Sol Genomics Network

Solanum lycopersicum gene Solyc03g083100.2

Name Solyc03g083100.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc03g083100	Length 2,916

Description

Calmodulin-binding protein family-like (AHRD V1 **-* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region

Location(s)

SL2.50ch03:52919754..52922669

GFF source

ITAG_eugene

From BOGAS: 1

Length: 2916

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc03g083100.2.1	SL2.50ch03:52919754..52922669	1,681	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc03g083100.2 SL2.50ch03:52922669..52919754 (sequence from reverse strand)
TACTCTTTTTGATCTGACCCCGTGAGAATGATAAATACTAACGGCAAAATAAGCAGGTTTGCACTTACTACTCTTTTTATTATCACCAAACTATTTTTTTTCTCCTTTCACTTTTTCTTTCACCTTATTTGGGGAAGTTCTGTATTTTCTTTTGTTGTCGTCTTGATGCTTATGATCTGTTGAATCTATGTGTGTTTTTTGTGACAGAAAGGTCAATTCTTTTGGCTGAAATATGGGCAAGAAAGGAAGTGGTTGGTTTTCATCTGTTAAGAAAGTTTTTAAACAGTCTCCTAAAGATTCACCTGATAAGAAGGTTAGTTCAATCTCATTCGAACACCTCGTATATATGTACTTCTTCGATTTTTCATATCTTAAATCTCTTTAGTGAAAATTCTGACTCTGTTACTCTCGCCTTATAATCTTCAAGATCAATACAGAGGAGAAAAAGAAGAAGAAAAACAGAATTTTGATATCACTAGTATATTTTAGAGCAAGATATTTTACGATCCAAATTATCATTAATTTGCTAATATTGGGTTCTTGTCTTATGTTGATCCATGATAATATTTTTTGGTTCCCTAAAAGAGGATTTATTTACTATTTATAAGACAAATGCTAATGATAGCAATATTATAGTTACACTAGCTTCTTTTGCTCTGTGTCATATTATGGTAATGATCCGTGAGAATTCATGGGGCGGACATTAATTTGTTTGGTGTTGAGACATAGTTATTACTGTTACGATAAATGCTATCTCTCATATCGCTTACAAACATCAGAAGTGCAATCTATAGACTTTTTTCTCATCAAGAAATAAATTGCATAGTTATTTACTCAATTTTTGATTACTACTGGTCCCCCCTTACACCAAATGAGTTCATGACCTTTAGCTTTCACTCCACCTATATCTTCCCCACCTATATTCATAATTACATGTGCTGCTTACGTTACTTCTCTATCATGACTCACTACCATCACTCTGAATGTTACACTCTCTTGTCAAAAGAAAGTAAATCATATCTCGTGTCTTTAATATTTAATTAAACGATGATTAATGGCACGATGATTGAGGTGGTTTAATTGTTGTGTGTCATTTTTTTTCAGAAGGAAACATTAGACAGTAAATGGCAGCAACCTGAACCTCCTGAAGTGGTGTCACTTGAACATTTTCCAGTAGGGAGTTCTCCAGATTTTATAAGTAATGGAGGGAGTAACGTTGATTCATCGTCTACTGTGGCTGAGGATCATAACCATGCCATTGCTGTTGCAGCTGCCACGGCTGCAGCCGCTGAGGCAGCTGTTGCAGCTGCTCACGCGGCTGCTAAAGTCGTCAGATTAGCTGGTGGCTATGGCCGCGTGCAGTCAACAGAGGAAAGGGCTGCCACGCTTATTCAGTCATACTACAGGGGATATCTGGTAAAATAATGTCCTAGACAAATTTTTGTTTTATGTAATCTGTTAGTAATGTTACTCAATTTTATCTTGATAATCTTTAATTTTACTGATTTTGTAGGCAAGACGTGCTTTGCGTGCTCTGAAAGGATTGGTGAGGCTGCAAGCACTAGTGAGAGGACATAATGTGCGAAAACAAGCACAAATGACCATGAGATGTATGCAAGCATTGGTACGTGTACAAGGCAGAGTACGAGCAAGGAGGCTCCAGTTAGTCCAGGAAAGGCTCGAGAGCAAGCTAGAAGAGGCACGAAGACACGCTGCTGAAGAACAACAACACAAACACACCAGCCCCATTAAGAAGTCAGGGACAGAATGTTGGGATAACAGGAACCAAAGCATGGATAAGATCCAAGAAAGCAGTAGGAGAAAATTCGATGCAGAAATGAAAAGGGAAAGAGCTCTTGCTTATGCCTATGCCTATCAGGTTAGCTATTCCCTTATCTACCCAACGTATGGTCGCTCAACTAATAGGCATTATCTCAAAAAGTCACTTTTTTGAAATTACTACACGTTGAGTGACGACCATTTTGAGAAAACAACTCCTTACTAAAAATGAATTATAAAATTCTGTTAATTGATAAGTTCTAATGTTGTGGTACTATTGTGATTGGTGTTGACAGCAAAAGCAACAACAACTATTGCACATTGATCCACATGGTGAGGACGCTGAATATTTTGGAAATGAGCGCGAAAAGTCACAATGGGGATGGAGTTGGCTGGAGCGATGGATGGCTTCGCAACCATACCAATACTCAAGACACATTGTGCCAAGAGACAGCTCCTATGTGACACCTTCCACAACAAGTGACATGTCTGAAAAGACAGTTGAAATGGACCTAATCACCGGGCCATTGGACTCGGAGACCATCAACTCAGCCCATCACACTTTTGATCAAGCTGAAACAAGCCCATACTCAGCCCGGAAGGTTGTTCACTCAAAATTTGATAATGTCCCTAGTTACATGACCCCAACTAAGTCTACAAAAGCGAAGGTGAGGAATCAAGGCCTTGTTAAGCATCGCAGCCCACCATCGGCTCAATGGAATGTATCGAAAAGGAAGGGGCCACACTATGGTTTGGGGCTTGAATCAAGTTCAGGGGCAAGTACAACAGCAATCTATCAAGCCTCAAGAAGCCCAAGCCCAAAAACTACCGCGAATCGCAGTAGTGGACATGCTAATAAATGGATGGCAACTTACAGCCCGGAATCAAGTGGAGATGATCGAGCTTCACCATTAGGAGCACATCCATGGAGATATAATTTTAGTTGATATATATATATATATATATATATATTTTGGTGGTTAATAAAGTACTGATCAATAATGCTGTTGCTGCGTGCTAATAGCTTATTGTTTTTGTTTTTGTATCCTATTTTGAATTTAATTTGGATGGTTAAATATATATATGAAGTTTGAGTTTTTGCAATGAATGTAATATATGATAAATGTAATCTTGTTT

Download sequence region

Download sequence (2.9Kb)

Get flanking sequences on SL2.50ch03

mRNA Solyc03g083100.2.1

Ontology terms

terms associated with this mRNA

GO:0005516 – calmodulin binding

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc03g083100.2.1	SL2.50ch03:52919943..52922437	470	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc03g083100.2	SL2.50ch03:52919754..52922669	2,916	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc03g083100.2.1.1	SL2.50ch03:52922614..52922669	56	-	n/a
exon	exon:Solyc03g083100.2.1.2	SL2.50ch03:52922357..52922462	106	-	n/a
exon	exon:Solyc03g083100.2.1.3	SL2.50ch03:52921254..52921565	312	-	n/a
exon	exon:Solyc03g083100.2.1.4	SL2.50ch03:52920791..52921156	366	-	n/a
exon	exon:Solyc03g083100.2.1.5	SL2.50ch03:52919754..52920594	841	-	n/a
intron	intron:Solyc03g083100.2.1.2	SL2.50ch03:52922463..52922613	n/a	-	n/a
intron	intron:Solyc03g083100.2.1.3	SL2.50ch03:52921566..52922356	n/a	-	n/a
intron	intron:Solyc03g083100.2.1.4	SL2.50ch03:52921157..52921253	n/a	-	n/a
intron	intron:Solyc03g083100.2.1.5	SL2.50ch03:52920595..52920790	n/a	-	n/a

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Related views

Genetic loci

Tomato locus SlSUN10 (SUN-like protein 10)

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17762565%2Fdetails feature 17762565

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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