Solanum lycopersicum mRNA Solyc03g114370.2.1
 mRNA details
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| Name | Type |
Length
2,040
|
Organism |
|
Description
Atp-dependent RNA helicase (AHRD V1 **** B8BY61_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
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Location(s)
SL2.50ch03:64372152..64379297
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0008026
- GO:0005524
- Length
- 7146
- Nb exon
- 13
- Sifter term
- GO:0004004
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc03g114370.2.1 Atp-dependent RNA helicase (AHRD V1 **** B8BY61_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
TGCCAAAACCCTCCTCCGCTAAATCATTTTCTTCTTCTTCTCCGGCAAACTCTCAGTTTCTCTTTCTCCGACGATATCAACTTGCACCCCCCGCCGCTGAGTTATAAATTCTCAACCATGGCGGAGGTTGAAGAAAACCCTAATATAGTTATTGCGGAAGAAGAGTCAATTAAGAAGAAGAGAAAGCGAAAGAGAGACAAGAAGAACAAAATGGTTACGGAAAAGGAGACCAAGGAGGAGGAAGAGAAAGAGGAAGGGGAAGAGGATGATGAAGAAAGACAGGAATTGGGTGATGAACTGAAGGAGGAGATTAAGAAAGAGATGAAGAGTGGGTCAGGTATTATGAGTTCAGAGTTGTTTTCTTCTGTTCAAATTTCTGAGCTCACCAGGAAAGCTATTGAGGATATGGGATTTGAGTACATGACTCAGATCCAAGCTAGGGCAATTCCTCCTCTTGTGGAAGGCAAGGATGTCCTCGGAGCTGCAAGAACTGGTTCTGGTAAAACTCTAGCATTTTTGGTTCCAGCTGTGGAGTTATTATTTAATGTCCACTTTACACCACGTAATGGAACTGGGGTGGTTGTTATTTGCCCAACAAGAGAACTGGCTATACAGACACATGCTGTGGCAAAGGACCTTCTCAAGTATCACTCGCAGACTCTTGGGTTGGTTATCGGTGGTTCAGCAAGAAGAGCAGAGGCAGAGCGTATTGCTAAAGGGGCTAATCTCTTAGTAGGCACCCCTGGTCGACTACTTGATCATCTTAGAAATACCAAGGGTTTCAATTATAAGAACCTTCAGTGTCTCGTGATTGATGAAGCTGATAGGATTTTGGAAGCAAACTTTGAGGAAGATATGCAACAAATACTTAAACTTCTACCAAAGGAGGGGAGGCAGACTGCTCTCTTTTCGGCCACACAGACAAAAAAGGTTGAGGACCTTGCACGCTTATCTTTGACAGCTCCTATCTATATTGATGTGGACGATGGGAGAAGGAGGGTCACAAATGAAGGGCTACAACAAGGATACTGTGTTGTCCCAAGTGCCAGGAGATTTATTCTCCTTTATTCATTCTTGAAGAGGAACCTGTCAAAGAAAATAATGGTTTTCTTCTCATCTTGCAACTCTGTCAAGTTCCATTCCGAACTTCTTCGCTATATCAAGATTGAGTGCCACGATATTCATGGGAAGCAAAAGCAGCAAAAACGAACGTCTACCTTTTTTGATTTCTGCGAAGCAAAGAAGGGCATCCTGTTATGCACAGATGTCGCTGCACGTGGTCTGGATATTCCTGCTGTGGACTGGATTGTGCAGTTTGACCCCCCCGATGAACCCAAGGAATACATACACAGAGTTGGTCGAACAGCACGTGGTGAAGGTGCTAAAGGAAACGCTTTGCTATTCTTGATTCCAGAGGAGTTGCAGTTTCTCAAGTACCTGAAGGCGGCAAAAGTACCTGTAAAAGAATACGAATTTGATCATAAGAAGCTGGCCAATGTGCAGTCACTCCTGGAAAAATTGGTTGCAAACAACTATTACTTGAACCAGTCGGCTAAAGAGGCATATAGGTCTTATTTACTATCATATAATTCTCATTCCATGAAGGAAATATTCAATGTTCACAGACTTGATCTGCAGGCTGTAGCTTCTTCGTTCTGTTTTTCTAATCCTCCAAAAGTACACCTCAACATAGATAGCAACGCTTCCAAGTTCAGGCAGAAAAAGCGTAAAGTTGAAGGAAGCCGAAATGGGTTCAGCGAAGGCAATCCTTATGGGAAGAAAAGAGCTGACGATACGAGGCAGTTTGTAAGATATTAGGGATGGTTTTTGCAGCAGGAGCACCAGATTCATGCCTCGAATGTATAATTTTTCTCTAATGTAACTTATTACGTGGAAGAAGAGTTCATCATAGTTGAAGCATTTCGCACTTCGAATTTTCTGGATTTTGTCCCCCCCCACAATTTTGTATTGGCATTTGCCAAAAAGGAATTAGAGACTCGTGAATTGTTTATTTTTTCACTTATGATATGAACAATTTTG
TGCCAAAACCCTCCTCCGCTAAATCATTTTCTTCTTCTTCTCCGGCAAACTCTCAGTTTCTCTTTCTCCGACGATATCAACTTGCACCCCCCGCCGCTGAGTTATAAATTCTCAACCATGGCGGAGGTTGAAGAAAACCCTAATATAGTTATTGCGGAAGAAGAGTCAATTAAGAAGAAGAGAAAGCGAAAGAGAGACAAGAAGAACAAAATGGTTACGGAAAAGGAGACCAAGGAGGAGGAAGAGAAAGAGGAAGGGGAAGAGGATGATGAAGAAAGACAGGAATTGGGTGATGAACTGAAGGAGGAGATTAAGAAAGAGATGAAGAGTGGGTCAGGTATTATGAGTTCAGAGTTGTTTTCTTCTGTTCAAATTTCTGAGCTCACCAGGAAAGCTATTGAGGATATGGGATTTGAGTACATGACTCAGATCCAAGCTAGGGCAATTCCTCCTCTTGTGGAAGGCAAGGATGTCCTCGGAGCTGCAAGAACTGGTTCTGGTAAAACTCTAGCATTTTTGGTTCCAGCTGTGGAGTTATTATTTAATGTCCACTTTACACCACGTAATGGAACTGGGGTGGTTGTTATTTGCCCAACAAGAGAACTGGCTATACAGACACATGCTGTGGCAAAGGACCTTCTCAAGTATCACTCGCAGACTCTTGGGTTGGTTATCGGTGGTTCAGCAAGAAGAGCAGAGGCAGAGCGTATTGCTAAAGGGGCTAATCTCTTAGTAGGCACCCCTGGTCGACTACTTGATCATCTTAGAAATACCAAGGGTTTCAATTATAAGAACCTTCAGTGTCTCGTGATTGATGAAGCTGATAGGATTTTGGAAGCAAACTTTGAGGAAGATATGCAACAAATACTTAAACTTCTACCAAAGGAGGGGAGGCAGACTGCTCTCTTTTCGGCCACACAGACAAAAAAGGTTGAGGACCTTGCACGCTTATCTTTGACAGCTCCTATCTATATTGATGTGGACGATGGGAGAAGGAGGGTCACAAATGAAGGGCTACAACAAGGATACTGTGTTGTCCCAAGTGCCAGGAGATTTATTCTCCTTTATTCATTCTTGAAGAGGAACCTGTCAAAGAAAATAATGGTTTTCTTCTCATCTTGCAACTCTGTCAAGTTCCATTCCGAACTTCTTCGCTATATCAAGATTGAGTGCCACGATATTCATGGGAAGCAAAAGCAGCAAAAACGAACGTCTACCTTTTTTGATTTCTGCGAAGCAAAGAAGGGCATCCTGTTATGCACAGATGTCGCTGCACGTGGTCTGGATATTCCTGCTGTGGACTGGATTGTGCAGTTTGACCCCCCCGATGAACCCAAGGAATACATACACAGAGTTGGTCGAACAGCACGTGGTGAAGGTGCTAAAGGAAACGCTTTGCTATTCTTGATTCCAGAGGAGTTGCAGTTTCTCAAGTACCTGAAGGCGGCAAAAGTACCTGTAAAAGAATACGAATTTGATCATAAGAAGCTGGCCAATGTGCAGTCACTCCTGGAAAAATTGGTTGCAAACAACTATTACTTGAACCAGTCGGCTAAAGAGGCATATAGGTCTTATTTACTATCATATAATTCTCATTCCATGAAGGAAATATTCAATGTTCACAGACTTGATCTGCAGGCTGTAGCTTCTTCGTTCTGTTTTTCTAATCCTCCAAAAGTACACCTCAACATAGATAGCAACGCTTCCAAGTTCAGGCAGAAAAAGCGTAAAGTTGAAGGAAGCCGAAATGGGTTCAGCGAAGGCAATCCTTATGGGAAGAAAAGAGCTGACGATACGAGGCAGTTTGTAAGATATTAGGGATGGTTTTTGCAGCAGGAGCACCAGATTCATGCCTCGAATGTATAATTTTTCTCTAATGTAACTTATTACGTGGAAGAAGAGTTCATCATAGTTGAAGCATTTCGCACTTCGAATTTTCTGGATTTTGTCCCCCCCCACAATTTTGTATTGGCATTTGCCAAAAAGGAATTAGAGACTCGTGAATTGTTTATTTTTTCACTTATGATATGAACAATTTTG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc03g114370.2.1 | SL2.50ch03:64372373..64378915 | 567 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc03g114370.2 | SL2.50ch03:64372152..64379297 | 7,146 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc03g114370.2.1.1 | SL2.50ch03:64379216..64379297 | 82 | - | n/a |
| exon | exon:Solyc03g114370.2.1.10 | SL2.50ch03:64373744..64373848 | 105 | - | n/a |
| exon | exon:Solyc03g114370.2.1.11 | SL2.50ch03:64373306..64373374 | 69 | - | n/a |
| exon | exon:Solyc03g114370.2.1.12 | SL2.50ch03:64373070..64373195 | 126 | - | n/a |
| exon | exon:Solyc03g114370.2.1.13 | SL2.50ch03:64372152..64372553 | 402 | - | n/a |
| exon | exon:Solyc03g114370.2.1.2 | SL2.50ch03:64378604..64378950 | 347 | - | n/a |
| exon | exon:Solyc03g114370.2.1.3 | SL2.50ch03:64378101..64378286 | 186 | - | n/a |
| exon | exon:Solyc03g114370.2.1.4 | SL2.50ch03:64376051..64376236 | 186 | - | n/a |
| exon | exon:Solyc03g114370.2.1.5 | SL2.50ch03:64375778..64375864 | 87 | - | n/a |
| exon | exon:Solyc03g114370.2.1.6 | SL2.50ch03:64375041..64375082 | 42 | - | n/a |
| exon | exon:Solyc03g114370.2.1.7 | SL2.50ch03:64374649..64374717 | 69 | - | n/a |
| exon | exon:Solyc03g114370.2.1.8 | SL2.50ch03:64374263..64374562 | 300 | - | n/a |
| exon | exon:Solyc03g114370.2.1.9 | SL2.50ch03:64373946..64373984 | 39 | - | n/a |
| intron | intron:Solyc03g114370.2.1.10 | SL2.50ch03:64373849..64373945 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.11 | SL2.50ch03:64373375..64373743 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.12 | SL2.50ch03:64373196..64373305 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.13 | SL2.50ch03:64372554..64373069 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.2 | SL2.50ch03:64378951..64379215 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.3 | SL2.50ch03:64378287..64378603 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.4 | SL2.50ch03:64376237..64378100 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.5 | SL2.50ch03:64375865..64376050 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.6 | SL2.50ch03:64375083..64375777 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.7 | SL2.50ch03:64374718..64375040 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.8 | SL2.50ch03:64374563..64374648 | n/a | - | n/a |
| intron | intron:Solyc03g114370.2.1.9 | SL2.50ch03:64373985..64374262 | n/a | - | n/a |
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