Solanum lycopersicum mRNA Solyc03g118310.2.1

mRNA details  
Name
Solyc03g118310.2.1
Type
mRNA
Length
1,946
Organism
Solanum lycopersicum
Description
BHLH transcription factor (AHRD V1 *-** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location(s)
SL2.50ch03:67224387..67226932
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0045449
Length
2546
Nb exon
5
Sifter term
  • GO:0016563
  • GO:0003700
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc03g118310.2.1 BHLH transcription factor (AHRD V1 *-** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding

AGAAAGTTTAGTAGTAATAATAGTGATAGCAGAGTTGAGTTTTCTCTCTCTGTGTTAAGTTGTCTTCTCTCTCATATAAAGGGAAAAAAAAGAAAAAATGATAACTGGAGTGAATGATATGGGTTGGATTGATGGTAAGGAGGATGGAGGAACTGGTTCTTGGGTTAATCAGAACAATGAAAATCATCAACAGAACAATGGTGGTTTTCCCAATGAAAATCATCAGCTGAACAATGGTGGTTTTACTAATTTCCAAGGTATGGTTGATGATGGAGGTGTGGATTGGTTTATGGGTGGTGGTGATAGTAACAATCATCACATCAACAACAACAACAACAATGGTGGTGGTGGTGGTGGTGGTAGCAACATGCAGAGCCACATTTCTTACTCTACAAGTTTCACTGAAGCTGAAAACAGTTTGCTTCTGCAACCTGTTGATTCTTCAGCTTCCTGCTCGCCTGTTTCTGGTAACGTTTTCAACAACATTGACCCTTCTCAGGTGAACTTCTTCATGCCCCAAAAATCTACTATTCCTTCTTCACTCACTGGGTTATCCAACAACCCAATGGATAACAGCTTCAATTTGGGTATGTTGAATCAAGCTGGGAACGGGATGATGAATACTGGGTATCATCATCTGGGTTCACCAAACCAAATGGGGACGAACAACCTGAGTTCTTATACTCAGTTTTCTTCTCCCAATCTGCTCCAGCTACCTCAGGTAGCTGGTGGGTACAGTTCGATGGGATTTGGGGCTAACAATTCTGCTAATGGGAACACTTTGTTTCTCAATCGGTCTAGAACTCATAAACCTTTAGACAATTTTGCTTCCATTGGAGCACAGCCAACTCTTTTCCAGAAAAGGATTGCAAAGAACTTGGTTAGTAATGGTGAAAATTTAGGTACAGAAATCGGTCAATCTTCCAGTAATCTGACTGATAAAAAAAGGAAGTCCAGCATGAATGATGAGTTTGAAGATGTTAGCATGGATGGAACATTGAATTACGACTCGGATGAGTTCATGGATATCTCTAACAAAATGGAAGATGGGATCAAGATTGGGGACAGCTCTAATGCAGCCAGCACTGTCAGTGGCGCTGATCAAAAGGGAAAAAAGAAGGGACCTCCAGCTAAGAACCTGATGGCGGAGCGACGCCGCAGAAAGAAGCTGAATGACAGGCTTTACATGCTGCGATCGGTTGTCCCAAAGATAACCAAGATGGACAGGGCTTCAATCTTAGGAGATGCAATTAAGTACTTGAAGGAGCTTCTGCATGACATCAATGAGCTGCATAATGAGTTGGAGTCCACACCAGCTAACAACTCTTCATTGAGTCCCGCAACCAGCTTCCATCCTCTGACACCGACTGCATCAGCTCTGCCAAGTCGTATAAAGGAGGAACTTGTTCCAAGCCCCCTGTCCAGCCCTACTGGACAACCTGCTAGGATTGAAGTGAGGGTCAGGGAAGGAAAAGCGGTGAACATTCATATGATCTGCAGCCGCAAACCAGGGGTTTTACTCTCAACAATGAAGGCTCTGGACAGTCTTGGACTGGACATTCAACAAGCTGTTATCAGCTGCTTCAATGGGTTTGTGTTGGATGTGTTCCGAGCTGAGCAATCGAACGAAGGTCAAGAGATGCATCCAGATCAGATCAAAGCTGTGTTGATGGAGACTGCTGGCTTTCAAGGGGGGACGATATAAGCTGCTCGATCTAGTATACGAAGGAGAGGCTCTATCGAAGATTTTGGACCTCAGGGTGCTATAGCTTTTAGACCTCAAGACTTTATTAGTTTACTTGTGTTTTCATGTTATTAGATGGTTACAGACCATGGTGGTCCGAACCGGGTTTTGTCCTTTTTCTTTTTTAGTCAGTTATATTGGTGTTTTCTTTAGGAGAAACATTGAGCTTATGAAGCTCCAAAACTGAATGCTATGAAATTCC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc03g118310.2.1SL2.50ch03:67224627..67226685529-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc03g118310.2SL2.50ch03:67224387..672269322,546-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc03g118310.2.1.1SL2.50ch03:67226841..6722693292-n/a
exonexon:Solyc03g118310.2.1.2SL2.50ch03:67225585..672267111,127-n/a
exonexon:Solyc03g118310.2.1.3SL2.50ch03:67225027..67225254228-n/a
exonexon:Solyc03g118310.2.1.4SL2.50ch03:67224785..67224955171-n/a
exonexon:Solyc03g118310.2.1.5SL2.50ch03:67224387..67224714328-n/a
intronintron:Solyc03g118310.2.1.2SL2.50ch03:67226712..67226840n/a-n/a
intronintron:Solyc03g118310.2.1.3SL2.50ch03:67225255..67225584n/a-n/a
intronintron:Solyc03g118310.2.1.4SL2.50ch03:67224956..67225026n/a-n/a
intronintron:Solyc03g118310.2.1.5SL2.50ch03:67224715..67224784n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17776944%2Fdetails feature 17776944
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)