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Solanum lycopersicum mRNA Solyc03g117980.2.1

mRNA details  
Name
Solyc03g117980.2.1
Type
mRNA
Length
3,553
Organism
Solanum lycopersicum
Description
Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding
Location(s)
SL2.50ch03:66972887..66978652
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0016020
  • GO:0016021
  • GO:0005509
  • GO:0055114
Length
5766
Nb exon
12
Sifter term
GO:0016174
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g117980.2.1 Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding

TGTAGAAGAGAATTAAGGCATTACCACCACTTCTGAGTTCTGCTTGGAAGAAGAAATCCTAAATCTTTTATTTGTTTATTGAATTTTGAGTCTATGATTTGAAAATCCAAATTAGATTACTTTTGTTATCTTTTTTCCATATATACATCTTCGTCTACCTAACTTACCTTCATTTTGAAAAAAAAAAAATTCAAATTCCATTCATTCATTTCATTTTTCCACGAAGAAACTATTGTAGCGATGCAAAATTCGGAAAATCATCACCCACACCATCACCATCATCACTCGGATACGGAGGTTATAGGGAATGATAGAGCGTCGTACAGTGGTCCTTTAAGCGGACCGCTGAACAAACGAGGAGGAAAAAAGAGCGCGAGGTTTAATATACCGGAATCTACTGACATCGGAACTAGTGCAGGAGCCGGCGCCAAGTCCAATGACGATGCTTATGTGGAAATCACTCTCGATGTTCGTGAAGACTCTGTGGCTGTCCACAGTGTGAAAACTGCCGGCGGTGCTGACGTGGAAGATCCGGAGTTGGCTTTATTGGCTAAAGGTTTGGAGAAGAAATCTACCTTGGGAGCTTCACTTGTACGAAATGCTTCTTCGAGAATCCGGCAAGTGTCTCAAGAGCTCAAGCGATTGGCTTCCTTAAATAAGCGCCCAATTCCTACTGGAAGGTTCGACAGGAATAAATCAGCTGCTGCTCATGCTCTTAAAGGTCTTAAGTTCATCAGCAAAACTGACGGCGGCGCTGGATGGGCCGCCGTCGAGAAGCGGTTCGATGAGATTACTGCTTCAACTACTGGCTTGCTTCCTCGGGCCAAATTTGGAGAATGCATAGGTATGAATAAGGAGTCTAAGGAATTTGCTGGAGAGCTATATGATGCGCTTGCTCGAAGGAGAAACATCACAACTGATTCCATTAACAAAGCACAACTCAAAGAGTTCTGGGACCAAGTTGCAGATCAAAGTTTTGATACTCGACTTCAGACCTTCTTTGACATGGTTGATAAAGATGCAGATGGTAGAATCACAGAAGAAGAAGTCAGAGAGATTATCGGCCTTAGTGCGTCTGCCAACAGGCTGTCAACTATCCAGAAACAATCTGATGAATACGCGGCAATGATCATGGAAGAGTTGGATCCTAATAACCTGGGATACATTATGATTGAGAACTTGGAAATGCTTTTACTGCAAGCACCAAATCAAACGGTGCAGAGAGGAGGCGAAAGCCGGAACTTGAGTCAGATGCTAAGTCAGAAACTTAAGCACACACAAGAGCCAAATCCATTAGTGAGATGGTATAAGAGTTTTAAGTACTTTTTGCTGGATAATTGGCAAAGAGTTTGGGTATTGTTGTTGTGGATTGGAATCATGGCTGGTCTATTTACTTGGAAGTATATTCAGTATAAACAAAAAGCTGCATATGGTGTTATGGGTCCCTGTGTGTGTCTTGCTAAGGGTGCTGCTGAGACAATCAAGCTCAACATGGCTATCATTTTACTCCCAGTTTGCAGAAACACAATTACCTGGCTTCGTAACAAGACCAGATTAGGTTCTGCAGTTCCTTTCGATGATAATCTCAATTTTCACAAAGTGATAGCAGTCGCGGTTGCACTTGGGGTTGCAATACACGGACTAGCTCATTTAACGTGTGATTTTCCTCGGCTTCTGAATGCTAGTGAAGAAGCATATGAACCAATGATATACTATTTTGGAGAACAGCCCGAAAGCTATTGGTGGTTTGTTAAGGGAGTTGAAGGGGTAACTGGAATTATAATGGTGATCCTAATGGCAATAGCTTTTACCCTAGCAACCCCATGGTTTAGAAGGGGCAGAGTCAGTTTCCCTAAACCATTTCACAAGCTCACTGGATTCAATGCCTTTTGGTACTCACACCATCTGTTTATCATTGTCTACACTCTACTTATTGTCCATGGAGAAAAACTATACATAACCAAAACTTGGTACAAGAGAACGACATGGATGTACCTTACTGTCCCACTAGCACTCTATGCTGGTGAAAGGTTGCTTAGAGCATTCAGGTCAAGCATCAAAGCCGTTAAGATTTTGAAGGTGGCTGTGTATCCAGGAAATGTGTTGGCCCTTCACATGTCAAAACCACAAGGCTACAAATACAAAAGTGGGCAATACATGTTTGTCAACTGTGCTGCGGTTTCACCATTTGAATGGCATCCATTTTCCATTACTTCGGCCCCAGGAGATGACTATCTCAGTGTCCATATTAGAACTCTTGGTGATTGGACCAGACAACTTAAAACTGTTTTCTCCGAGGTTTGCCAGCCACCACCTAATGGGAAAAGTGGACTCCTTAGAGCTGACTACTTGCAAGGAGAGAATAATCCTAATTTCCCAAGAGTGTTAATTGATGGACCATACGGAGCACCAGCACAAGACTACAAGCAGTATGAGGTGGTTTTATTGGTGGGTCTTGGAATTGGAGCTACACCAATGATCAGTATCGTTAAAGACATTGTCAACAACATGAAGGCCATGGACGAAGAAGAAAATTCCTTGGAAAATGGGCACGGGATGTCCAATGCAGCACAAAATGCTAGCCCAAATATGGCACAGAAGAGGGGTAAATCAGGTTCAGCAAGTGGAAGAAATAGCTTCAATACAAGGAGGGCATATTTCTATTGGGTCACAAGAGAACAAGGTTCATTTGACTGGTTCAAAGGTATAATGAATGAAGCTGCTGAAATGGATCATAAGGGAGTAATTGAAATGCACAATTATTGTACAAGTGTTTATGAAGAAGGTGATGCTCGTTCTGCTCTTATTACTATGCTTCAGTCACTTCATCATGCCAAAAATGGTGTAGACATTGTTTCTGGCACGAGAGTTAAGTCACACTTTGCTAAGCCTAATTGGAGAAACGTCTACAAACGCATTGCTCTCAACCACCCAGAGGCTAAAGTTGGAGTGTTCTACTGTGGGGCACCGGCACTAACGAAAGAGCTAAAACAACACGCATTGGATTTTTCACACAAGACATCCACCAAGTTTGATTTCCATAAAGAAAATTTTTGATCCATCAAAGAATTCCTCAAAACTGCCACGGACACTAAGTTGTTTTTCTAGAATCCACCACCTCTCTATTATGTACAGATAATGATGCACACCAAGTTGATATATATTAATTGTGGTTGTAATATTAGTCTATTACAAAAAATAAGATTTTTTAAAAGTATATAGATAAGATGCTGAAGGAATTAAGAATGTTCTCTTGGAGAGGCAGGCAGAAGATAGTGGAGTTGAACCTGTTTTAATGGGTGCCACCCACCACTAAATTTGGATTTTACATTATAATTGCATAGAGGAAGGTGGTTGTCATCATTGTTTTTTGTTATTGTTTATTTTTTGTACTCTTTTACGTGGTGGAAGAGAGAGTCAACTAGTCACCTACTTAGTAATTATTGACCATGATTTGTGGAAGTTTAATAGTTTCCAGTAATAATTGTATACTAGGCCTTCTTGTATAAAACAGAGCTATACAGTTTGAATACCATAACTTGATTTCTATAAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g117980.2.1SL2.50ch03:66973126..66978156939+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g117980.2SL2.50ch03:66972887..669786525,766+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g117980.2.1.1SL2.50ch03:66972887..66973730844+n/a
exonexon:Solyc03g117980.2.1.10SL2.50ch03:66976563..6697663674+1
exonexon:Solyc03g117980.2.1.11SL2.50ch03:66977282..66977856575+n/a
exonexon:Solyc03g117980.2.1.12SL2.50ch03:66978047..66978652606+1
exonexon:Solyc03g117980.2.1.2SL2.50ch03:66973870..66974032163+n/a
exonexon:Solyc03g117980.2.1.3SL2.50ch03:66974137..6697418549+2
exonexon:Solyc03g117980.2.1.4SL2.50ch03:66974305..66974418114+1
exonexon:Solyc03g117980.2.1.5SL2.50ch03:66974500..66974928429+n/a
exonexon:Solyc03g117980.2.1.6SL2.50ch03:66975048..66975431384+n/a
exonexon:Solyc03g117980.2.1.7SL2.50ch03:66975525..6697562096+n/a
exonexon:Solyc03g117980.2.1.8SL2.50ch03:66975925..66976040116+n/a
exonexon:Solyc03g117980.2.1.9SL2.50ch03:66976219..66976321103+n/a
intronintron:Solyc03g117980.2.1.1SL2.50ch03:66973731..66973869n/a+n/a
intronintron:Solyc03g117980.2.1.10SL2.50ch03:66976637..66977281n/a+n/a
intronintron:Solyc03g117980.2.1.11SL2.50ch03:66977857..66978046n/a+n/a
intronintron:Solyc03g117980.2.1.2SL2.50ch03:66974033..66974136n/a+n/a
intronintron:Solyc03g117980.2.1.3SL2.50ch03:66974186..66974304n/a+n/a
intronintron:Solyc03g117980.2.1.4SL2.50ch03:66974419..66974499n/a+n/a
intronintron:Solyc03g117980.2.1.5SL2.50ch03:66974929..66975047n/a+n/a
intronintron:Solyc03g117980.2.1.6SL2.50ch03:66975432..66975524n/a+n/a
intronintron:Solyc03g117980.2.1.7SL2.50ch03:66975621..66975924n/a+n/a
intronintron:Solyc03g117980.2.1.8SL2.50ch03:66976041..66976218n/a+n/a
intronintron:Solyc03g117980.2.1.9SL2.50ch03:66976322..66976562n/a+n/a
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Related viewsNone found
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