Solanum lycopersicum mRNA Solyc01g109990.2.1

mRNA details  
Name
Solyc01g109990.2.1
Type
mRNA
Length
3,325
Organism
Solanum lycopersicum
Description
RNA-binding protein 28 (AHRD V1 *--- B0X2T7_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait
Location(s)
SL2.50ch01:96807686..96819803
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0003676
  • GO:0000166
Length
12118
Nb exon
20
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc01g109990.2.1 RNA-binding protein 28 (AHRD V1 *--- B0X2T7_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait

CAGAAACAAGAAACGCCATTGCTTCTTGTTCGGTGTTCTTGACAATCGAAACTCCATTGCTTCTTGACAATCATATAGATGGGAAAAAACAAGAAGACGATGTCTGGTGGCGATAGCCAACACTCACCTTCCACTATTTTTGTTAACAATTTACCTTATTCTTTCACTAATGCTCAGTTGGAGGAGACGTTCAGTGAAGTTGGACCCATTAGGCGGTGTTTTATGGTTACCAATAAAGGTTCAAGCGAGCACCGGGGTTTTGGCTTTGTCCAATTTGCATCTGTAGACGATGCTAACCGGTCCATCGAGCTAAAGAATGGATCAGTGGTTGGAGGAAGGAAAATTGGTGTCAAACAGGCTATGCAGCGTGCTCCTCGTGAACAACGGCAATCAAAGGGGGATCAAGAAAGCACTGCAAAAGCAAAAGATGGCAAGGATGGTCCTTCTGCTGAATCAGTTGAATCAGTTGAGGACAAAGAAGCTTCAAACATGGAGGGAACAGGAAGTACCGCACAAGCAAAGGACGGCAAAAACGGTCCTTCTACTGAATCAGCTAAGCTCAAACAAGCTTCAAACCCTCAAAGTATTGCACAAGAAAAAGACGGGAAAGATGGTGCTTCTACTGAAGCAGCTAAGCACAAACAAGCTTCAAGCCGGCAAGGAACAGAGAACTCAGGTAAGCCCGCTAGGAAAAAAAAGGCTACATTGCTTTCCAATGGTGCAGCTGATGATGGAAATTATTCAGGAAAGCAGAGGGTCGCCAGGACAGTTATAATAGGAGGAATTGTAAATGCAAATATGGCAAAAGAGGCTCACCAGCTTGCGGCGGAGTGTGGCACCATATGTTCTATTACTTACCCTCTTCCAAAAGAAGAGATTGAAAATCATGGGCTAGCACATGATGGTTGTCAAATGGATGCTTCATCTGTACTTTTCACTAGTGTCAAATCAGCTCAAGCTTGTGTTGCATCATTACACCAAAAAGAAGTACATGGAGCAACGCTTTGGGCACGACAACTTGGTGGAGAGGGCTCAAAGACTCAACGGTGGAAGCTTATATTGAGGAATCTTCCTTTTAAGGCCAAAGTGAATGAGATAAAAGATATGTTTTCAAAAGTTGGCTTCGTGTGGGATGTGTTTATCCCTAAGAATTTTGAGACAGGGTTATCAAAGGGATTTGCATTTGTGAAATTTACAACGAAGCAGGATGCAGAGAATGCTATTAAGACATTTAATGGGAAAACAATGAATAAACGAACTATTGCGGTTGATTGGGCCGTTTCCAAAAAGGTTTATGCATCTGGTGGTCAATCTTCTGCAACTGCAATAGATGAACAGAGCGCAAAAGATGATAGTGGTAGTGATACGGAGGATGAAGACATTGACATTGATGGAAAATCTCAGCAAGCTGAAGGGGACGAAGATGACTCTGACCTTTTAGAAGAAGATAATCAGACCGAATTTAACTTTGATGAGGAAGCAGACATTGCAAAAAAAATTCTTCAGAACTTTATTTCTCCAACTTCAATAGTGACAGCTACTCCCGCAGATGATATTTCAAGCCCCCAAAAGAAGGGAAAGGATGTTGAAACTATTATCCCCGTGGATGAACCACTTGATGCATCTACTCCGAATAAAGCACTAAATGATGTTTCGGGCAAGGACAAAGAAGTTAAAGATATGCAGAGTGAGGGAGCAGATGATCTGCAGGGGACAGTTTTCATTAGCAACCTTCCTTTTGATGTTGATTATGGAGAAGTCAAACAACGGTTTTCAGCTTTTGGTGAAGTGGAGTACTTTGCTCCAGTTCTTGAACAAGTCACCAAACGACCAAGGGGTACTGGATTTCTCAAATTTAAAACAGCAGCATCTGCTGAAGCTGCTATTTCCGCTGCCAGTGTTGTGGATGGTTTAGGTGTCTTTCTGAAGGGTCGGCAGTTAAAAATTTTAAAGGCCTTGGACAAAAAAGCTGCTCATGATAAGGATTTGCAGAAGACTAAAAAGGAGGACAATGACCATCGCAACCTTTACCTGGCAAAGGAGGGTCTTATTTTGGAGGGCACCCCAGCTGCTGAAGGTGTTTCAGTGGGTGATATGTCAAAGCGCAAGGGGCTGCAAGAAAAGAAGATTATCAAGCTGAAGTCCCCAAATTTCCATGTGTCAAGGACACGGCTGATTATGTACAATGTTCCCAAGTCAATGACTGAAAAACAGCTGAAGACACTTTGCATTGATGCAGTTACTTCTCGTGCTACTAAGCAAAAGCCTGTTATCCGGCAGATAAAGTTTTTGAAGGACGTGAAAAAAGGACAAGCAGTGGCAAAGAATCATTCTCGTGGAGTAGCTTTTCTTGAGTTTTCAGAGCATGAACATGCACTTGTGGCTTTGAGAGTTCTTAACAACAATCCTGAGACTTTTGGTCCTGAGCATCGACCAATAGTGGAGTTTGCTCTTGACAATATCCAAACAATGAAGCTTCGTCAGAAATTTCAGCAGCAAGGTTTTAACAGGAACAAAGAAGATTTGCAGAAGAATGACAATACGAATGAACGGGATACCCGCGATAAACAGTCAAGAAAACGGAAGGCCCCAGGAGAAGATGAAGCAACAAACAAGCGTGTCAGAGGTGTCACTTTAAGGGAAGGCAATGTGTCGTCAGTTTCAGGTAGTAAAGATGGAGATCAACCAAAAAATAAAGGTGTTAAAGGAGCCGCCTTCTCTGCAGAAAAAAGAGATGAGAAGAAGAACAAGAAGGAAGGTAAAAAGCTAGGAGGCACAAAACAGAAGCTAAACGATAATCAAGAAGGAAAAAGGCATGGTGGCTTTGGTAGTGAAAAAACAGGTAATGCTACTCCCAAGGTTGGACAAAGCGAATACGTTGCAGCAAGAGCAACAAAGAGGAAATTTGAAGATAAAACTAACCAACAAAAACAAAGCGTCAGTTTACAGAACCGGAAAAAGGATAAAAAGAAGAAAGATGCAGTTGGACGAGATGGAGTAGACAAGCTAGATATGCTAATTGAACAATATACATCCAAATTCACTCGCGGCAGTTCTAATCAAACTAATAGTAATCAGCAGCGCTCTAAGCAGCTTAAGAGATGGTTCCAATCCTAAACCATTCACAGGTTCTTGTGTAGCTTAATTTTATTGTGATAGTAAGAAAAGTTGTGTTTCATTCTCTTCCTAGCCCCTAAGATCAGGGTTACAGGATTTGAGATGAGGGGATCGAAAATATGCTAAAACGTTCCCAATAGAGAGTTGGTACCTATTCCTTGTAACATTTTCTGAACTACATTTACTGCTATTTTGGCAATTTTCTGGC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc01g109990.2.1SL2.50ch01:96807763..968194651,013+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc01g109990.2SL2.50ch01:96807686..9681980312,118+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc01g109990.2.1.1SL2.50ch01:96807686..96807862177+n/a
exonexon:Solyc01g109990.2.1.10SL2.50ch01:96813321..9681337151+2
exonexon:Solyc01g109990.2.1.11SL2.50ch01:96813500..9681358283+n/a
exonexon:Solyc01g109990.2.1.12SL2.50ch01:96813660..9681371455+n/a
exonexon:Solyc01g109990.2.1.13SL2.50ch01:96814817..96814931115+1
exonexon:Solyc01g109990.2.1.14SL2.50ch01:96816418..96816910493+n/a
exonexon:Solyc01g109990.2.1.15SL2.50ch01:96816981..96817194214+2
exonexon:Solyc01g109990.2.1.16SL2.50ch01:96817289..9681735971+1
exonexon:Solyc01g109990.2.1.17SL2.50ch01:96818301..96818469169+n/a
exonexon:Solyc01g109990.2.1.18SL2.50ch01:96818550..96818679130+1
exonexon:Solyc01g109990.2.1.19SL2.50ch01:96818759..96819516758+n/a
exonexon:Solyc01g109990.2.1.2SL2.50ch01:96807935..9680799561+n/a
exonexon:Solyc01g109990.2.1.20SL2.50ch01:96819647..96819803157+2
exonexon:Solyc01g109990.2.1.3SL2.50ch01:96808157..9680819337+n/a
exonexon:Solyc01g109990.2.1.4SL2.50ch01:96808601..96808731131+2
exonexon:Solyc01g109990.2.1.5SL2.50ch01:96808850..9680894596+1
exonexon:Solyc01g109990.2.1.6SL2.50ch01:96809054..96809218165+2
exonexon:Solyc01g109990.2.1.7SL2.50ch01:96809966..9681005388+2
exonexon:Solyc01g109990.2.1.8SL2.50ch01:96811254..96811387134+2
exonexon:Solyc01g109990.2.1.9SL2.50ch01:96811705..96811844140+1
intronintron:Solyc01g109990.2.1.1SL2.50ch01:96807863..96807934n/a+n/a
intronintron:Solyc01g109990.2.1.10SL2.50ch01:96813372..96813499n/a+n/a
intronintron:Solyc01g109990.2.1.11SL2.50ch01:96813583..96813659n/a+n/a
intronintron:Solyc01g109990.2.1.12SL2.50ch01:96813715..96814816n/a+n/a
intronintron:Solyc01g109990.2.1.13SL2.50ch01:96814932..96816417n/a+n/a
intronintron:Solyc01g109990.2.1.14SL2.50ch01:96816911..96816980n/a+n/a
intronintron:Solyc01g109990.2.1.15SL2.50ch01:96817195..96817288n/a+n/a
intronintron:Solyc01g109990.2.1.16SL2.50ch01:96817360..96818300n/a+n/a
intronintron:Solyc01g109990.2.1.17SL2.50ch01:96818470..96818549n/a+n/a
intronintron:Solyc01g109990.2.1.18SL2.50ch01:96818680..96818758n/a+n/a
intronintron:Solyc01g109990.2.1.19SL2.50ch01:96819517..96819646n/a+n/a
intronintron:Solyc01g109990.2.1.2SL2.50ch01:96807996..96808156n/a+n/a
intronintron:Solyc01g109990.2.1.3SL2.50ch01:96808194..96808600n/a+n/a
intronintron:Solyc01g109990.2.1.4SL2.50ch01:96808732..96808849n/a+n/a
intronintron:Solyc01g109990.2.1.5SL2.50ch01:96808946..96809053n/a+n/a
intronintron:Solyc01g109990.2.1.6SL2.50ch01:96809219..96809965n/a+n/a
intronintron:Solyc01g109990.2.1.7SL2.50ch01:96810054..96811253n/a+n/a
intronintron:Solyc01g109990.2.1.8SL2.50ch01:96811388..96811704n/a+n/a
intronintron:Solyc01g109990.2.1.9SL2.50ch01:96811845..96813320n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17709671%2Fdetails feature 17709671
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