Solanum lycopersicum mRNA Solyc03g114720.2.1

mRNA details  
Name
Solyc03g114720.2.1
Type
mRNA
Length
2,214
Organism
Solanum lycopersicum
Description
Transcription factor BIM2 (AHRD V1 *-** B6SVP6_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location(s)
SL2.50ch03:64625014..64631112
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0045449
Length
6099
Nb exon
11
Sifter term
  • GO:0005515
  • GO:0003700
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g114720.2.1 Transcription factor BIM2 (AHRD V1 *-** B6SVP6_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding

AACAATTGGAGGAAGTGAATTGCCATTAGAGGCGAATAATTTGAAGTTAGTTTTACAGAAGATTTGCCAGTTGTTAATGCGCCTCCAATTTTCGTTGGAGGCGGATCTGCACTTTAAAGAGATTTGGATACAGAATTTTCCAGATTTACGCAACGACTTAATCAGCGAAATTCGGTTGAATTGTGTGTAATTACTTGATCTGGCGAATACACAATTCAAGTGTGTGGATGGAGCTGCCTCAGCCCAGACCTTTTGGAACAGAAGGGAGGAAGACGACTCATGACTTTCTTTCACTGTATTCACCTGTTCAACAAGATCCAAGACCTCCCCAAGGTGGCTACCTGAAGACTCATGACTTCTTGCAACCACTGGAGCAAGCAGAGAAGACATTAAGGGAAGAAGAAACCAATGTTGAAGTAGCAACTGTGGAGAAGCCTCCGCCACCAGTAGCTGCTACTCCTTCAGGGGAGCATATTCTTCCTGGTGGCATAGGCACCTTCAGTATTTCTTATTTGCACCAAAGGATACCAAAACCAGAGGCAAGCTTGTTCTCTGTAGCACAAGCAAGTAGTACCGACAGAAATGATGAAAATTCAAACTGTAGTTCTTTCACAGGGAGTGGTTTCACACTGTGGGATGAATCTGCAGTCAAGAAGGGAAAGACAGGGAAGGAGAATTCTGGGGGTGATCGACACGTCCTAAGAGAAGGAGGTGTGAACACTGGAGGTGTTCAGCCAACGACATCATTAGAGTGGCAGTCACAATCATCTTCAAATCATAAGCACAACACTACGGCCTTAAGTTCGCTCTCATCTGCTCATCAATCATCGCCCCTTAAGAGCCAAAGTTTCTTGCATATGATAACATCAGCAAAGAGTGCACAAGATGACGATGATGATGATGAAGATTTTGTGATTAAGAAAGAACCACAGTCGCACCTTAGAGGTAGTTTATCTGTAAAGGTTGATGGAAAAGGCAACGATCAAAAGCCAAGCACCCCACGTTCAAAACATTCAGCAACAGAGCAACGGAGAAGAAGCAAGATCAATGACAGATTTCAGATGTTGAGGGGAATCATCCCTAATAGTGATCAGAAAAGAGATAAAGCGTCTTTCTTACTGGAGGTTATTGAATATATTCATTTTCTACAAGAGAAAGTGCACAAGTATGAGGAATCATACCAAGGCTGGGACAATGAACCTCCGAAGTTGCCATTGAGCAAGTGCCATAGGACGACTCATGGCGTTAGCAATCTTCCTCAACGCATTATCAATGCATCCAGTGCTTCACTGACGTATGCTGGAAAGTTTGATGAGAGCATAATGGGGATTTCTTCTGCTAATCCTATCAATGTGCAAAAACTGGAACCAAACATAAGCAGCACAGGTTTAAAAGATAAAGGTCAGCAGCCTGGTTTAACAAATAAGCCGACAACAGTTCCTATGCACCCAAACACGTTTTCATTTTCTGGGACTAGTAGCACGGCAGCGCTTTATTCATCAAAGCTGATAGCTGATACTGATAAGTTGGAGTCAAAGTCTCATTCTCAATTTTCACTTAGCAGATCGCATATGACTGATTATGCTATTCCAAATGCTAATCCAGAAAGGCTGGAGCTGCCTATAGAAAGTGGTACCATCAGCATCTCTAGTGCCTATTCTCAAGGGCTATTGAACACCTTGACACAAGCGCTGCATAGTTCTGGAGTAGATTTGACCCAAGCCAATATCTCTGTGCAAATTGATCTTGGAAAGAGAGCAAATGGGAGAGTAAATTCATCAGCTTCCACTGTTAAGGGTGACAACGTTTCAACAAGCAATCAACCAATTCCAAAATCTAGAGTTACAACCACAAGGGAGGAGCCTGATCACGCCTTCAAAAGGCGGAAAACAAGCTAATGCTAATTTGAAACACTAGTGTTCTTTCTTCTTTTTTTTCCATTGGTTAAATTTAATTGTTTTCCTCTTTCCCTTCCCCTTCTCAACCAATATCGATGTCCACACCTGATACAGAAAATCTCCCAAATGAGAGATCACAAGCCACTGTATATGTAATGAACTAGTACTACTACTATTTTTCTGCCCCTTCAAATTGTTGGGCTGCACAAATTTACCTGACTAGAGTGTGATATTTTATTACTTGGTAGTAAACTACTGTATTAATTTATTACTAAGGCTTTCAATGATGATGATGAGACAGCTGCATTGTCAAGTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g114720.2.1SL2.50ch03:64625240..64630796557+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g114720.2SL2.50ch03:64625014..646311126,099+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g114720.2.1.1SL2.50ch03:64625014..64625277264+n/a
exonexon:Solyc03g114720.2.1.10SL2.50ch03:64630446..64630575130+n/a
exonexon:Solyc03g114720.2.1.11SL2.50ch03:64630695..64631112418+1
exonexon:Solyc03g114720.2.1.2SL2.50ch03:64625386..6462545469+n/a
exonexon:Solyc03g114720.2.1.3SL2.50ch03:64627173..64627544372+2
exonexon:Solyc03g114720.2.1.4SL2.50ch03:64628036..64628150115+2
exonexon:Solyc03g114720.2.1.5SL2.50ch03:64628248..64628372125+2
exonexon:Solyc03g114720.2.1.6SL2.50ch03:64628456..64628564109+1
exonexon:Solyc03g114720.2.1.7SL2.50ch03:64628903..6462897270+2
exonexon:Solyc03g114720.2.1.8SL2.50ch03:64629054..6462914693+1
exonexon:Solyc03g114720.2.1.9SL2.50ch03:64629584..64630032449+n/a
intronintron:Solyc03g114720.2.1.1SL2.50ch03:64625278..64625385n/a+n/a
intronintron:Solyc03g114720.2.1.10SL2.50ch03:64630576..64630694n/a+n/a
intronintron:Solyc03g114720.2.1.2SL2.50ch03:64625455..64627172n/a+n/a
intronintron:Solyc03g114720.2.1.3SL2.50ch03:64627545..64628035n/a+n/a
intronintron:Solyc03g114720.2.1.4SL2.50ch03:64628151..64628247n/a+n/a
intronintron:Solyc03g114720.2.1.5SL2.50ch03:64628373..64628455n/a+n/a
intronintron:Solyc03g114720.2.1.6SL2.50ch03:64628565..64628902n/a+n/a
intronintron:Solyc03g114720.2.1.7SL2.50ch03:64628973..64629053n/a+n/a
intronintron:Solyc03g114720.2.1.8SL2.50ch03:64629147..64629583n/a+n/a
intronintron:Solyc03g114720.2.1.9SL2.50ch03:64630033..64630445n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17772855%2Fdetails feature 17772855
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