Sol Genomics Network

Solanum lycopersicum gene Solyc03g121880.2

Name Solyc03g121880.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc03g121880	Length 5,346

Description

Protein phosphatase 2C (AHRD V1 ***- A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C

Location(s)

SL2.50ch03:69912155..69917500

GFF source

ITAG_eugene

From BOGAS: 1

Length: 5346

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc03g121880.2.1	SL2.50ch03:69912155..69917500	1,919	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc03g121880.2 SL2.50ch03:69912155..69917500
AAGTTGTATTTTTGTTCTCTCTCATGTGTATCACAAAGAAAAAAAGAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGGTAAGCTTACTTTTGTTACTGTTTTAGTTGAATTTATTGTAAGTAGGACCTTTTTTTTTTTTTTTATGTTGTTGAATGGTTTGTTGCTTAAAGATTCAATTTTTATCTGTTGGGTTGGAGGAAGAAGAAGAGTATATTTAGTAAATGACCTGTATTTTGAGAGGTGGACATGAGTTGCCTCAGATCCATGAAACCCAAGTTACATGTGGCAAAAAGGTTGTATCTTTTTAGGGTTTTTTCATGTGATTCTTGATTAGTTGTCTGTTTTCTTCCCATTACTAGGTTCTTTTCCATGATTCTTTCACTTTCACTTCTTCAATTCATGGATAAGGGTTTGATTTTGTCGTTTTCCCCATTTTCTTGTGTATTTAAGGGTTGGTGGTGGTGGAGCTAAGATTTGCTCTTCTTAGTCCTGTTTCTTCTCTTGAAGAGAGAGATATAATTGCATGATTTTTTAGTTCCAGGTACAAGAAAGGTCCCCCCAACTGTTCTCAGTCTAGGACGTGCCATCTACAGATCTGTTTATAGCAACAGATCTCCTTCACACTCTTGTTAGTCTCACTTATCTGGAGCTTGTTCCACCTTTTCTATGATGTTGGTAGTGTACCCTTTACTTCTAGTAGTGAGCTGTTGACTGAGATCTACTTGCCTCATTCAATTTTTATCTCTCCCCATTTTTGTGGATTCCTACCTCGTTCTCCCTGTGCTTATAATTTAGCTGTCTTGCACATTTTTGTGGATTCCTAGCTCATTTCATTGTGGATTCAATTTAGCTATTTTATCGCACTTGTGAGTTCCCTTCTAAAGCAGTCCTACTCTGTGAAACATAAAGCTTGGAACAATTTGTTGCTGGTAGTGCTGCACGGACTAACGCGGTTGACTCAATTGCATATTGTTTTCACTAGAAAGAATTAATGGAAGAGATGTCTCCAGCTGTTGCTGTTACACTCAGCTTAAGCAGCTCTATCTGTGATAACCCTGCAATTTCGAACCATGTAGAAATCACAAGGCTCAAATTAGTGACTGACACAGCTAGCTTACTTTCAGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTATAATGAATATTGTTTGTTTTCTCTTGATTAATTAGCCTATTAAGTAAATCAATTTTTCACATAAATTATTTAGTCCAGATCTTGCGATTACCTTATATGCACTTCGCCAGCCATTTCTTCACCCCATGATTTCAACTGTGTAGTATGATAGACTTCCAGTAAAATCTACAAATTTAACCTAGTTCTCCAGTTTAACTTCCTGGATGTTTGTTCTATCATCAGTTTGTTTCCTGATAAATGTCAACCCAATGACAACTAAGCTGATCATAACTGACTGCTGTTTCGTCATGCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAAGTAAAACATACTTAGCATCAACCTCTTGTTTTCTTTTTTTGTTCTTCTCTTACTTTATTTTTTCACATACATGTGTCTAATTTTGACAGGAAAGAATGCCGTTGATGCATTACCATCTCACTCTTTTACCTTGTATTCTTTTACCAGCCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTTGGTGTTCTAAAACCTTTCAGCTTGCATGACTCTTTGCTTTCATGATTTGTTATTGGTGTGCTGTGCAATGGATTTGCTTGATACCTGTTTTCTTTTGGTAAATGTTAACATTCATGTATAGAAAATACTTGGCTATATTATCCTCATAAGGGAACCTCTGAGATCTTTAGGGAATGCACATCAGGTGATGTGTGGCTAATATTGATATCAAGCTGTTATTGCCCAAGTTAGAACAGCTGCTAGTATTGAAGATCTTCTGCGCACTCGCGTTACTTTAGGTTCAATGATTCCCATGAATATTGGCTAATACTCTCACGTTCGTCTTGTCTTGCGAAAATTTTATGCCCATAGAAAATGTAGAGAAATTCAAGTGCCAAGAGAGCTTGAATTTTTTTTATATATTGGATTAGGACACCTTTATCAACGGATATTGGATTGAGATGTGATCTAGATTAGAGACATGTATATCAAGAATTCATATAATCAAGCCCAATTTAGTTTGAGATTGAGGCGTAGTTCTAGTTATTGTTTCCCGTCCAAATTCTGGCTTCTAATAAGCAGGATCCCATGGGGCAATTACTGGGAACGACCCACTGAAATGTCTTAACAATATAACTAGGCATTGCATGTTCTTTGATCACCAACAGTTTCAGTACTCTCCATGGACCATGGTCAATAAAATCTAGGAATGTCAATCAGGGATATCCCTCTACATCCTCTTTTTAGTTTTGCAAGTATAGCTAGAATGACTTTTTGGTTATTATTGTTAATATATTGAATCGACTACTGTATGTGTGGGCTCAATCTTACATGGTCAACATTTAATATATTCTCAAGGGGCAGCCTCAAGGTTCTGCATGTTCCTCATTATGTTTAATTCAGCGATATACCTCTACATTTTTTATTTTTTATTTTTGAAGACAAGGGAAACCCGGAGCCGCTACCCTTTTGGGTGCGCACAGGGTAAAACCCCGCTCCTATACAATAGCTTGCAAACCACATAAGAGAGGTAACCCGCACTAGGCAAGCCTGGTGTGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGTCCACCCCGAAGGGTATATACCTCTACATTTTAATCCTCAAGTTTCCTTTATATTACATTGTATAGAGTTTAATATAGACGTTGATCAAGTAATTGTTCGAATTGTAGACCAGAACAGGTAGTGGCCAGTGGCTGACATGTTAAATCAAGTATTAAATTCTCTTTCCGGCCCAATTCACATGGCACCGTTTTGACTTAGCACAATCTTTAAGAAAGAAAGGAAGACTTTTGAAATTTGTGATCTAGATACTCTCTGATTATTTGTAATTTGTATACCTATAGACCATTTCATTTAGGGTAATAGGGCAATTTTAAAGTTAAGTTGTTTCTAATTATAGAAACGTGACACTCTTTTTGGAACGAACTAAAAAGGAAAATAAGTCACATAAATTGGGATAGATGGGGTAACGTGTAACAGGTAGAAGTATATGATTTTATTAATTTGGTTCATTGGTCTCTGGGGAAATAATTTCCATTTATATTAAGGTCAATTTTTCAAAGAAAGAACTGTAAAGGAAAGTAAGGTTAGTCTTTTCTTAATAGAGAGTTAACATATATGACCTAGGGTGCAACGCGGTCTGTTCGTTTTTCTCCCTGAGTTTCCGATACCACCTTGGTTTTGCTTTCTCTTAGTTCTTATTTTATCGTTTGTTTCAAGTGCCCGTCTTTGGTTATTTGTCTCATTATTCTGCAGCTGCTAGTGCTTATGGTGTCAATTTCTCAATAGAGTTTGGATAGATGGAGTGAAAGTTAATACTTTACTGTTTCTCTCTGTTTATTTTTGTGTCCCATTATCCTCAGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTACTTCTTCCGTTCGAGTATATGTTATAAAAGCTAAGCCACAATTGGTTACT

Download sequence region

Download sequence (5.3Kb)

Get flanking sequences on SL2.50ch03

mRNA Solyc03g121880.2.1

Ontology terms

terms associated with this mRNA

GO:0005515 – protein binding

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc03g121880.2.1 Protein phosphatase 2C (AHRD V1 ***- A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C
AAGTTGTATTTTTGTTCTCTCTCATGTGTATCACAAAGAAAAAAAGAAAATAAAATCTTGTAAAGGGGCTGTAGCTGCAAGGTGTTTTGGTAAAAGGGTTTTTGTTGATCCTACATCTTTGTTGCATGCTGAGTCAAATACCAGTTGGGATGGAAAAAGCAACGGTATGAAAGTTGATGTTGGTAGAGTTCCCTTGTTGACCCTAGGAGAAAGCTCTGGAAAATGTAGTCTGCCGCAGACTGTATTGGGAGCTGAAAATGGCCTGATTGTTAGCGATAGCATCATTCAGGGAAGTGATGAAGATGAGATTTTATCTGTTGGAGAGGATCCATGTGGAATTAATGGCGAGGAGTTGTTGCCACTGGGCGCTAGCTTGCAGTTGAGCTTGCCAATTGCTGTTGAAATTGAGGGTATTGACAATGGACAAATAGTTGCCAAGGTCATAAGTTTGGAAGAAAGGAGTTTAGATAGAAAGGTTAGTAATACCATAGTTGCTCTTCCAGATGATGAAATTACTAGTGGCCCTACACTTAAGGCATCTGTAGTGGCCCTTCCATTGCCCAGTGAGAAGGAGCCTGTCAAAGAAAGTGTCAAGAGTGTGTTTGAATTGGAATGTGTGCCACTCTGGGGTTCTGTATCTATCTGTGGAAAGAGACCGGAGATGGAGGATGCTCTTGTGGTTGTTCCTAATTTCATGAAAATTCCTATCAAGATGTTTATTGGTGATCGTGTAATTGATGGACTAAGTCAAAGTTTGAGTCACCTGACATCTCATTTCTATGGAGTATATGATGGTCATGGAGGATCTCAGGTTGCGGATTATTGCCGTAAACGTGTTCATCTAGCATTAGTTGAGGAATTAAAACTTCCCAAACATGATTTGGTGGATGGAAGTGTAAGGGATACCCGGCAGGTGCAGTGGGAGAAGGTTTTTACTAATTGCTTTCTCAAGGTTGATGATGAAGTTGGAGGAAAGGTCATAGATCTCTGTGATGACAACATTAATGCCTCTAGCTGCACCTCTGAGCCTATAGCTCCAGAAACTGTTGGGTCCACCGCAGTTGTAGCGGTGATTTGTTCATCTCATATTATAGTTGCTAACTGTGGGGATTCAAGAGCAGTCCTTTATCGTGGCAAAGAAGCAGTGGCATTGTCAATCGATCACAAACCAAGCAGAGAAGATGAGTATGCCAGAATTGAAGCATCTGGTGGTAAGGTCATTCAGTGGAATGGACATCGTGTATTTGGCGTTCTTGCAATGTCAAGATCTATTGGTGACAGATATTTGAAACCATGGATAATACCTGAACCAGAAGTTATGTTTGTACCACGTGCTAGAGAAGATGAATGCCTAGTTTTAGCCAGTGACGGTTTGTGGGATGTGATGACGAATGAAGAAGCTTGTGAAATGGCTAGACGGCGAATTCTGCTGTGGCACAAAAAGAACGGGACTAACCCTCTGCCTGAAAGGGGCCAGGGAGTGGATCTTGCTGCACAAGCAGCAGCGGAGTATCTTTCATCGATGGCTCTTCAGAAAGGCAGCAAAGACAATATATCCGTGATTGTGGTGGACCTTAAAGCTCACAGGAAGTTCAAAAGCAAAAGTTAGAGATGACATGTTCACTACATTTGGTTTAGTATAAATCTGTACACGGCGACGGGTATAAATCTCATTATTACATAACTCAGTCCATTAATTTTTCCTATGGGCTTAAGGTGTGTGTATGAGAATAGTATTTTAGCAATGTATTATAGAAGAAAAAACAGTTGACAAACGACGTTTATCCAAATTTTTTGGTGTTTGTTGCGCCAGAAAATGGCTATGTAAATTGAGCATGTTGTAGCAAATATCAGAAATGCAATTTCTTACTTCTTCCGTTCGAGTATATGTTATAAAAGCTAAGCCACAATTGGTTACT

Download sequence (1.9Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc03g121880.2.1	SL2.50ch03:69913175..69917190	545	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc03g121880.2	SL2.50ch03:69912155..69917500	5,346	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc03g121880.2.1.1	SL2.50ch03:69912155..69912261	107	+	n/a
exon	exon:Solyc03g121880.2.1.2	SL2.50ch03:69913309..69914012	704	+	n/a
exon	exon:Solyc03g121880.2.1.3	SL2.50ch03:69914309..69914665	357	+	n/a
exon	exon:Solyc03g121880.2.1.4	SL2.50ch03:69914813..69914918	106	+	n/a
exon	exon:Solyc03g121880.2.1.5	SL2.50ch03:69916856..69917500	645	+	n/a
intron	intron:Solyc03g121880.2.1.1	SL2.50ch03:69912262..69913308	n/a	+	n/a
intron	intron:Solyc03g121880.2.1.2	SL2.50ch03:69914013..69914308	n/a	+	n/a
intron	intron:Solyc03g121880.2.1.3	SL2.50ch03:69914666..69914812	n/a	+	n/a
intron	intron:Solyc03g121880.2.1.4	SL2.50ch03:69914919..69916855	n/a	+	n/a

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Related views

Genetic loci

Tomato locus Solyc03g121880

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17781770%2Fdetails feature 17781770

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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