Solanum lycopersicum mRNA Solyc04g072880.2.1
 mRNA details
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| Name | Type |
Length
1,282
|
Organism |
|
Description
RNA polymerase II holoenzyme cyclin-like subunit (AHRD V1 **** SSN8_NEUCR); contains Interpro domain(s) IPR015432 Cyclin H
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Location(s)
SL2.50ch04:59832373..59837784
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| Ontology term(s) |
|
GFF source
ITAG_eugene
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- Interpro2go term
- GO:0006413
- Length
- 5412
- Nb exon
- 13
- Sifter term
- GO:0008353
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc04g072880.2.1 RNA polymerase II holoenzyme cyclin-like subunit (AHRD V1 **** SSN8_NEUCR); contains Interpro domain(s) IPR015432 Cyclin H
ATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGAGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAGGGTTCACTTGATACTGCTAGGATTGAAGCAGATAAGATTATGCGTTCTGATGGACCACTTCTTTTCCCACCTGGGCAGTTGGCATTGACAGCTTTACATAGAGCTAACGCAGTGCATAGCATATTTGATTTTGAGAGGTACCTAAGAAGTGTCCTATCACGTTATCAGCCAGCTCATGCCATTTCAGAACTTACTGGTTCTATAGATGCCATTGATTCTTTGATTGGTAAACTTTTGACTCCGACCTCCAAAGATGTGAAGCACGTGGATCGGAAACTCAAATCATGTCTTGATCCGGGTTCACATGACAAGAGTAAAAAAAGGAAGCATAGATCCAAAGATAGCTCACATGAGGCTACTGACTTATCTTGAACTGCTCTAACTCAAGTTTGTAGCTTCAAAGCATATCTTCTTTGCCCAGTGGAAATAGCGTTTCTCATTGCTGCTCATCAGTTCCCTAATATAGAACAAAAATTGAAGCCAGACTGTAGAAGTAGAGGCGGGTCGAGGATTTAAGATCACAAATTTCTCAAGACTTTTTTCTTAAATTTTGTACTATGAAATCAATTAGTAGTTTAAACTTCGAGTGTTAGTTAACCTGGAATTTACTGTTTGGAGATGTAAAAGCTCACTTTTTAGAAATGAGAATGTTGTTCTTAATGAGAACTTC
ATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGAGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAGGGTTCACTTGATACTGCTAGGATTGAAGCAGATAAGATTATGCGTTCTGATGGACCACTTCTTTTCCCACCTGGGCAGTTGGCATTGACAGCTTTACATAGAGCTAACGCAGTGCATAGCATATTTGATTTTGAGAGGTACCTAAGAAGTGTCCTATCACGTTATCAGCCAGCTCATGCCATTTCAGAACTTACTGGTTCTATAGATGCCATTGATTCTTTGATTGGTAAACTTTTGACTCCGACCTCCAAAGATGTGAAGCACGTGGATCGGAAACTCAAATCATGTCTTGATCCGGGTTCACATGACAAGAGTAAAAAAAGGAAGCATAGATCCAAAGATAGCTCACATGAGGCTACTGACTTATCTTGAACTGCTCTAACTCAAGTTTGTAGCTTCAAAGCATATCTTCTTTGCCCAGTGGAAATAGCGTTTCTCATTGCTGCTCATCAGTTCCCTAATATAGAACAAAAATTGAAGCCAGACTGTAGAAGTAGAGGCGGGTCGAGGATTTAAGATCACAAATTTCTCAAGACTTTTTTCTTAAATTTTGTACTATGAAATCAATTAGTAGTTTAAACTTCGAGTGTTAGTTAACCTGGAATTTACTGTTTGGAGATGTAAAAGCTCACTTTTTAGAAATGAGAATGTTGTTCTTAATGAGAACTTC
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc04g072880.2.1 | SL2.50ch04:59832372..59837486 | 328 | + | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc04g072880.2 | SL2.50ch04:59832373..59837784 | 5,412 | + | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc04g072880.2.1.1 | SL2.50ch04:59832373..59832432 | 60 | + | n/a |
| exon | exon:Solyc04g072880.2.1.10 | SL2.50ch04:59836894..59836952 | 59 | + | n/a |
| exon | exon:Solyc04g072880.2.1.11 | SL2.50ch04:59837034..59837118 | 85 | + | 1 |
| exon | exon:Solyc04g072880.2.1.12 | SL2.50ch04:59837234..59837322 | 89 | + | n/a |
| exon | exon:Solyc04g072880.2.1.13 | SL2.50ch04:59837426..59837784 | 359 | + | 1 |
| exon | exon:Solyc04g072880.2.1.2 | SL2.50ch04:59832539..59832589 | 51 | + | n/a |
| exon | exon:Solyc04g072880.2.1.3 | SL2.50ch04:59833712..59833790 | 79 | + | n/a |
| exon | exon:Solyc04g072880.2.1.4 | SL2.50ch04:59833922..59834034 | 113 | + | 2 |
| exon | exon:Solyc04g072880.2.1.5 | SL2.50ch04:59834113..59834186 | 74 | + | n/a |
| exon | exon:Solyc04g072880.2.1.6 | SL2.50ch04:59834428..59834548 | 121 | + | 1 |
| exon | exon:Solyc04g072880.2.1.7 | SL2.50ch04:59834639..59834707 | 69 | + | n/a |
| exon | exon:Solyc04g072880.2.1.8 | SL2.50ch04:59834853..59834897 | 45 | + | n/a |
| exon | exon:Solyc04g072880.2.1.9 | SL2.50ch04:59835849..59835926 | 78 | + | n/a |
| intron | intron:Solyc04g072880.2.1.1 | SL2.50ch04:59832433..59832538 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.10 | SL2.50ch04:59836953..59837033 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.11 | SL2.50ch04:59837119..59837233 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.12 | SL2.50ch04:59837323..59837425 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.2 | SL2.50ch04:59832590..59833711 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.3 | SL2.50ch04:59833791..59833921 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.4 | SL2.50ch04:59834035..59834112 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.5 | SL2.50ch04:59834187..59834427 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.6 | SL2.50ch04:59834549..59834638 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.7 | SL2.50ch04:59834708..59834852 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.8 | SL2.50ch04:59834898..59835848 | n/a | + | n/a |
| intron | intron:Solyc04g072880.2.1.9 | SL2.50ch04:59835927..59836893 | n/a | + | n/a |
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