Sol Genomics Network

Solanum lycopersicum gene Solyc03g096870.2

Name Solyc03g096870.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc03g096870	Length 2,590

Description

WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region

Location(s)

SL2.50ch03:59239281..59241870

GFF source

ITAG_eugene

From BOGAS: 1

Length: 2590

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc03g096870.2.1	SL2.50ch03:59239281..59241870	1,827	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc03g096870.2 SL2.50ch03:59241870..59239281 (sequence from reverse strand)
TATCTATCTATCTCTTTCTCTCTCTAAGTTTCTCAAGCGAACAAGCAAGCGATTTCGTCTCGTGATTTATATTTTTTGTGTGCAATTATAACTGTTTCATTTGAATTTGTTTGTCTATAATCTGATTTTGGTTTTGCAGGGTTTGTTAATCAAGGTGTTTGATTCTTTTTCATTTGTTATCTTTGTTCTTGTCGATATTTGTTTTTTTCTTTTTGTGCTAATTAATGGATGCAGGATCACACTCTGCCTCATCAAATAAGAAACAGTCTCGTTGCCCTCTTCAGGAACAACTTCTTCAACGAAAAAATTCTCGTGATAATGTATGCATTCTAGACTCTGAATCATTTTCTCTATTAGTCATTATATGTGTTTGATTAGATGAGGATTGGGGGCGGGGAGGGGATTACAATGTGGGGAATTGAATTCTCACTAATAAAGTGAAAGTTCAGGTAGCTAATCCCAAGTAAGCGACCAAGATTGCCTCGTAAATCAAGAATTAATCTTTTTCAATAAAGGGGATTTTTAATTAAAATGAGGAGATGGGGTTTCAATGATTTGCCAATTTTGCTTTTGATCTGATTGAGCATCACTATATGCCAGTTTTGGCCTGATTGGTTCTATTTAGATTGATTGGTTGGGCCCTTGATCTGTTATTTGCCTTGTGTCAAATTATGTGGGTAGGGGGGTGGAATGGTGGTTGAAACATGAACACGGTGGGGGCTGGGGTTTTCGATTGTCAGAAGCTGTTTTCCAGGTTTCTTTGGGGATAGAAACATGAATATCTCACCAACTGTTGATTTATTGTCTTTTAACAGTTGGATAGGTTTATTCCAAATCGATCAGCGATGGATTTCGACTATGCACATTACATGCTGACAGAGGGACGGAAAGGTAAGGAAAACCCAGCTGTTAGCTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCAGAAACTTTCAACATGAACAGGTCTCGCATTCTGGCATTCAAGAACAAACCACCAACTCCTGTTGAGGCCATTCCTAATGAGATTGCCTCTGTTCAACAGAACAAAACGGCAAAGCCCCGTCGATACATTCCTCAGGTAGTTTCATTTTCCTAGACCGTGTTGCGAAGAAGAGCAATCTGCACCAAAGATAACTTTTTTGGATGAAAAGTTTTTAAAGGTTCAATTTGTGTTATATGCAGACCTCTGAGAGGACATTAGATGCACCAGATATCATGGATGATTACTATTTGAATTTGTTAGACTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTTGGCGGCACTGTGTATCTGTGGGATGCATCTGATGGTGCTACTTCAGAGCTAGTCACTGTTGATGAAGAAAATGGCCCCGTTACAAGTGTTAAATGGGCTCCTGATGGTCGACATATTGCTGTTGGTCTTAACAATTCTGAGGTTCAGCTTTGGGATTCTACAGCAAATCGACTGGTACGTTTCCTGAATTCTTCTGGTTTCATAGTTCAAAACCAAATATTCATATGCTAACATGTTTACATTCTTTGGTGCAGTTGAGAACTTTGAAAGGCGGTCACCGATCCCGAGTTGGTGCTCTAGATTGGAACAATCACATTTTGACAACTGGGGGAATGGATGGTCAAATCATTAACAATGATGTGAGAATAAGAAATCCCATTGTTGACACTTACCAAGGACATCATCAAGAAGTCTGTGGTCTAAAATGGTCAGCCTCTGGCCAGCAATTAGCTAGTGGTGGAAATGACAACCTCCTCCACATATGGGACAGATCAACAGCTTCTTCCAACTCTACAACACAGTGGCTTCACCGGCTGGAAGATCACACAGCTGCTGTTAAAGCCCTTGCTTGGTGTCCTTTCCAGGGTAACTTATTGGCCTCTGGTGGTGGTGGAAGTGACAGGTGCATAAAATTCTGGAATACCCATACTGGCGCTTGCTTGAACTCAATTGATACAGGATCTCAGGTTTGTTCCCTGCTGTGGAACAAGAATGAGCGTGAGCTGCTAAGTTCTCATGGTTTCACTCAGAATCAGCTCACCCTTTGGAAATACCCTTCTATGGTTAAGGTAGCTGAGCTAACTGGCCACACATCTAGAGTACTTTTCATGGCTCAGGTAAATTTTCATCGTTGGTGTATCTTTTGCATCATTGTTGGGTTTATACAAAGGTATTCATTTTCTTGTTTATCGGTTTTGCAGAGTCCAGATGGTTGCACAGTTGCATCTGCAGCTGGAGATGAAACCCTCAGATTCTGGAATGTATTTGGTACTCCTGAAGCAGCAAAACCTGCACCAAAGGCAAATCCTGAACCATTCGCTCACCTGAACCGTGGTATCCGCTGAATGACAATGGAAAATTGCATGCTGAAGATTTCTGTACAGTCTTGTTAAATACATACACACATACATACCGGAACAAAAGACTGCATATAAACTGGAACAAAGGACTATTTTTTGATTCTATTACAGTGACTGCACACACCAATAGTGACAATAGGCCTGTCCAGGAATATTCCCTTGTACAGTTTCCTGATGTTGATGTATTTCTCAATACAATACAACATAATTTATTTTGAAGCCATCT

Download sequence region

Download sequence (2.6Kb)

Get flanking sequences on SL2.50ch03

mRNA Solyc03g096870.2.1

Ontology terms

terms associated with this mRNA

GO:0004872 – receptor activity
GO:0008022 – protein C-terminus binding

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc03g096870.2.1 WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region
TATCTATCTATCTCTTTCTCTCTCTAAGTTTCTCAAGCGAACAAGCAAGCGATTTCGTCTCGTGATTTATATTTTTTGTGTGCAATTATAACTGTTTCATTTGAATTTGTTTGTCTATAATCTGATTTTGGTTTTGCAGGGTTTGTTAATCAAGGTGTTTGATTCTTTTTCATTTGTTATCTTTGTTCTTGTCGATATTTGTTTTTTTCTTTTTGTGCTAATTAATGGATGCAGGATCACACTCTGCCTCATCAAATAAGAAACAGTCTCGTTGCCCTCTTCAGGAACAACTTCTTCAACGAAAAAATTCTCGTGATAATTTGGATAGGTTTATTCCAAATCGATCAGCGATGGATTTCGACTATGCACATTACATGCTGACAGAGGGACGGAAAGGTAAGGAAAACCCAGCTGTTAGCTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCAGAAACTTTCAACATGAACAGGTCTCGCATTCTGGCATTCAAGAACAAACCACCAACTCCTGTTGAGGCCATTCCTAATGAGATTGCCTCTGTTCAACAGAACAAAACGGCAAAGCCCCGTCGATACATTCCTCAGACCTCTGAGAGGACATTAGATGCACCAGATATCATGGATGATTACTATTTGAATTTGTTAGACTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTTGGCGGCACTGTGTATCTGTGGGATGCATCTGATGGTGCTACTTCAGAGCTAGTCACTGTTGATGAAGAAAATGGCCCCGTTACAAGTGTTAAATGGGCTCCTGATGGTCGACATATTGCTGTTGGTCTTAACAATTCTGAGGTTCAGCTTTGGGATTCTACAGCAAATCGACTGTTGAGAACTTTGAAAGGCGGTCACCGATCCCGAGTTGGTGCTCTAGATTGGAACAATCACATTTTGACAACTGGGGGAATGGATGGTCAAATCATTAACAATGATGTGAGAATAAGAAATCCCATTGTTGACACTTACCAAGGACATCATCAAGAAGTCTGTGGTCTAAAATGGTCAGCCTCTGGCCAGCAATTAGCTAGTGGTGGAAATGACAACCTCCTCCACATATGGGACAGATCAACAGCTTCTTCCAACTCTACAACACAGTGGCTTCACCGGCTGGAAGATCACACAGCTGCTGTTAAAGCCCTTGCTTGGTGTCCTTTCCAGGGTAACTTATTGGCCTCTGGTGGTGGTGGAAGTGACAGGTGCATAAAATTCTGGAATACCCATACTGGCGCTTGCTTGAACTCAATTGATACAGGATCTCAGGTTTGTTCCCTGCTGTGGAACAAGAATGAGCGTGAGCTGCTAAGTTCTCATGGTTTCACTCAGAATCAGCTCACCCTTTGGAAATACCCTTCTATGGTTAAGGTAGCTGAGCTAACTGGCCACACATCTAGAGTACTTTTCATGGCTCAGAGTCCAGATGGTTGCACAGTTGCATCTGCAGCTGGAGATGAAACCCTCAGATTCTGGAATGTATTTGGTACTCCTGAAGCAGCAAAACCTGCACCAAAGGCAAATCCTGAACCATTCGCTCACCTGAACCGTGGTATCCGCTGAATGACAATGGAAAATTGCATGCTGAAGATTTCTGTACAGTCTTGTTAAATACATACACACATACATACCGGAACAAAAGACTGCATATAAACTGGAACAAAGGACTATTTTTTGATTCTATTACAGTGACTGCACACACCAATAGTGACAATAGGCCTGTCCAGGAATATTCCCTTGTACAGTTTCCTGATGTTGATGTATTTCTCAATACAATACAACATAATTTATTTTGAAGCCATCT

Download sequence (1.8Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc03g096870.2.1	SL2.50ch03:59239521..59241646	454	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc03g096870.2	SL2.50ch03:59239281..59241870	2,590	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc03g096870.2.1.1	SL2.50ch03:59241551..59241870	320	-	n/a
exon	exon:Solyc03g096870.2.1.2	SL2.50ch03:59240786..59241055	270	-	n/a
exon	exon:Solyc03g096870.2.1.3	SL2.50ch03:59240412..59240681	270	-	n/a
exon	exon:Solyc03g096870.2.1.4	SL2.50ch03:59239750..59240331	582	-	n/a
exon	exon:Solyc03g096870.2.1.5	SL2.50ch03:59239281..59239665	385	-	n/a
intron	intron:Solyc03g096870.2.1.2	SL2.50ch03:59241056..59241550	n/a	-	n/a
intron	intron:Solyc03g096870.2.1.3	SL2.50ch03:59240682..59240785	n/a	-	n/a
intron	intron:Solyc03g096870.2.1.4	SL2.50ch03:59240332..59240411	n/a	-	n/a
intron	intron:Solyc03g096870.2.1.5	SL2.50ch03:59239666..59239749	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc03g096870

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17766104%2Fdetails feature 17766104

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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