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Solanum lycopersicum mRNA Solyc03g082400.2.1

mRNA details  
Name
Solyc03g082400.2.1
Type
mRNA
Length
1,815
Organism
Solanum lycopersicum
Description
Polyadenylate-binding protein (AHRD V1 *-** D3TN92_GLOMM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1
Location(s)
SL2.50ch03:52346358..52352266
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0003676
  • GO:0000166
Length
5909
Nb exon
12
Sifter term
  • GO:0005515
  • GO:0003723
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g082400.2.1 Polyadenylate-binding protein (AHRD V1 *-** D3TN92_GLOMM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1

GGCGTGGCGAAACGGACCATCCGAAGAAGCTCGTCTGTTTTCTCTATGAGCTAAATTCATCTCTCTCGCGTCATCACTACAAAGATAAAGAAAATTTTGTTCTATTTCCATTTTCCCAGCTCACCATCTTTGAGTTTGGATTTTCTTCTTTGATTAATGGAGTCCACCGCTTAGACCAGCAGAACCCGAAATTGGGAAAAAGGGTTAAAGAAGAAGGAGAAAAAGGAGCAGTCTTGGGTACTGTGAGACATAGTTGTTACTGAAGGAACAGTCATGGCCGTGGATGAGAATGGTTCGTTGAATCGGACGGATGATAGTGTTGTAAAGCATGATTCCGGTGCCGTTGATCATCAGTCGAATCAGAACGGTGAGACACGGTCAACGATACCTAATGATCAGAATATTCAGATGATGATGTCTGTTAATCATCTACAACAGCAGCAACCCCAGAAAACGAGTGTGCAGCATAAGGCGCAAATGGGTGTTTTTCAACAGCAGAAGCAAAGCATCAAAGGCAATGGAGTGATGGGTCACCATAATTTTCAACATCAGCATCAGATAATGAACGGTGTTGATTTGAGTAGAAATGGAGGTGTGGGTGATGAGGTTCATGGTGGGGAAGGGTTTAACAGAGAGATGAAGGATTTGGAGGAAATGCTTTCCAAATTGAACCCCATGGCTGAAGAGTTTGTGCCTCCCTCACTCTCCACCAACTACGCAGTAGTGCCAATCTCTCCTGGTGGAGAACAATTTGGGTTTGATCCTTTCAGTTATGCAATGCAAACTGGACAAGGCGATGGAACTTTCAACAGAAGGAAGAGAAATGGCTATGGTCTTGGTAGGAGAAGGATGAATGTCCGGACAAGCATGGCCCAACGTGAAGAGGTTATTAGGAGGACAGTTTATGTGTCTGACATTGATCACCAGGTGACTGAAGAGCAACTTGCTACACTCTTTCTTACCTGCGGGCAGGTGGTTGACTGTCGTATCTGTGGAGATCCCAATTCTGTACTCCGTTTTGCATTTATTGAGTTTACTGATGAAGAAGGCGCAAGGAGTGCTCTGAGTCTTGCAGGAACTATGCTAGGATACTACCCTGTGAAAGTGCTTCCCTCTAAAACTGCTATTGCACCAGTTAATCCAACTTTTCTTCCAAGGTCTGAAGATGAAAGGGAGATGTGTGCAAGAACTATATACTGTACCAACATTGATAAAAAGGTTACTCAAGCAGATGTCAAGCTCTTTTTTGAGTACTTCTGTGGAGAGGTTAAGCGCTTGAGGTTGCTTGGTGACTATCATCATTCTACTCGCATAGGTTTTGTTGAGTTTGTTATGGCCGAGAGTGCCATTGCTGCACTGAACTGCAGTGGTGCAATCCTGGGATCACTCCCTATAAGTAAGCCCATCGAAGACTCCTGTCCGGCCGCGCACTCCCCGCTCGGTGGTGCAGTAATATATCACTTTATACCATCGTGTACCTCATGGCGTTTGTCTTTTGGTTTATTAGCGTTACTCAACTCGGCATCTCTCACCTTCTTGATACTCTTGTACTGTTGGCTGGTTTGTGAGTTTGCTTATGTTGATGTAATTTAAGTTTGGTATGGTATTGCTAGCTATTTATGTCTCTGTAGGCAATGCCTCGAGTACCAATACTGCTAACGGTGACTTCTGAGCAAGTTCCAACTTCAAACTTAAAAAGGAGTGTAATCTCTTCCTTTGTTCTATATGGCTGTTTATTATTCAGCCTATTTAATTTCTTACTTGTCTTGATGGTTGTAAATTGTAATTTGCCAGAAAACAAGTCTCAGAGCAGCC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g082400.2.1SL2.50ch03:52346760..52352044440+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g082400.2SL2.50ch03:52346358..523522665,909+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g082400.2.1.1SL2.50ch03:52346358..52346539182+n/a
exonexon:Solyc03g082400.2.1.10SL2.50ch03:52351659..5235172062+n/a
exonexon:Solyc03g082400.2.1.11SL2.50ch03:52351805..5235187167+n/a
exonexon:Solyc03g082400.2.1.12SL2.50ch03:52351916..52352266351+1
exonexon:Solyc03g082400.2.1.2SL2.50ch03:52346670..52347303634+n/a
exonexon:Solyc03g082400.2.1.3SL2.50ch03:52347737..52347847111+n/a
exonexon:Solyc03g082400.2.1.4SL2.50ch03:52347952..5234799645+n/a
exonexon:Solyc03g082400.2.1.5SL2.50ch03:52348113..5234818573+n/a
exonexon:Solyc03g082400.2.1.6SL2.50ch03:52348282..52348394113+n/a
exonexon:Solyc03g082400.2.1.7SL2.50ch03:52348500..5234855960+2
exonexon:Solyc03g082400.2.1.8SL2.50ch03:52348656..5234870348+n/a
exonexon:Solyc03g082400.2.1.9SL2.50ch03:52348792..5234886069+n/a
intronintron:Solyc03g082400.2.1.1SL2.50ch03:52346540..52346669n/a+n/a
intronintron:Solyc03g082400.2.1.10SL2.50ch03:52351721..52351804n/a+n/a
intronintron:Solyc03g082400.2.1.11SL2.50ch03:52351872..52351915n/a+n/a
intronintron:Solyc03g082400.2.1.2SL2.50ch03:52347304..52347736n/a+n/a
intronintron:Solyc03g082400.2.1.3SL2.50ch03:52347848..52347951n/a+n/a
intronintron:Solyc03g082400.2.1.4SL2.50ch03:52347997..52348112n/a+n/a
intronintron:Solyc03g082400.2.1.5SL2.50ch03:52348186..52348281n/a+n/a
intronintron:Solyc03g082400.2.1.6SL2.50ch03:52348395..52348499n/a+n/a
intronintron:Solyc03g082400.2.1.7SL2.50ch03:52348560..52348655n/a+n/a
intronintron:Solyc03g082400.2.1.8SL2.50ch03:52348704..52348791n/a+n/a
intronintron:Solyc03g082400.2.1.9SL2.50ch03:52348861..52351658n/a+n/a
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