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Solanum lycopersicum mRNA Solyc04g081580.2.1

mRNA details  
Name
Solyc04g081580.2.1
Type
mRNA
Length
2,665
Organism
Solanum lycopersicum
Description
ATP dependent RNA helicase (AHRD V1 **** B3LTF9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Location(s)
SL2.50ch04:65525073..65531509
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0005524
Length
6437
Nb exon
19
Sifter term
GO:0004004
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc04g081580.2.1 ATP dependent RNA helicase (AHRD V1 **** B3LTF9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

CCCTGCAACTCAATGCACAGATTCTTAAACCCTCACAAAATCAGCAGTCATCCAGGTATCAATGGCTACCGATTTCTCGTTTGAACAACCCAGCGATGAAGAAGTTGAATATGAGGAGAATGATGACAGTGAAGAAGAAGAACATGAAGTGGATGAAGATAATGAAGATGCCGACCCCAAACCTCGAACGAATAAGAAGCCGCAATCTCCATGGGACTTCTCTTCTTACTCTGAATCCGTTGCTGATGAACACAGCCACCGTAGAACAACTTCAATTGATTTCAAAATATCTAAGGCTCGTCAACAACTCTCTGCTCCTATAGCTAAACCAATCGAGGAAGATTCCGATTCCGACGATTCAGAACCTCACCGCCAGGAAGAGTACAGACCCGACGATGAAGATGGAGATGATGACGTAGATACGCATGTTGAAAAGAAACCATTTTTCGCCTCATCAGAAGGAGTTACATTTCATGCAAATTCGTTTATTGAGCTCCATATCTCTAGGCCGTTGCTTCGGGCTTGTGAAGCATTGGGTTACAGTAAGCCTACCCCAATTCAGGCGGCTTGCATTCCACTGGCTTTAACCGGTCGAGATATATGCGGTAGTGCTATAACAGGATCTGGAAAGACAGCTGCCTTTGCCTTACCGACACTCGAGAGACTGTTGTACCGTCCAAAAAATAGGCCTGCAATTAGGGTTCTTATTCTTACTCCAACAAGAGAGTTGGCTGTTCAGGTTCATAGTATGATAGGTAAACTTGCCCAGTTTATGCCAGATATCAGATGTTGTTTGGTTGTTGGTGGTCTGTCAACCAAGGTGCAAGAGGCAGCCTTGAGAACAATGCCTGATATTGTCGTGGCCACTCCAGGACGTATGATAGATCATCTACGGAACTCCATGTCAGTTGATTTGGATGATCTTGCAGTATTGATTCTTGATGAGGCCGATCGTCTACTGGAGCTGGGTTTCAGTGCTGAAATTCGTGAGCTGGTTAGATTGTGTCCGAAGCGGAGACAGACCATGTTGTTTTCTGCGACAATGACTGAGGAAGTTGATGAGCTCATCAATCTCTCACTGAATAAACCTTTGCGCCTGTCAGCTGATCCATCTACAAAACGGCCTGCAACATTGACTGAAGAGGTAGTTAGAATACGGCGCATGCGTGAAGGAAATCATGAAGCTGTTCTCCTTGCACTGTGCACCAAGACTTTCACTTCCAAAGTGATTGTTTTCAGTGGTACAAAGCAAGCAGCTCATCGGTTGAAAATTATATTTGGTTTACTTGGTTTCAAAGCAGCTGAGCTACATGGAAATCTTACGCAAGCCCAGCGTCTAGATGCTTTGGAACTTTTCAGAAGACAGGAAGTGGATTTTTTGATTGCAACCGATGTTGCAGCTCGTGGACTTGACATTATTGGTGTTCAAACTGTTATAAATTTTGCGTGCCCACGTGATCTTACTAGTTACGTTCATCGAGTGGGTCGGACAGCTAGAGCTGGTAGAGAAGGTTATGCCGTTACATTTGTCACAGATAATGATAGGTCTCTTCTAAAAGCCATTGTTAAACGAGCTGGTTCAAGGCTAAAGAGTCGAATTGTAGCAGAACAATCTATAACTAAGTGGGCACAAGTGATTGAACAACTTGAGGATCAAGTGTCTGCAGTTATGCAAGAAGAGAGGGAAGAGATGGCACTAAGAAAAGCTGAAATGGAAGCAAATAAGGCAGAGAATATGATTGCCCACAGGGATGAGATTTATTCACGTCCTAAAAGGACATGGTTTGTCACAGAAAAGGAGAAAAAGCTAGTCCAAAAGGCAGCAAAGGAGAATGCAGCAGCCAAAGAAAATGGTTCTCAGAGTAAGGTAATGAGTGCCGAACAAGCAGAAGACCTGAAGATGAAGGAAAAGAGGAAGCGAGAACGAGAGAAAAATCTGCCGAGGAAGAAAAGAAGGAAGTTGGAGGCTGCTCGAGAGCAATTAGAAGATGAAGATGACTTGGATGATGGCAAAGACAAATCAAAGAAAGAGAAATCTGGAATTTCCTTAGTTGATCTTGCTTATCGTCGTGCAAAAGCAGTCAAGGCTGTGAACAAGGCAGTTGATGCTGGCAAGATTGTTAGGAAGGCCGGAAATAAACCAAAACCGAAAAGCAGAGCATCTGAATCAAGGACAGAAGAAATGCAGGATATTTTTCAAAATGATACGAGTGAGAGAAAACAAAGAAAACCACTTCATGCCGGTGGAAAGAAGAAGTCCTCATTCAAGAGCAAGTCACGGTACAAGAGGAGGTAAACACTTGCAAAAAACCATGACAATCATCTGGAAATCAAGTTACTGAAACGAGGTAGACTCATCAAACATGACTACCCCATCGTAACAAAGGATGGATTATGTAAACACTTACTCGAGATCTCACTTATCAGATTCCCCCGTGGAAGACAATTTAGTCTGAAGAATTCGCCCCGACTTGTACCAAGACAAGTAGCTTCTTAGAGTGTTGCTGATATTGAGCTTGTAGCTTTATTTTAAGAGTAGGTCCCCAGTTCTTAGTTTCAGTTTTGCAGAGAGTGTATTTTATCTCATTAGTATTTGTTTTGTTTAAGACTGAGTACTCGATGCATCTGTACATGTATTCGATTTTGACAAATATTTACGATATTG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc04g081580.2.1SL2.50ch04:65525133..65531140745+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc04g081580.2SL2.50ch04:65525073..655315096,437+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc04g081580.2.1.1SL2.50ch04:65525073..65525448376+n/a
exonexon:Solyc04g081580.2.1.10SL2.50ch04:65528109..6552817163+1
exonexon:Solyc04g081580.2.1.11SL2.50ch04:65528355..6552841662+n/a
exonexon:Solyc04g081580.2.1.12SL2.50ch04:65528652..6552874897+n/a
exonexon:Solyc04g081580.2.1.13SL2.50ch04:65529493..65529611119+1
exonexon:Solyc04g081580.2.1.14SL2.50ch04:65529693..6552973543+n/a
exonexon:Solyc04g081580.2.1.15SL2.50ch04:65529890..65529991102+1
exonexon:Solyc04g081580.2.1.16SL2.50ch04:65530230..65530331102+n/a
exonexon:Solyc04g081580.2.1.17SL2.50ch04:65530426..6553050378+n/a
exonexon:Solyc04g081580.2.1.18SL2.50ch04:65530677..65530948272+n/a
exonexon:Solyc04g081580.2.1.19SL2.50ch04:65531125..65531509385+n/a
exonexon:Solyc04g081580.2.1.2SL2.50ch04:65525605..65525790186+n/a
exonexon:Solyc04g081580.2.1.3SL2.50ch04:65525884..6552595269+n/a
exonexon:Solyc04g081580.2.1.4SL2.50ch04:65526057..65526163107+n/a
exonexon:Solyc04g081580.2.1.5SL2.50ch04:65526651..6552673282+n/a
exonexon:Solyc04g081580.2.1.6SL2.50ch04:65526833..65527006174+1
exonexon:Solyc04g081580.2.1.7SL2.50ch04:65527350..65527498149+n/a
exonexon:Solyc04g081580.2.1.8SL2.50ch04:65527612..6552770796+n/a
exonexon:Solyc04g081580.2.1.9SL2.50ch04:65527926..65528028103+1
intronintron:Solyc04g081580.2.1.1SL2.50ch04:65525449..65525604n/a+n/a
intronintron:Solyc04g081580.2.1.10SL2.50ch04:65528172..65528354n/a+n/a
intronintron:Solyc04g081580.2.1.11SL2.50ch04:65528417..65528651n/a+n/a
intronintron:Solyc04g081580.2.1.12SL2.50ch04:65528749..65529492n/a+n/a
intronintron:Solyc04g081580.2.1.13SL2.50ch04:65529612..65529692n/a+n/a
intronintron:Solyc04g081580.2.1.14SL2.50ch04:65529736..65529889n/a+n/a
intronintron:Solyc04g081580.2.1.15SL2.50ch04:65529992..65530229n/a+n/a
intronintron:Solyc04g081580.2.1.16SL2.50ch04:65530332..65530425n/a+n/a
intronintron:Solyc04g081580.2.1.17SL2.50ch04:65530504..65530676n/a+n/a
intronintron:Solyc04g081580.2.1.18SL2.50ch04:65530949..65531124n/a+n/a
intronintron:Solyc04g081580.2.1.2SL2.50ch04:65525791..65525883n/a+n/a
intronintron:Solyc04g081580.2.1.3SL2.50ch04:65525953..65526056n/a+n/a
intronintron:Solyc04g081580.2.1.4SL2.50ch04:65526164..65526650n/a+n/a
intronintron:Solyc04g081580.2.1.5SL2.50ch04:65526733..65526832n/a+n/a
intronintron:Solyc04g081580.2.1.6SL2.50ch04:65527007..65527349n/a+n/a
intronintron:Solyc04g081580.2.1.7SL2.50ch04:65527499..65527611n/a+n/a
intronintron:Solyc04g081580.2.1.8SL2.50ch04:65527708..65527925n/a+n/a
intronintron:Solyc04g081580.2.1.9SL2.50ch04:65528029..65528108n/a+n/a
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http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17810106%2Fdetails feature 17810106
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