Solanum lycopersicum mRNA Solyc02g080260.2.1

mRNA details  
Name
Solyc02g080260.2.1
Type
mRNA
Length
2,532
Organism
Solanum lycopersicum
Description
Homeobox leucine-zipper protein (AHRD V1 ***- Q8H962_ZINEL); contains Interpro domain(s) IPR002913 Lipid-binding START
Location(s)
SL2.50ch02:44532858..44536817
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006355
  • GO:0045449
Length
3960
Nb exon
11
Sifter term
GO:0043565
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc02g080260.2.1 Homeobox leucine-zipper protein (AHRD V1 ***- Q8H962_ZINEL); contains Interpro domain(s) IPR002913 Lipid-binding START

ATGTTTAATAACCACCAGCACTTGCTCGATATATCGTCCTCAGCTCAACGAACACCTGATAACGAGTTGGATTTCATTCGTGATGAAGAGTTTGATAGCAACTCTGGTGCTGATAACATGGAAGCTCCCAATTCAGGTGATGACGATCAAGCTGATCCAAACCAACCTCCAAACAAGAAGAAGCGTTATCATCGCCACACTCAGAATCAGATTCAGGAAATGGAGTCCTTTTACAAGGAATGCAATCATCCAGATGACAAGCAAAGGAAGGAATTGGGAAGAAGACTTGGTTTGGAGCCATTACAAGTGAAATTTTGGTTCCAGAACAAGCGTACTCAGATGAAGGCTCAACATGAGCGATGTGAGAACACACAGTTGAGGAATGAAAATGAGAAGCTTCGCGCTGAGAACATAAGGTACAAAGAAGCTTTGAGTAATGCAGCATGCCCAAATTGTGGAGGGCCAGCAGCTATAGGAGAGATGTCATTTGATGAGCATCAGTTGAGGATTGAAAATGCTCGTCTTAGAGATGAGATTGACAGGATAACTGGAATAGCTGGAAAGTATGTTGGTAAATCAGCCCTTGGATATTCTCATCAACTTCCTCTTCCTCAGCCCGAAGCTCCTCGGGTTCTGGATCTTGCTTTTGGGCCTCAATCGGGCCTGCTTGGAGAAATGTACGCTGCTGGTGACCTTCTAAGAACTGCTGTTACGGGCCTTACAGATGCTGAGAAGCCCGTGGTCATTGAGCTTGCTGTTACTGCAATGGAGGAACTTATAAGGATGGCTCAAACTGAAGAGCCATTATGGTTGCCAAGCTCAGGCTCTGAGACTTTATGTGAGCAAGAATATGCTCGTATTTTCCCTCGAGGCCTTGGACCTAAGCCAGCTACACTCAATTCTGAAGCCTCACGAGAATCTGCTGTTGTGATTATGAATCATATCAATTTAGTTGAGATTTTGATGGATGTGAACCAATGGACTACTGTTTTTGCTGGTCTGGTGTCAAAAGCAATGACTCTTGAAGTCTTATCAACTGGTGTCGCAGGAAATCACAATGGAGCATTGCAAGTGATGACAGCAGAATTTCAAGTTCCATCTCCACTTGTTCCAACTCGGGAGAACTATTTCTTAAGATACTGTAAACAACATGGTGAAGGGACTTGGGTAGTGGTTGATGTTTCCCTGGACAACTTGCGCACTGTTTCAGTTCCGCGTTGCAGAAGAAGGCCATCTGGTTGTTTAATCCAAGAAATGCCAAATGGTTACTCAAGGGTTATATGGGTTGAACACGTTGAGGTGGATGAAAATGCTGTCCATGACATCTACAAACCTCTTGTCAATTCTGGGATTGCATTTGGAGCAAAACGCTGGGTAGCAACTTTAGATAGACAATGTGAACGCCTTGCAAGTGTGTTGGCGCTTAACATCCCAACAGGAGATGTTGGAATCATTACTAGTCCAGCTGGTCGAAAGAGTATGCTAAAACTTGCTGAGAGAATGGTGATGAGCTTTTGTGCTGGAGTTGGTGCATCGACAACTCACATATGGACAACTTTGTCTGGAAGTGGTGCGGATGATGTTAGAGTCATGACTAGGAAGAGTATCGATGATCCAGGGAGACCTCCTGGTATTGTGCTGAGTGCTGCAACATCTTTTTGGCTTCCAGTTTCTCCTAAGAGAGTGTTTGATTTTCTCCGCGATGAGAACTCTAGAAATGAGTGGGATATTCTTTCAAATGGTGGGATTGTTCAGGAAATGGCACACATTGCAAATGGTCGTGATCCAGGAAACTGTGTTTCTCTACTCCGTGTCAATACTGGAACAAACTCTAACCAGAGTAACATGCTGATACTCCAAGAGAGCACAACTGATGTAACAGGATCTTACGTCATTTACGCTCCAGTTGATATTGCTGCAATGAACGTGGTGTTAGGTGGGGGTGACCCTGACTATGTTGCTCTGTTGCCATCTGGTTTTGCTATTCTTCCAGACGGACCGATGAATTATCATGGTGGAGGTAATTCAGAAATTGATTCTCCTGGTGGATCGCTACTAACTGTAGCATTTCAGATATTGGTTGATTCAGTCCCAACTGCAAAGCTTTCCCTTGGCTCTGTTGCGACTGTTAATAGTCTCATCAAATGCACCGTTGAAAAGATCAAAGGTGCTGTAACTTCCGCAAATGCGGCAGGTGGTCTTGGATGGGGGAGAGTTGAAAGAAGTTACAAGTTAGATGAAGGGGAAGGGAGCTAGTGGAGAAGGCAACTTAAAGGAAATCCTTGCAGGTGGTGATTGTTTTTTTGGCAAAAAAACATTTCACTATCCTGTAAGGATGTAGTTTTTTTTTGGTTTTAATATATAGGGTTTAGGGTAGACTTTGCCAATGTTATATTGGTATATGTCAAGAATATTATAAAACTAAGCTAGCAAACAAAGCTTTATTTTGTTTTGAACCCTTTTGCTTTAAGGGTTAATTGTTGGAACAAGTTAGTTCTCTATGTTTTAAAAAGAAGTTTAGTTTGACTTCTG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc02g080260.2.1SL2.50ch02:44532857..44536541752+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc02g080260.2SL2.50ch02:44532858..445368173,960+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc02g080260.2.1.1SL2.50ch02:44532858..44533084227+n/a
exonexon:Solyc02g080260.2.1.10SL2.50ch02:44535885..44536253369+n/a
exonexon:Solyc02g080260.2.1.11SL2.50ch02:44536473..44536817345+n/a
exonexon:Solyc02g080260.2.1.2SL2.50ch02:44533170..44533287118+1
exonexon:Solyc02g080260.2.1.3SL2.50ch02:44533449..44533637189+n/a
exonexon:Solyc02g080260.2.1.4SL2.50ch02:44534060..44534497438+n/a
exonexon:Solyc02g080260.2.1.5SL2.50ch02:44534581..44534682102+n/a
exonexon:Solyc02g080260.2.1.6SL2.50ch02:44534792..44534992201+n/a
exonexon:Solyc02g080260.2.1.7SL2.50ch02:44535071..44535245175+n/a
exonexon:Solyc02g080260.2.1.8SL2.50ch02:44535344..44535615272+2
exonexon:Solyc02g080260.2.1.9SL2.50ch02:44535713..4453580896+n/a
intronintron:Solyc02g080260.2.1.1SL2.50ch02:44533085..44533169n/a+n/a
intronintron:Solyc02g080260.2.1.10SL2.50ch02:44536254..44536472n/a+n/a
intronintron:Solyc02g080260.2.1.2SL2.50ch02:44533288..44533448n/a+n/a
intronintron:Solyc02g080260.2.1.3SL2.50ch02:44533638..44534059n/a+n/a
intronintron:Solyc02g080260.2.1.4SL2.50ch02:44534498..44534580n/a+n/a
intronintron:Solyc02g080260.2.1.5SL2.50ch02:44534683..44534791n/a+n/a
intronintron:Solyc02g080260.2.1.6SL2.50ch02:44534993..44535070n/a+n/a
intronintron:Solyc02g080260.2.1.7SL2.50ch02:44535246..44535343n/a+n/a
intronintron:Solyc02g080260.2.1.8SL2.50ch02:44535616..44535712n/a+n/a
intronintron:Solyc02g080260.2.1.9SL2.50ch02:44535809..44535884n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17730974%2Fdetails feature 17730974
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