Solanum lycopersicum mRNA Solyc04g009620.2.1
 mRNA details
|
| Name | Type |
Length
1,578
|
Organism |
|
Description
Chorismate synthase (AHRD V1 **** A5APN1_VITVI); contains Interpro domain(s) IPR000453 Chorismate synthase
|
|
Location(s)
SL2.50ch04:2998013..3006166
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| Ontology term(s) |
|
GFF source
ITAG_eugene
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- Interpro2go term
- GO:0009073
- Length
- 8154
- Nb exon
- 13
- Sifter term
- GO:0004107
- GO:0042602
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc04g009620.2.1 Chorismate synthase (AHRD V1 **** A5APN1_VITVI); contains Interpro domain(s) IPR000453 Chorismate synthase
CCAAACAGAGTGTGATCACTGTATTGAAAATTCTGTGTCTATACCTAAACTAACCAACCAAAATTCCAGTAGAGAAGGAACGAAAATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGAGGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAGGTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCAAGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAGCTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGC
CCAAACAGAGTGTGATCACTGTATTGAAAATTCTGTGTCTATACCTAAACTAACCAACCAAAATTCCAGTAGAGAAGGAACGAAAATGGCTTCATCTATGCTTACCAAACAGTTTCTCGGGGCTCCATTTTCAAGCTTCGGATCCGGGCAGCAACCATCCAAGCTCTGTTCTTCAAACCTCCGATTCCCTACTCACCGATCACAGCCCAAACGACTAGAGATACAAGCTGCTGGTAATACATTTGGAAATTATTTCCGCGTTACAACGTTTGGAGAATCTCACGGTGGTGGTGTCGGTTGTATAATTGATGGATGTCCCCCTCGACTCCCACTCTCAGAGTCGGATATGCAAGTGGAACTTGACAGGAGGAGGCCAGGTCAAAGCCGAATTACCACACCAAGAAAAGAGACTGATACTTGCAAAATATCATCAGGCACTGCTGATGGTTTGACTACGGGATCTCCAATCAAAGTTGAAGTACCCAACACTGACCAGAGAGGAAATGACTATAGTGAAATGTCCCTTGCTTATAGGCCATCTCATGCTGATGCAACTTATGACTTCAAGTATGGAGTTAGATCAGTACAGGGGGGAGGTAGATCCTCAGCAAGAGAAACCATCGGGAGAGTCGCTGCTGGAGCTGTTGCCAAGAAAATTCTCAAACTTTATTCAGGAACTGAGATCCTTGCTTATGTTTCACAAGTTCACAATGTTGTACTTCCAGAGGATTTAGTTGATAACCAGATTGTGACACTAGAGCAGATTGAAAGCAATATTGTTCGTTGCCCGAACCCTGAATATGCAGAAAAGATGATTGGTGCCATTGATTATGTACGAGTGAGGGGGGATTCTGTTGGTGGTGTCGTAACTTGCATTGTTAGAAATGTTCCACGAGGTCTTGGTACACCAGTCTTTGATAAACTTGAAGCTGAGCTGGCTAAAGCTTGCATGTCATTACCAGCAACAAAGGGTTTTGAGTTTGGAAGTGGCTTTGCAGGTACTTTCATGACTGGCAGTGAGCATAATGATGAGTTCTTTATGGATGAACATGACCAAATCAGGACAAAAACCAATAGATCTGGTGGTATCCAGGGAGGCATATCAAATGGAGAAATTATTAATATGAGAGTAGCATTCAAGCCAACTTCTACAATTGCAAGGAAGCAACATACTGTTAGTAGGGATAAACATGAGACTGAACTCATTGCTCGTGGTCGCCATGATCCTTGTGTGGTTCCACGAGCTGTTCCGATGGTGGAAGCAATGGTCGCCCTAGTGCTCGTGGATCAGTTGATGACTCAATATGCACAATGTATGCTATTTCCAGTCAATCTTACACTACAGGAACCTTTGCAGCCATCGACAACCAAGTCAGCTTAGGTTCCCCTTTAAAAGGAGCTGAGCAGTTTGCGTACCCCCCCCCCCCCCCATTACAACTTCTCACTACATGGCTTCTCACATTTCTGGCATTCTACTACGTTTGGAGAGTGAAATTTTTTGTTAAAAGAAGTTATCCTCAACACATAGAGAGTTATATTGTTGAACAGAGAAATGTATATAGATTTTGTTGTTGGAGC
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc04g009620.2.1 | SL2.50ch04:2998209..3006081 | 432 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc04g009620.2 | SL2.50ch04:2998013..3006166 | 8,154 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc04g009620.2.1.1 | SL2.50ch04:3005949..3006166 | 218 | - | 2 |
| exon | exon:Solyc04g009620.2.1.10 | SL2.50ch04:2998967..2999061 | 95 | - | n/a |
| exon | exon:Solyc04g009620.2.1.11 | SL2.50ch04:2998796..2998861 | 66 | - | n/a |
| exon | exon:Solyc04g009620.2.1.12 | SL2.50ch04:2998621..2998705 | 85 | - | 2 |
| exon | exon:Solyc04g009620.2.1.13 | SL2.50ch04:2998013..2998346 | 334 | - | n/a |
| exon | exon:Solyc04g009620.2.1.2 | SL2.50ch04:3004837..3004987 | 151 | - | 1 |
| exon | exon:Solyc04g009620.2.1.3 | SL2.50ch04:3004491..3004567 | 77 | - | 2 |
| exon | exon:Solyc04g009620.2.1.4 | SL2.50ch04:3004349..3004407 | 59 | - | n/a |
| exon | exon:Solyc04g009620.2.1.5 | SL2.50ch04:3003640..3003723 | 84 | - | n/a |
| exon | exon:Solyc04g009620.2.1.6 | SL2.50ch04:3003425..3003517 | 93 | - | n/a |
| exon | exon:Solyc04g009620.2.1.7 | SL2.50ch04:3002588..3002668 | 81 | - | n/a |
| exon | exon:Solyc04g009620.2.1.8 | SL2.50ch04:3000638..3000769 | 132 | - | n/a |
| exon | exon:Solyc04g009620.2.1.9 | SL2.50ch04:3000427..3000529 | 103 | - | 2 |
| intron | intron:Solyc04g009620.2.1.10 | SL2.50ch04:2999062..3000426 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.11 | SL2.50ch04:2998862..2998966 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.12 | SL2.50ch04:2998706..2998795 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.13 | SL2.50ch04:2998347..2998620 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.2 | SL2.50ch04:3004988..3005948 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.3 | SL2.50ch04:3004568..3004836 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.4 | SL2.50ch04:3004408..3004490 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.5 | SL2.50ch04:3003724..3004348 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.6 | SL2.50ch04:3003518..3003639 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.7 | SL2.50ch04:3002669..3003424 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.8 | SL2.50ch04:3000770..3002587 | n/a | - | n/a |
| intron | intron:Solyc04g009620.2.1.9 | SL2.50ch04:3000530..3000637 | n/a | - | n/a |
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