Solyc01g105540.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc01g105540	Length 3,754

Description

2-oxoglutarate/malate translocator (AHRD V1 **-- Q9FMF7_ARATH); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter

Location(s)

SL2.50ch01:93680342..93684095

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3754

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc01g105540.2.1	SL2.50ch01:93680342..93684095	2,032	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc01g105540.2 SL2.50ch01:93684095..93680342 (sequence from reverse strand)
CCTCTCAAACGATCTATTATGTGGCCATTGTAGTTTCCGCCACCCCAAAGGTCCCTCCCTCACCCTTTTCACATTTCATCTCTTTTCTCTTTTCACTTCACTCTTTGCCGGAGAAAAAAAAATGGAGAGATTGGCACTTCACTCTCCATCTTCAGCCACCTCTGCCGCCGCAGCCGCCACCACATCTTTCTCTCGTCTCTCCTATCACCATCTGCGATCACGTTCCTTCGCCATTCCTACCGCTGCTCTCCGTCAAGTTTCCTCCCTTCGATCATCTAATTCCGGTTCAAGATTCAATCTTACTGGTCCAAGATTCAATCTTTTTCATCCCAAACCTTTCCTTTTTAATCCCCTTTCAAAACCCACTTCAAGAAATCCACCGTCTCCTAAACCCATCACTGCTTCTTCATCCCCTGAATCAGATAAGGTGGTAATTGTAGATGTAAAGCCCAAAACCCAGGGTGCGAAGCTCATTCCTTTGATTATTTCTGTTTCAATTGGTCTTATAGTCCGATTCTTGGTTCCAAGACCACCTGAAGTTTCTCCTCAAGCATGGCAATTGCTCTCCATTTTCCTCTCAACAATCGCTGGTTTGGTCCTCAGCCCATTGCCAGTAGGTGCATGGGCTTTTCTTGGACTTACCAACCTCAGTTTTGACCAAGACTCTAACCTTTTCAAGCGCCTTTAGTGCCTTCACGAATGAAGTCATCTGGTTAATTGTGATTTCTTTCTTTTTCGCCCGTGGATTTGTCAAGACTGGCTTAGGAGATCGAATTGCCACGTACTTTGTTAAGTGGTTGGGGAAGAGTACTCTTGGTTTGTCATATGGATTGGCCCTGAGTGAGGCTTTGATAGCACCTGCAATGCCCAGCACTACTGCAAGAGCTGGTGGAGTATTTTTGCCTATTATTAAGTCTCTCTCACTTTCAGCTGGAAGTAAGCCTGGTGATCCCTCCTCCAGAAAGCTAGGCTCTTACTTGATCCAATCTCAATTTCAGGTATGCCTTTGCTTTTGCCTGCTATACATGTGTGGTGTGTCACATAATTAGATGGCTTTAATGAAATGTAAAATGTATATACATGAATTGGTACCTAATGATCTTAATTATGGAAGAATTCAATTTAAATACACCAATGGCGAAAATAGTCTTTGAGCTATCAGGTTATAAAAGCCAAGTAGGAGTTGTCTAAGGTGCTTTGAGTTTTCTACCTGAAAAATAAGGCTATTGGCATGCTAAAATAGGTTAAACTATTAGGTTCTATTGATAGGGTAATTGTTATTTTTACAATGTAAGTTTGTATAATTTCAATCTATTATCGAATAGATAAATTTGTAAGCAGCTGTGCTGGATTGAGATGTGTCTCATTTGTTGAGAGAGTCATTGTTCTCACTTCTCAAGAAAGAGTTTTGCTAACCATGAGGAAATTTGCAATTACTGATTCTAAGATAGCTGTGAGTTTATGTTTGAGTGATCTTTGCCTGAAGACTTTGGTATTTATCTTGAATTTGCAACTGAAGACATTATGCATTTGATTATTAAGTATTACTTTATTTTCTTGTTGTGCATCTGTCTCTTTCAAGAACACATTGCATATATGGGGTTAGTATTGCATATAAGGTCCAGTCCTGCTAGTTTAGATGAGCAGTTTCCTTCTGTTGAATAAGCATATATTGTTATGAAATTGTTCATTTTATAACTTATAAGTCTAATAAAGTAGTTATGTGCTTAGCACCCAAGGGTATGACCTAGTGGCAATGAAGTGGAGAAGAACCGTGAGGTCTCAGGTTCAAACCCTCATAGAGACAAAAACACTATGAACTCTTCTCATATGCCTAAGCATTAGTGCGCAAAGTTATCAGTACTTGTGATGGTGGGAGGTAGTAGGTACCCGATCTAATAGTTGAGCATAAGTCTGACCGAGACATTTCATGTACTGTGCCAATCTCATTTAGCAATCGGATGTTAAAGTGCTTCATCAAAATCACATGCGTCAATGCTTTAGTGTCTGCACTCCATGTTTCTTTAAGATTTTTATTTTATTTTATATTCAGTGAAATTTGTACAGTACAGATCTTTGTGTACAGTACAGATCTTTTTCTCCAAGCATCTCATTTTTAGCAGAAGAATATAATCAGTTATGCCCTCCTCCCTCCTTCTGTTGTTTGGTTGTTTTAGCAACCTAGTTAAATATTTTGGTCTGGTACATGTGAATGCTATATTAATGCAACGATAAAGTTTCTCGAAGATGTAGTAGTTTGCGTTATTGTGACATCTCTTTAGATGTCCATCCACTCACAGATCGCTTTTTCATGGTGCATGACAGTGTGCAGGTAATTCTAGTGCTCTTTTCCTAACGGCTGCAGCTCAAAATCTACTCTGCCTCAAACTAGCTGAGGAACTTGGGGTAGTAATTGCAAACCCATGGGTGTCTTGGTTCAAGGCTGCTAGTTTGCCTGCATTTATTTCTCTTTTGGCTACTCCTTTCATCTTGTACAAGCTTTATCCTCCTGAAACCAAAGATACACCAGAAGCCCCCGCTATGGCAGCTAAAAAACTGCAACTTATGGGTCCTGTTACAAAAAATGAATGGGTGATGATTGGCACAATGCTTCTTGCAGTGTCTCTGTGGGTTTTCGGGTAGGTATCGTTTCACAACTGATGTTGATACCTATAATTTCTATTTAGAACTTTTAAATGTTGTGCATTGCCTCTCTATGATGTTAATTTCGGGCAATAGCAAATTATTACAGGGTATAAAGTAATGCATTTCTAGACAAAAAGAGTGAGGCCGCAGAGAGGCAGTTGAGAGTCCTAATGTGTTTAATTTCTGAAACTTCTATGTTGTTCTCAGTGATGCTCTTGGTATTGCGAGTGTTGTTGCTGCAATGCTCGGCTTATCAATCCTCTTGCTGTTGGGAGTGCTTGACTGGGATGACTGTTTAAGTGAAAAATCAGCATGGGATACTTTGGCTTGGTTTGCAGTCCTAGTTGGCATGGCTAGCCAGTTGACAAACCTTGGCATTGTTGGTTGGATGTCTAGTTGTGTAGCAAAATCCCTACAGGCTTTATCGTTGAGCTGGCCAGCTGCATTTGGTGTTCTTCAAGCATCATACTTCTGTATCCACTACTTATTTGCAAGTCAAACAGGCCATGTGGGAGCGTTATACTCTGCATTCCTTGCTATGCATTTGGCATCTGGAGTGCCTGGTGTATTGGCAGCCCTGGCTTTAGCTTACAACACTAATCTATTTGGTGCTTTGACACATTATAGCAGTGGTCAAGCTGCTGTCTATTTTGGAGGTATGTAGCTCTCTTTAACTAATTCTGCTTGACCACAGATGAAAGTTTTTTATTCTTCATTTTCTGTTTGCTGATAAAAGTAAATATTGGAATTAATTGGTAGATATATGATTATTGTTTTGTTTCTTGTGATGGCAGCTGGTTATGTAGATCTCCCGGATGTCTTCAAAATGGGATTTGTAATGGCAATCGTCAATGCTATTATATGGGGAGTCGTTGGAACATTTTGGTGGAAATTCTTGGGTCTATACTGATTCTGCAAGTACATTTTTCCCCATTTATACGTGTTGTGGCATTTTAGCAACGACCTCGATGTTATTGAAGTACAATCTCTATATTAGTGTCAGCATTTCCCCATTGTAATATTCTTTAAAACACGCGGATGAAAAAAAGAATGTATTTTTTTTTTTGCTGTCTGCTACATTTTGGACTATTTCACCTTTGCAGTTTTG

Download sequence region

Download sequence (3.7Kb)

Get flanking sequences on SL2.50ch01

mRNA Solyc01g105540.2.1

Ontology terms

terms associated with this mRNA

GO:0016020 – membrane

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc01g105540.2.1 2-oxoglutarate/malate translocator (AHRD V1 **-- Q9FMF7_ARATH); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter
CCTCTCAAACGATCTATTATGTGGCCATTGTAGTTTCCGCCACCCCAAAGGTCCCTCCCTCACCCTTTTCACATTTCATCTCTTTTCTCTTTTCACTTCACTCTTTGCCGGAGAAAAAAAAATGGAGAGATTGGCACTTCACTCTCCATCTTCAGCCACCTCTGCCGCCGCAGCCGCCACCACATCTTTCTCTCGTCTCTCCTATCACCATCTGCGATCACGTTCCTTCGCCATTCCTACCGCTGCTCTCCGTCAAGTTTCCTCCCTTCGATCATCTAATTCCGGTTCAAGATTCAATCTTACTGGTCCAAGATTCAATCTTTTTCATCCCAAACCTTTCCTTTTTAATCCCCTTTCAAAACCCACTTCAAGAAATCCACCGTCTCCTAAACCCATCACTGCTTCTTCATCCCCTGAATCAGATAAGGTGGTAATTGTAGATGTAAAGCCCAAAACCCAGGGTGCGAAGCTCATTCCTTTGATTATTTCTGTTTCAATTGGTCTTATAGTCCGATTCTTGGTTCCAAGACCACCTGAAGTTTCTCCTCAAGCATGGCAATTGCTCTCCATTTTCCTCTCAACAATCGCTGGTTTGGTCCTCAGCCCATTGCCAGTAGGTACTCTAACCTTTTCAAGCGCCTTTAGTGCCTTCACGAATGAAGTCATCTGGTTAATTGTGATTTCTTTCTTTTTCGCCCGTGGATTTGTCAAGACTGGCTTAGGAGATCGAATTGCCACGTACTTTGTTAAGTGGTTGGGGAAGAGTACTCTTGGTTTGTCATATGGATTGGCCCTGAGTGAGGCTTTGATAGCACCTGCAATGCCCAGCACTACTGCAAGAGCTGGTGGAGTATTTTTGCCTATTATTAAGTCTCTCTCACTTTCAGCTGGAAGTAAGCCTGGTGATCCCTCCTCCAGAAAGCTAGGCTCTTACTTGATCCAATCTCAATTTCAGTGTGCAGGTAATTCTAGTGCTCTTTTCCTAACGGCTGCAGCTCAAAATCTACTCTGCCTCAAACTAGCTGAGGAACTTGGGGTAGTAATTGCAAACCCATGGGTGTCTTGGTTCAAGGCTGCTAGTTTGCCTGCATTTATTTCTCTTTTGGCTACTCCTTTCATCTTGTACAAGCTTTATCCTCCTGAAACCAAAGATACACCAGAAGCCCCCGCTATGGCAGCTAAAAAACTGCAACTTATGGGTCCTGTTACAAAAAATGAATGGGTGATGATTGGCACAATGCTTCTTGCAGTGTCTCTGTGGGTTTTCGGTGATGCTCTTGGTATTGCGAGTGTTGTTGCTGCAATGCTCGGCTTATCAATCCTCTTGCTGTTGGGAGTGCTTGACTGGGATGACTGTTTAAGTGAAAAATCAGCATGGGATACTTTGGCTTGGTTTGCAGTCCTAGTTGGCATGGCTAGCCAGTTGACAAACCTTGGCATTGTTGGTTGGATGTCTAGTTGTGTAGCAAAATCCCTACAGGCTTTATCGTTGAGCTGGCCAGCTGCATTTGGTGTTCTTCAAGCATCATACTTCTGTATCCACTACTTATTTGCAAGTCAAACAGGCCATGTGGGAGCGTTATACTCTGCATTCCTTGCTATGCATTTGGCATCTGGAGTGCCTGGTGTATTGGCAGCCCTGGCTTTAGCTTACAACACTAATCTATTTGGTGCTTTGACACATTATAGCAGTGGTCAAGCTGCTGTCTATTTTGGAGCTGGTTATGTAGATCTCCCGGATGTCTTCAAAATGGGATTTGTAATGGCAATCGTCAATGCTATTATATGGGGAGTCGTTGGAACATTTTGGTGGAAATTCTTGGGTCTATACTGATTCTGCAAGTACATTTTTCCCCATTTATACGTGTTGTGGCATTTTAGCAACGACCTCGATGTTATTGAAGTACAATCTCTATATTAGTGTCAGCATTTCCCCATTGTAATATTCTTTAAAACACGCGGATGAAAAAAAGAATGTATTTTTTTTTTTGCTGTCTGCTACATTTTGGACTATTTCACCTTTGCAGTTTTG

Download sequence (2.0Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc01g105540.2.1	SL2.50ch01:93680539..93683974	571	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc01g105540.2	SL2.50ch01:93680342..93684095	3,754	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc01g105540.2.1.1	SL2.50ch01:93683477..93684095	619	-	n/a
exon	exon:Solyc01g105540.2.1.2	SL2.50ch01:93683098..93683433	336	-	n/a
exon	exon:Solyc01g105540.2.1.3	SL2.50ch01:93681457..93681770	314	-	1
exon	exon:Solyc01g105540.2.1.4	SL2.50ch01:93680794..93681242	449	-	2
exon	exon:Solyc01g105540.2.1.5	SL2.50ch01:93680342..93680655	314	-	n/a
intron	intron:Solyc01g105540.2.1.2	SL2.50ch01:93683434..93683476	n/a	-	n/a
intron	intron:Solyc01g105540.2.1.3	SL2.50ch01:93681771..93683097	n/a	-	n/a
intron	intron:Solyc01g105540.2.1.4	SL2.50ch01:93681243..93681456	n/a	-	n/a
intron	intron:Solyc01g105540.2.1.5	SL2.50ch01:93680656..93680793	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc01g105540

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17704645%2Fdetails feature 17704645

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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