Solanum lycopersicum mRNA Solyc03g025280.2.1

mRNA details  
Name
Solyc03g025280.2.1
Type
mRNA
Length
3,336
Organism
Solanum lycopersicum
Description
RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait
Location(s)
SL2.50ch03:2715367..2733398
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0006396
  • GO:0003676
  • GO:0000166
Length
18032
Nb exon
17
Sifter term
GO:0005515
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g025280.2.1 RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait

TGAAGAACAAATCTCATCAAAGAAAAACTCTGGAAGAACAAAAGGGGTGCCATTCAAGTTAATTGCTTGATCGATACTTTGTTCATTGATGTTTTTCTGAACCGAAACCCGAATTTCTGTTTTCCAATTGAAGGAGTAGTATCTGGTGAGAAGATGAGTGCTCGGAAGAAGACCCCTTTCCAGAAGCACAGAGAAGAGGAAGAGGCAAAGAAAAAGAGGGCAGAAGATGAAACAGCTCGTCTGTATCAAGAGTTTGTGGAATCGTTCCAAGCGGACAGTACACCAGGTTCTAAGGCATTTGTTAGAGGAGGAACCATCAATCCAAATGATAAATTGAAGATGGATTCTCAAGGTGGAAATTCTAAAGATGAGGGGTCAGGTTTAAAGAAGGGAAGTAGGTATGTGCCTTCTTTCTTACCACCTCCTATGGCAACTAAGGGCAGAGATCATGAGAAGAAGAAGGAGGACAAGCCGAGGGAAAAAGAGAAGGGCAAGGCTAGGAACATTGATAATTTTATGGAGGAACTGAAACATGAGCAAGAAATGAGGGAAAGGCGTAACCAAGACCGTGAACAGTGGCGTGATCGTCATACTGAAAATTCTGCTCCATCTAGTCGGTTTGATGAACTGCCCGATGACTTTGATCCTAGTGGAAGGCCTGGATCATTTGATGATGGAGACCCACAAACGACAAATCTCTACGTAGGAAATCTATCACCTCAGGTTGATGAGAATTTTCTTTTGCGCACATTTGGGAGATTTGGCCCCATTGCAAGTGTAAAAATAATGTGGCCAAGGACTGAAGAGGAAAGAAGGCGACAGAGGAATTGCGGTTTTGTAGCTTTCATGAATAGAGCTGATGCTCAGGCTGCAAAAGATGAGATGGAAGGAGTTATTGTTTATGAATATGAGTTGAAGATTGGGTGGGGTAAATCTGTCTCTCTGCCTTCTCAAGCACTCCCTGCTCCTCCTCCAGGACATATGGCTATCAGGAGTAAGGAGGGTGCAACTGTTATCTTATCGGGTCCATCAGGTCCTCCAGTTACAACTGTTCCAGGCCAGAATTCTGAGTTGGTTCTCACTCCAAATGTACCTGATATTATGGTTATTCCACCAGAGGATGATCATCTGCGCCATGTTATTGATACAATGGCTCTGTGTGTTCTCGACGGAGGTTGTGCTTTTGAACAAGCCATAATGGAGCGAGGCCGTGGAAATCCTCTCTTCAGTTTCTTGTTTGAGCTTGGCTCGAAGGAGCATACTTACTATGTTTGGAGGCTCTATTCTTTTGCTCAGGGAGATACTCTTCAACGGTGGAGGACAGTCCCTTTCATCATGATAACTGGTAGTGGGAGGTGGATACCACCCTCTCTACCAACACCGAAAGGAGCTGATCATGAAAAAGAAGCTGGGAGCACATATGCTGCTGGAAGAAGCAGGCGAGTGGATGTTGAACGGACATTGACTGATGCTCAGAGGGATGAATTTGAGGATATGCTCCGTTCATTGACACTAGAAAGAAGTCAAATAAAAGAAGCAATGGGTTTTTCTTTGGACAACGCTGATGCTGCTGGAGAGGTTGTTGAAGTTTTGACAGAGTCGTTGACACTAAAGGAAACTCCAATACCAACAAAAGTTTCTAGGCTCATGCTTGTCTCTGATATTCTTCATAATAGTAGCGCTCCTGTGAAGAATGCATCTGCTTATCGCACCAAATTCGAAGCCTCTTTACCAGACATAATGGAAAGCTTCAATGATCTATATCGAAGTATAACAGGGCGAATTACTGCCGAGGCACTTAAAGAGAGAGTTCTGAAAGTGCTTCAAGTATGGGCTGATTGGTTTTTGTTTTCGGATGCCTATGTCAATGGTTTACGAGCTACCTTTCTTCGAACCGGGAACTCTGGTGTGACCCCCTTCCATTCTCTGTGTGGTGATGCACCTGACGTGGAGCAAAGGACCAGCTCTGATGATGCAGGTGATGGCGGCAAAGTTAACCCAGATGGTGCTTTGGCAATTGGCAAAGGAGCTGCGATGAAGGAACTGTTGAGCCTTCCACTTACGGAGCTAGAAAGACGATGCAGGCACAATGGTTTATCTATCGTAGGTGGTAGGGAAATGATGGTTGCTCGGTTACTTTATCTGGAAGAAGCTGAAAAGCAGAGGGGTCATGAACTAGATGAAGATTTGAAATTTGCGAGCCATTCAAGTTCTGCTAGGTTTCCCAGTACTCGGAAAGATAGCAACCTTGAGTTGGACAGGATGGCTCCTTCCGAACGGAACAGTCAAATGGATTATGACGTACAACTCAAACAAAGAGAGTCTGTATCTTCACACCAAATAAATTCTGCTCCACACTATAATTCAATTGACTTCTCCAGTGACGGCAAAAGTGAGACAATTTTGCCTACATCTAAATGGGCCAGAGAGGATGATGAAAGTGATGATGAACAAAAGAGAAGTTCTAGGGACCTGGGGTTGACATATTCATCTTCTGGAAGTGAGAATGCTGGTGATGGGCTTAGCAAGATCAAGGATGCAGAGCTTACAACGGACACAGGCAATTCAGCATACCCGGAAAGTGGAATGAACGAAGAGTTGAGGCAAAAGCTGAGGCGTCTTGAGGTTGCATTGATTGAATATCGTGAATCTCTTGAAGAACAAGGAATAAAAAATCCGGATGAAATTGAGAGGAAAGTTGAAATCCATCGGCAATGCCTACAATCTGAATATGGTTTATTGAATTTCAGCGAAGATACATCAAAAAAAGGAGGCAGGTCATCTTCGGAGAGGAAAGAGAAAAGAGACGATGCTCGTGAAGCTTCAAGGAAGCGGCAGCGCAGTAGGAGCAGAAGTGGAAGCCCTCAGTGGAAATCATCCAGCAGAGACCGCGATAGTGATAGAGAAAAGCGTCGTGATAGGGGAAGGAAGAGTGGAAGCAGGGAGAGAGATGATCATGATAGAGACAAATCTAGGGAAAGGAGACGGGCCAGATGAATACATATGCACTGTGCAAAATGACCATAAATACAGAGTAGTTGCACTATCATTCCTTGGCACAGATGCATTTGAGCATTTTATCTTTGCCGGGTGGCAGGCAAGGTTGCACGATGACCCTCGTTGAAGTAAGGTCCTCTTCTTTTGGTATTCGCTATGCTATGCGCCACAAAGAGAAAACAATGTTTCCGTATTCAGCTCTATGGTCTAGCAAATTGTACAATTGCAGAGAATCTCATGAACGGCTGTAACTACATCTTACTTTATGCTTCAGATTTTACCTGCATTTGCTAATGCGTTTACTGGAGATTTTGTACCTTTCATCTATCTATATTGGAC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g025280.2.1SL2.50ch03:2715519..2733059948+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g025280.2SL2.50ch03:2715367..273339818,032+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g025280.2.1.1SL2.50ch03:2715367..2715582216+n/a
exonexon:Solyc03g025280.2.1.10SL2.50ch03:2728567..2728788222+n/a
exonexon:Solyc03g025280.2.1.11SL2.50ch03:2729155..272921359+n/a
exonexon:Solyc03g025280.2.1.12SL2.50ch03:2729526..272961085+n/a
exonexon:Solyc03g025280.2.1.13SL2.50ch03:2729724..2729861138+1
exonexon:Solyc03g025280.2.1.14SL2.50ch03:2730087..2730311225+n/a
exonexon:Solyc03g025280.2.1.15SL2.50ch03:2730416..2731215800+n/a
exonexon:Solyc03g025280.2.1.16SL2.50ch03:2731720..2731886167+n/a
exonexon:Solyc03g025280.2.1.17SL2.50ch03:2732833..2733398566+1
exonexon:Solyc03g025280.2.1.2SL2.50ch03:2715664..2715799136+n/a
exonexon:Solyc03g025280.2.1.3SL2.50ch03:2715951..271599646+n/a
exonexon:Solyc03g025280.2.1.4SL2.50ch03:2720567..272062761+2
exonexon:Solyc03g025280.2.1.5SL2.50ch03:2720718..2720864147+1
exonexon:Solyc03g025280.2.1.6SL2.50ch03:2721806..2721922117+n/a
exonexon:Solyc03g025280.2.1.7SL2.50ch03:2722013..2722178166+n/a
exonexon:Solyc03g025280.2.1.8SL2.50ch03:2723725..2723837113+n/a
exonexon:Solyc03g025280.2.1.9SL2.50ch03:2724267..272433872+2
intronintron:Solyc03g025280.2.1.1SL2.50ch03:2715583..2715663n/a+n/a
intronintron:Solyc03g025280.2.1.10SL2.50ch03:2728789..2729154n/a+n/a
intronintron:Solyc03g025280.2.1.11SL2.50ch03:2729214..2729525n/a+n/a
intronintron:Solyc03g025280.2.1.12SL2.50ch03:2729611..2729723n/a+n/a
intronintron:Solyc03g025280.2.1.13SL2.50ch03:2729862..2730086n/a+n/a
intronintron:Solyc03g025280.2.1.14SL2.50ch03:2730312..2730415n/a+n/a
intronintron:Solyc03g025280.2.1.15SL2.50ch03:2731216..2731719n/a+n/a
intronintron:Solyc03g025280.2.1.16SL2.50ch03:2731887..2732832n/a+n/a
intronintron:Solyc03g025280.2.1.2SL2.50ch03:2715800..2715950n/a+n/a
intronintron:Solyc03g025280.2.1.3SL2.50ch03:2715997..2720566n/a+n/a
intronintron:Solyc03g025280.2.1.4SL2.50ch03:2720628..2720717n/a+n/a
intronintron:Solyc03g025280.2.1.5SL2.50ch03:2720865..2721805n/a+n/a
intronintron:Solyc03g025280.2.1.6SL2.50ch03:2721923..2722012n/a+n/a
intronintron:Solyc03g025280.2.1.7SL2.50ch03:2722179..2723724n/a+n/a
intronintron:Solyc03g025280.2.1.8SL2.50ch03:2723838..2724266n/a+n/a
intronintron:Solyc03g025280.2.1.9SL2.50ch03:2724339..2728566n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17752451%2Fdetails feature 17752451
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