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Solanum lycopersicum mRNA Solyc03g052980.2.1

mRNA details  
Name
Solyc03g052980.2.1
Type
mRNA
Length
2,360
Organism
Solanum lycopersicum
Description
ATP dependent RNA helicase (AHRD V1 **** B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch03:21381570..21388890
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005524
Length
7321
Nb exon
7
Sifter term
GO:0004004
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g052980.2.1 ATP dependent RNA helicase (AHRD V1 **** B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

CATCTTCTTTCCGATTTTTTAGTTTCTCTGTCCGAATTTTTTCTTATATTCTTCTTCCTTCTTTGTCAGCGCGCGCTAGGGTTTCTCCATTCTCTCTCTAAAGGTTTTGGACTGCTGAATCTATTCTAAACAGATCTAAGTAGAGTGTTTTGAAGAAGAAGATTTCTGATTTTTGCTGATTACGATTTTGAACTAAGAACTTTTTTTTGATAATGAGGAACTCATGGGCAGATTCTGTTGAGAATGTAGCTACTGATAATGGTGGGCCTAGTGGCGCCAGTGGAGCTTCTGCTTCTACGAGGAGATCATCTTATGTCCCACCGCATCTTCGCAACAGACCAATGACAGCGGAACCTCTAGCTCCATCGCACGGTGGCCCACCTTCGGGTAATGACCGCTCAGGGTTTAATGGACCAACTAGTGGGCCTCGATGGGGTGGTTCTAGGCCAGATTACGGACGCCAAGGGGGGTATGGTGGTGGTGGAAGAGGAGGTGGTTGGGGTGGCAGAGGAGGTGGTTGGGGGAGAGAGCGGGAAGTTAACCCGTTTGGTAATGATGCAGATGTGGACTTGGAGCAATCGTTTGATCAAGAGAATACTGGTATAAATTTTGATGCTTATGAGGATATTCCAGTGGAAACAAGTGGAGAAAATGTGCCACCTCCTGTTAATACATTTGCAGAGATAGATTTAGGGGAGGCCGTTAACTTGAATATTAGGAGGTGCAAATATGTCAAGCCAACTCCTGTCCAGCGATATGCAATTCCCATCTCCTTAGCAGGACGAGATCTCATGGCCTGTGCCCAGACTGGATCAGGCAAGACAGCTGCCTTTTGTTTCCCAATTATTAGTGGAATCATGAGGGGGCATTTTCCGCAACGGCCTCATGGGTCGCGGACAGTTTTCCCCCTTGCTCTTATTCTCTCACCAACAAGAGAGCTCTCAATGCAGATACACGAGGAAGCTAAAAAGTTCTCTTATCAGACTGGTGTAAGAGTGGTAGTGGCCTATGGTGGAGCCCCGATTAATCAACAGCTCAGAGAGCTTGAGAGAGGTGTTGATATTCTTGTGGCAACTCCTGGAAGACTGGTCGATTTACTTGAGAGAGCAAAAGTTTCATTACAGATGATTAGATATTTAGCTCTCGATGAGGCAGATCGTATGCTGGACATGGGATTCGAACCTCAAATCAGAAGGATAGTGCAGCAAATGGATATGCCTCCACCTGGTGAAAGACAGACTATGCTGTTCAGTGCCACATTCCCAAAAGAGATTCAGAGACTGGCATCTGATTTTCTTGCAAACTACATATTTTTGGCAGTTGGGCGGGTTGGTTCTAGTACTGATTTGATTGTTCAGCGAGTTGAGTTTGTGCATGATGTTGACAAGAGAAGCCATCTTATGGATCTACTTCATGCACAGATGGCTAATGGGGTTCATGGCAAGCATTCTCTAACTTTGGTATTTGTTGAAACAAAGAAGGGTGCTGATGCATTGGAGCATTGGTTGTGTATTAATGGATTTCCTGCAACTGCTATTCATGGTGATAGGACTCAGCAGGAAAGGGAGCAAGCATTGAGAACATTCAAGAGAGGAGATACCCCAATTTTAGTTGCAACGGATGTGGCCGCTCGAGGCCTTGATATCCCTCATGTTTCTCATGTTATAAACTTTGACCTTCCTAATGACATTGATGATTATGTGCATCGTATAGGCAGGACAGGTCGTGCAGGCAAGACTGGATTAGCAACTGCTTTCTTTAATGATGGTAACCTTTCCATGGCCAAACCCCTAGCTGACTTGATGCAAGAAGCTAATCAGGATGTACCTGAATGGTTGACTCGTTATGCTAGCCGTTCATCATTCGGAGGAGGCAGAAACAGGCGAGCTGGCGGAGGGCGTTTTGGTGGGCGTGACTTCAGGAGGGATTCGTCGTACAATAGAAGTGGAGGGGGAGGTGGTATGAATTACTATGATGGAGGTAATAGTAGTGGCGGTTATGGCAATTATAGTGGGGGATATGGTCCTGGAGTAACTAGTGCTTGGGACTAGCTTCCTCTAAACTTATAATACCTATACTTTCCTGCAGTTGTATATTACTTATCAACAAATTTGGATTATGATGTTTTGGCAGTGGGAAACAGGGTTGAGTTCTTGTTGTTTTGTGGTCCTATAGGGGACAACTGCAAGATTGTTATGGTAGTTAGATTGGCAATTGGAGACCACCAGCAGACAGCTTTTGTCCAACAGTTCAATGATGCCTTTGTTTAATATAATATTATTTCGTGACTTCACCTCTTTTTGTTTTTTGAAATGCATATGAATAGTAATATTGCAAACCACAAGGGAGGTTAGTATTTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g052980.2.1SL2.50ch03:21381878..21388412613-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g052980.2SL2.50ch03:21381570..213888907,321-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g052980.2.1.1SL2.50ch03:21388788..21388890103-n/a
exonexon:Solyc03g052980.2.1.2SL2.50ch03:21387675..21388521847-n/a
exonexon:Solyc03g052980.2.1.3SL2.50ch03:21387477..2138756084-n/a
exonexon:Solyc03g052980.2.1.4SL2.50ch03:21384072..21384314243-n/a
exonexon:Solyc03g052980.2.1.5SL2.50ch03:21383530..21383697168-n/a
exonexon:Solyc03g052980.2.1.6SL2.50ch03:21382890..21383003114-n/a
exonexon:Solyc03g052980.2.1.7SL2.50ch03:21381570..21382370801-n/a
intronintron:Solyc03g052980.2.1.2SL2.50ch03:21388522..21388787n/a-n/a
intronintron:Solyc03g052980.2.1.3SL2.50ch03:21387561..21387674n/a-n/a
intronintron:Solyc03g052980.2.1.4SL2.50ch03:21384315..21387476n/a-n/a
intronintron:Solyc03g052980.2.1.5SL2.50ch03:21383698..21384071n/a-n/a
intronintron:Solyc03g052980.2.1.6SL2.50ch03:21383004..21383529n/a-n/a
intronintron:Solyc03g052980.2.1.7SL2.50ch03:21382371..21382889n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17757525%2Fdetails feature 17757525
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