Solanum lycopersicum mRNA Solyc02g078880.2.1

mRNA details  
Name
Solyc02g078880.2.1
Type
mRNA
Length
2,159
Organism
Solanum lycopersicum
Description
ATP-dependent RNA helicase (AHRD V1 ***- C4QVZ6_PICPG); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch02:43519839..43525716
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005524
Length
5878
Nb exon
11
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc02g078880.2.1 ATP-dependent RNA helicase (AHRD V1 ***- C4QVZ6_PICPG); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

CTAGCACAGTTGGGTTGAAGAAAAACTAGCGAGTGCGGCGGGCATGGCGTCGGCGAATCAGAACAAAGCTTTAACGAATACTCGTTTCTCCGACCTCGAACCACGGCTTGCTGAGCCAGTTTTGGAAGCCCTAACCAACTCCGGCTTCGAGTTCTGTACTCCTGTTCAGGCCGCCACCATACCCTTACTCTGCAGCTACAAGGATGTCACCGTTGACGCCGCCACTGGCTCTGGTAAAACCCTAGCCTTCGTTTTACCTGTGGTTGAGATCATCCGTCGATCCTCTTCTAATCCCAAACCTCACAAGGTAATGGGTATAATTATATCACCAACCAGGGAGTTGTCGTCACAAATATTTCATGTTGCTCAGCCATTCATTTCCACATTAGCAAATGTTAGGCCTATGCTTCTTGTTGGAGGATTAGAAGTAAAGGCAGATATCAAAAAGATAGAGGAGGAAGGAGCAAATTTGTTGATTGGGACACCTGGGAGGCTATATGACATAATGGAGCGCCTGGATATACTGGACTTTCGGGATCTTGAGATCCTGATATTAGACGAGGCTGATAGGCTATTAGGCATGGGATTCGAGAAGCAGCTAAATTCAATCATTTCTCGTTTACCTAAGCTTCGTAGAACGGGTCTCTTCTCTGCTACTCAAACTGAAGCAGTTGAAGAACTATCAAAGGCAGGATTGCGAAATCCTGTCAGGGTTGAAGTTCGGGCAGAAGCAAAACAGTTGAGCGGATCTGCATCTGGGAATTCGACCTCGTCAAAAACACCTTCTGGCCTTCATATTGAGTATTTGGAATGTGAAGCGGACAAGAAATCATCGCAGCTTGTACACCTCATAACAAAGAACAAGTCAAAAAAAATTATAGTTTATTTCATGACTTGTGCTTGTGTTGATTATTGGGGAACTGTTCTTCCACGTCTCTCTTGTCTGAAAAGTTTTTCATTGATCTCTCTTCATGGAAGGATGAAGCAGAGTGCAAGGGAGAAAGCACTAGCATCATTTACATCTCTTTCCAGTGGTGTTCTTTTATGCACAGATGTAGCAGCTCGTGGACTTGATATTGCAGGTGTTGATTATATAATACAGTATGACCTTCCTCAGGATGATAAAATGTTCATACACAGAGTAGGCCGAACAGCTAGGCTGGGCCGACAAGGTAGTGCTGTTGTTTTCCTATTACCAAAGGAGGAAGCATATGTGGAGTTCTTGCGTATAAAAGACGTTTTCTTAGAAGAGGGAGAATGTGCCTCTGATGCTCCTGATATTATAGATGAAATACGATCAGCAGCAAAGAAAGATCGTGATGTAATGGAGAAAGGACTCAGAGCCTTTGTATCATACATCCGTGCATATAAAGAGCACCACTGCTCTTACATCTTAAGGTGGAAGGAGCTTGAGATCGGGAAGCTGGGCATGGGATATGGTCTTCTGCAGCTTCCTTCTGTGCCTGATGTGAAACATCATTCTCTTTCTACAAAGGGATTCACTGCTGTTGAAGATATCAACCTGGACAACATCAAGTTTAAGGACAAGTCGAGAGAGAAGCAAAGAAAGAAAAATTTACAAGTGAAAAAAGCTGCAATGGCACAACAACAAGAACAGAAGACACAGAGACTTAAAAAAGAAGCAAACTCTACAGCAAGTGCCTTGAGAAAGAGAACTGCCAAACAAAGACGTGCTACACAGTTGGTTGAAGATGAAGATGAGATCACACGGGAGTACCGGTTATTGAAAAAGCTAAAAAAGGGAGCTATCGATGAGAATGAGTTTGCAAAATTGACTGGCACAGAAGACTTGCTTTCTGACATATGATTTAAACATCTAGGCACAAATTCTGCTGGTCTAATGCATTCATATGTGGTGGTGATTGCAGATGTTACACTAGTTACCAAGCAAAGAAAGATAAGTATATGTCTGGTCTGGTCACCCAGAAACTGAATTTCATCAAGCATCCACCACCTtacattggaTTGCAGATCCATGGATGGGCAGCCAAATTTTGTACTACTTTTGTAATTCATATATCATGATACACTTAATTTTATCAATTACTTAGCTGAATGATAAATGTTTTATTTTTTTGTATTGTTCGTAGGATATAATTTTTGAATGAATTTAAGAGTAACATACGAGATTAATCAAA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc02g078880.2.1SL2.50ch02:43520169..43525673595-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc02g078880.2SL2.50ch02:43519839..435257165,878-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc02g078880.2.1.1SL2.50ch02:43525410..43525716307-n/a
exonexon:Solyc02g078880.2.1.10SL2.50ch02:43520548..43520691144-1
exonexon:Solyc02g078880.2.1.11SL2.50ch02:43519839..43520455617-n/a
exonexon:Solyc02g078880.2.1.2SL2.50ch02:43524208..43524444237-n/a
exonexon:Solyc02g078880.2.1.3SL2.50ch02:43523295..43523552258-n/a
exonexon:Solyc02g078880.2.1.4SL2.50ch02:43523117..4352319680-1
exonexon:Solyc02g078880.2.1.5SL2.50ch02:43522899..43523004106-n/a
exonexon:Solyc02g078880.2.1.6SL2.50ch02:43522665..43522778114-n/a
exonexon:Solyc02g078880.2.1.7SL2.50ch02:43521934..4352203299-n/a
exonexon:Solyc02g078880.2.1.8SL2.50ch02:43521731..4352182090-n/a
exonexon:Solyc02g078880.2.1.9SL2.50ch02:43520770..43520876107-1
intronintron:Solyc02g078880.2.1.10SL2.50ch02:43520692..43520769n/a-n/a
intronintron:Solyc02g078880.2.1.11SL2.50ch02:43520456..43520547n/a-n/a
intronintron:Solyc02g078880.2.1.2SL2.50ch02:43524445..43525409n/a-n/a
intronintron:Solyc02g078880.2.1.3SL2.50ch02:43523553..43524207n/a-n/a
intronintron:Solyc02g078880.2.1.4SL2.50ch02:43523197..43523294n/a-n/a
intronintron:Solyc02g078880.2.1.5SL2.50ch02:43523005..43523116n/a-n/a
intronintron:Solyc02g078880.2.1.6SL2.50ch02:43522779..43522898n/a-n/a
intronintron:Solyc02g078880.2.1.7SL2.50ch02:43522033..43522664n/a-n/a
intronintron:Solyc02g078880.2.1.8SL2.50ch02:43521821..43521933n/a-n/a
intronintron:Solyc02g078880.2.1.9SL2.50ch02:43520877..43521730n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17729523%2Fdetails feature 17729523
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