Solanum lycopersicum mRNA Solyc04g081580.2.1
 mRNA details
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| Name | Type |
Length
2,665
|
Organism |
|
Description
ATP dependent RNA helicase (AHRD V1 **** B3LTF9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
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|
Location(s)
SL2.50ch04:65525073..65531509
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0008026
- GO:0005524
- Length
- 6437
- Nb exon
- 19
- Sifter term
- GO:0004004
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc04g081580.2.1 ATP dependent RNA helicase (AHRD V1 **** B3LTF9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
CCCTGCAACTCAATGCACAGATTCTTAAACCCTCACAAAATCAGCAGTCATCCAGGTATCAATGGCTACCGATTTCTCGTTTGAACAACCCAGCGATGAAGAAGTTGAATATGAGGAGAATGATGACAGTGAAGAAGAAGAACATGAAGTGGATGAAGATAATGAAGATGCCGACCCCAAACCTCGAACGAATAAGAAGCCGCAATCTCCATGGGACTTCTCTTCTTACTCTGAATCCGTTGCTGATGAACACAGCCACCGTAGAACAACTTCAATTGATTTCAAAATATCTAAGGCTCGTCAACAACTCTCTGCTCCTATAGCTAAACCAATCGAGGAAGATTCCGATTCCGACGATTCAGAACCTCACCGCCAGGAAGAGTACAGACCCGACGATGAAGATGGAGATGATGACGTAGATACGCATGTTGAAAAGAAACCATTTTTCGCCTCATCAGAAGGAGTTACATTTCATGCAAATTCGTTTATTGAGCTCCATATCTCTAGGCCGTTGCTTCGGGCTTGTGAAGCATTGGGTTACAGTAAGCCTACCCCAATTCAGGCGGCTTGCATTCCACTGGCTTTAACCGGTCGAGATATATGCGGTAGTGCTATAACAGGATCTGGAAAGACAGCTGCCTTTGCCTTACCGACACTCGAGAGACTGTTGTACCGTCCAAAAAATAGGCCTGCAATTAGGGTTCTTATTCTTACTCCAACAAGAGAGTTGGCTGTTCAGGTTCATAGTATGATAGGTAAACTTGCCCAGTTTATGCCAGATATCAGATGTTGTTTGGTTGTTGGTGGTCTGTCAACCAAGGTGCAAGAGGCAGCCTTGAGAACAATGCCTGATATTGTCGTGGCCACTCCAGGACGTATGATAGATCATCTACGGAACTCCATGTCAGTTGATTTGGATGATCTTGCAGTATTGATTCTTGATGAGGCCGATCGTCTACTGGAGCTGGGTTTCAGTGCTGAAATTCGTGAGCTGGTTAGATTGTGTCCGAAGCGGAGACAGACCATGTTGTTTTCTGCGACAATGACTGAGGAAGTTGATGAGCTCATCAATCTCTCACTGAATAAACCTTTGCGCCTGTCAGCTGATCCATCTACAAAACGGCCTGCAACATTGACTGAAGAGGTAGTTAGAATACGGCGCATGCGTGAAGGAAATCATGAAGCTGTTCTCCTTGCACTGTGCACCAAGACTTTCACTTCCAAAGTGATTGTTTTCAGTGGTACAAAGCAAGCAGCTCATCGGTTGAAAATTATATTTGGTTTACTTGGTTTCAAAGCAGCTGAGCTACATGGAAATCTTACGCAAGCCCAGCGTCTAGATGCTTTGGAACTTTTCAGAAGACAGGAAGTGGATTTTTTGATTGCAACCGATGTTGCAGCTCGTGGACTTGACATTATTGGTGTTCAAACTGTTATAAATTTTGCGTGCCCACGTGATCTTACTAGTTACGTTCATCGAGTGGGTCGGACAGCTAGAGCTGGTAGAGAAGGTTATGCCGTTACATTTGTCACAGATAATGATAGGTCTCTTCTAAAAGCCATTGTTAAACGAGCTGGTTCAAGGCTAAAGAGTCGAATTGTAGCAGAACAATCTATAACTAAGTGGGCACAAGTGATTGAACAACTTGAGGATCAAGTGTCTGCAGTTATGCAAGAAGAGAGGGAAGAGATGGCACTAAGAAAAGCTGAAATGGAAGCAAATAAGGCAGAGAATATGATTGCCCACAGGGATGAGATTTATTCACGTCCTAAAAGGACATGGTTTGTCACAGAAAAGGAGAAAAAGCTAGTCCAAAAGGCAGCAAAGGAGAATGCAGCAGCCAAAGAAAATGGTTCTCAGAGTAAGGTAATGAGTGCCGAACAAGCAGAAGACCTGAAGATGAAGGAAAAGAGGAAGCGAGAACGAGAGAAAAATCTGCCGAGGAAGAAAAGAAGGAAGTTGGAGGCTGCTCGAGAGCAATTAGAAGATGAAGATGACTTGGATGATGGCAAAGACAAATCAAAGAAAGAGAAATCTGGAATTTCCTTAGTTGATCTTGCTTATCGTCGTGCAAAAGCAGTCAAGGCTGTGAACAAGGCAGTTGATGCTGGCAAGATTGTTAGGAAGGCCGGAAATAAACCAAAACCGAAAAGCAGAGCATCTGAATCAAGGACAGAAGAAATGCAGGATATTTTTCAAAATGATACGAGTGAGAGAAAACAAAGAAAACCACTTCATGCCGGTGGAAAGAAGAAGTCCTCATTCAAGAGCAAGTCACGGTACAAGAGGAGGTAAACACTTGCAAAAAACCATGACAATCATCTGGAAATCAAGTTACTGAAACGAGGTAGACTCATCAAACATGACTACCCCATCGTAACAAAGGATGGATTATGTAAACACTTACTCGAGATCTCACTTATCAGATTCCCCCGTGGAAGACAATTTAGTCTGAAGAATTCGCCCCGACTTGTACCAAGACAAGTAGCTTCTTAGAGTGTTGCTGATATTGAGCTTGTAGCTTTATTTTAAGAGTAGGTCCCCAGTTCTTAGTTTCAGTTTTGCAGAGAGTGTATTTTATCTCATTAGTATTTGTTTTGTTTAAGACTGAGTACTCGATGCATCTGTACATGTATTCGATTTTGACAAATATTTACGATATTG
CCCTGCAACTCAATGCACAGATTCTTAAACCCTCACAAAATCAGCAGTCATCCAGGTATCAATGGCTACCGATTTCTCGTTTGAACAACCCAGCGATGAAGAAGTTGAATATGAGGAGAATGATGACAGTGAAGAAGAAGAACATGAAGTGGATGAAGATAATGAAGATGCCGACCCCAAACCTCGAACGAATAAGAAGCCGCAATCTCCATGGGACTTCTCTTCTTACTCTGAATCCGTTGCTGATGAACACAGCCACCGTAGAACAACTTCAATTGATTTCAAAATATCTAAGGCTCGTCAACAACTCTCTGCTCCTATAGCTAAACCAATCGAGGAAGATTCCGATTCCGACGATTCAGAACCTCACCGCCAGGAAGAGTACAGACCCGACGATGAAGATGGAGATGATGACGTAGATACGCATGTTGAAAAGAAACCATTTTTCGCCTCATCAGAAGGAGTTACATTTCATGCAAATTCGTTTATTGAGCTCCATATCTCTAGGCCGTTGCTTCGGGCTTGTGAAGCATTGGGTTACAGTAAGCCTACCCCAATTCAGGCGGCTTGCATTCCACTGGCTTTAACCGGTCGAGATATATGCGGTAGTGCTATAACAGGATCTGGAAAGACAGCTGCCTTTGCCTTACCGACACTCGAGAGACTGTTGTACCGTCCAAAAAATAGGCCTGCAATTAGGGTTCTTATTCTTACTCCAACAAGAGAGTTGGCTGTTCAGGTTCATAGTATGATAGGTAAACTTGCCCAGTTTATGCCAGATATCAGATGTTGTTTGGTTGTTGGTGGTCTGTCAACCAAGGTGCAAGAGGCAGCCTTGAGAACAATGCCTGATATTGTCGTGGCCACTCCAGGACGTATGATAGATCATCTACGGAACTCCATGTCAGTTGATTTGGATGATCTTGCAGTATTGATTCTTGATGAGGCCGATCGTCTACTGGAGCTGGGTTTCAGTGCTGAAATTCGTGAGCTGGTTAGATTGTGTCCGAAGCGGAGACAGACCATGTTGTTTTCTGCGACAATGACTGAGGAAGTTGATGAGCTCATCAATCTCTCACTGAATAAACCTTTGCGCCTGTCAGCTGATCCATCTACAAAACGGCCTGCAACATTGACTGAAGAGGTAGTTAGAATACGGCGCATGCGTGAAGGAAATCATGAAGCTGTTCTCCTTGCACTGTGCACCAAGACTTTCACTTCCAAAGTGATTGTTTTCAGTGGTACAAAGCAAGCAGCTCATCGGTTGAAAATTATATTTGGTTTACTTGGTTTCAAAGCAGCTGAGCTACATGGAAATCTTACGCAAGCCCAGCGTCTAGATGCTTTGGAACTTTTCAGAAGACAGGAAGTGGATTTTTTGATTGCAACCGATGTTGCAGCTCGTGGACTTGACATTATTGGTGTTCAAACTGTTATAAATTTTGCGTGCCCACGTGATCTTACTAGTTACGTTCATCGAGTGGGTCGGACAGCTAGAGCTGGTAGAGAAGGTTATGCCGTTACATTTGTCACAGATAATGATAGGTCTCTTCTAAAAGCCATTGTTAAACGAGCTGGTTCAAGGCTAAAGAGTCGAATTGTAGCAGAACAATCTATAACTAAGTGGGCACAAGTGATTGAACAACTTGAGGATCAAGTGTCTGCAGTTATGCAAGAAGAGAGGGAAGAGATGGCACTAAGAAAAGCTGAAATGGAAGCAAATAAGGCAGAGAATATGATTGCCCACAGGGATGAGATTTATTCACGTCCTAAAAGGACATGGTTTGTCACAGAAAAGGAGAAAAAGCTAGTCCAAAAGGCAGCAAAGGAGAATGCAGCAGCCAAAGAAAATGGTTCTCAGAGTAAGGTAATGAGTGCCGAACAAGCAGAAGACCTGAAGATGAAGGAAAAGAGGAAGCGAGAACGAGAGAAAAATCTGCCGAGGAAGAAAAGAAGGAAGTTGGAGGCTGCTCGAGAGCAATTAGAAGATGAAGATGACTTGGATGATGGCAAAGACAAATCAAAGAAAGAGAAATCTGGAATTTCCTTAGTTGATCTTGCTTATCGTCGTGCAAAAGCAGTCAAGGCTGTGAACAAGGCAGTTGATGCTGGCAAGATTGTTAGGAAGGCCGGAAATAAACCAAAACCGAAAAGCAGAGCATCTGAATCAAGGACAGAAGAAATGCAGGATATTTTTCAAAATGATACGAGTGAGAGAAAACAAAGAAAACCACTTCATGCCGGTGGAAAGAAGAAGTCCTCATTCAAGAGCAAGTCACGGTACAAGAGGAGGTAAACACTTGCAAAAAACCATGACAATCATCTGGAAATCAAGTTACTGAAACGAGGTAGACTCATCAAACATGACTACCCCATCGTAACAAAGGATGGATTATGTAAACACTTACTCGAGATCTCACTTATCAGATTCCCCCGTGGAAGACAATTTAGTCTGAAGAATTCGCCCCGACTTGTACCAAGACAAGTAGCTTCTTAGAGTGTTGCTGATATTGAGCTTGTAGCTTTATTTTAAGAGTAGGTCCCCAGTTCTTAGTTTCAGTTTTGCAGAGAGTGTATTTTATCTCATTAGTATTTGTTTTGTTTAAGACTGAGTACTCGATGCATCTGTACATGTATTCGATTTTGACAAATATTTACGATATTG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc04g081580.2.1 | SL2.50ch04:65525133..65531140 | 745 | + | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc04g081580.2 | SL2.50ch04:65525073..65531509 | 6,437 | + | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc04g081580.2.1.1 | SL2.50ch04:65525073..65525448 | 376 | + | n/a |
| exon | exon:Solyc04g081580.2.1.10 | SL2.50ch04:65528109..65528171 | 63 | + | 1 |
| exon | exon:Solyc04g081580.2.1.11 | SL2.50ch04:65528355..65528416 | 62 | + | n/a |
| exon | exon:Solyc04g081580.2.1.12 | SL2.50ch04:65528652..65528748 | 97 | + | n/a |
| exon | exon:Solyc04g081580.2.1.13 | SL2.50ch04:65529493..65529611 | 119 | + | 1 |
| exon | exon:Solyc04g081580.2.1.14 | SL2.50ch04:65529693..65529735 | 43 | + | n/a |
| exon | exon:Solyc04g081580.2.1.15 | SL2.50ch04:65529890..65529991 | 102 | + | 1 |
| exon | exon:Solyc04g081580.2.1.16 | SL2.50ch04:65530230..65530331 | 102 | + | n/a |
| exon | exon:Solyc04g081580.2.1.17 | SL2.50ch04:65530426..65530503 | 78 | + | n/a |
| exon | exon:Solyc04g081580.2.1.18 | SL2.50ch04:65530677..65530948 | 272 | + | n/a |
| exon | exon:Solyc04g081580.2.1.19 | SL2.50ch04:65531125..65531509 | 385 | + | n/a |
| exon | exon:Solyc04g081580.2.1.2 | SL2.50ch04:65525605..65525790 | 186 | + | n/a |
| exon | exon:Solyc04g081580.2.1.3 | SL2.50ch04:65525884..65525952 | 69 | + | n/a |
| exon | exon:Solyc04g081580.2.1.4 | SL2.50ch04:65526057..65526163 | 107 | + | n/a |
| exon | exon:Solyc04g081580.2.1.5 | SL2.50ch04:65526651..65526732 | 82 | + | n/a |
| exon | exon:Solyc04g081580.2.1.6 | SL2.50ch04:65526833..65527006 | 174 | + | 1 |
| exon | exon:Solyc04g081580.2.1.7 | SL2.50ch04:65527350..65527498 | 149 | + | n/a |
| exon | exon:Solyc04g081580.2.1.8 | SL2.50ch04:65527612..65527707 | 96 | + | n/a |
| exon | exon:Solyc04g081580.2.1.9 | SL2.50ch04:65527926..65528028 | 103 | + | 1 |
| intron | intron:Solyc04g081580.2.1.1 | SL2.50ch04:65525449..65525604 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.10 | SL2.50ch04:65528172..65528354 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.11 | SL2.50ch04:65528417..65528651 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.12 | SL2.50ch04:65528749..65529492 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.13 | SL2.50ch04:65529612..65529692 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.14 | SL2.50ch04:65529736..65529889 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.15 | SL2.50ch04:65529992..65530229 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.16 | SL2.50ch04:65530332..65530425 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.17 | SL2.50ch04:65530504..65530676 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.18 | SL2.50ch04:65530949..65531124 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.2 | SL2.50ch04:65525791..65525883 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.3 | SL2.50ch04:65525953..65526056 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.4 | SL2.50ch04:65526164..65526650 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.5 | SL2.50ch04:65526733..65526832 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.6 | SL2.50ch04:65527007..65527349 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.7 | SL2.50ch04:65527499..65527611 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.8 | SL2.50ch04:65527708..65527925 | n/a | + | n/a |
| intron | intron:Solyc04g081580.2.1.9 | SL2.50ch04:65528029..65528108 | n/a | + | n/a |
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