Solanum lycopersicum mRNA Solyc04g082130.2.1
 mRNA details
|
| Name | Type |
Length
1,905
|
Organism |
|
Description
THUMP domain protein (AHRD V1 *--- D7EAV4_METEZ)
|
|
Location(s)
SL2.50ch04:65908985..65916989
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0005840
- Length
- 8005
- Nb exon
- 15
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc04g082130.2.1 THUMP domain protein (AHRD V1 *--- D7EAV4_METEZ)
AATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGGGCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTGGTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTGGGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAGAAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTGAAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTGGATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCTTCTACTGCATCTGTGTACCCAGGCTGGGACATATATCAAGGAATTTGTTCACGGGGATTTTGGTCGCACTCAACCTAGTATCGGTTCAATTCTTGGTTGCAGAACAGAGATACTGCAACTCGATGTTACGGATGTGAAAATGGATTGCTTTCAGGAAGAATGAAAGAACTATAATATTCTTGGACCCAGGAATTTGCATTTGAACATTAGTTTTACATCCCTATTTTGGTGTAACATTTTGTATGCATCATAAGATCAAATTTTCTACTATTTAATATGTATTATGAAACATCTGCAAAATCAGTTGATCATAATACTTAATTTTGATGCTATGACATTTTTATGGC
AATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGGGCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTGGTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTGGGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAGAAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTGAAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTGGATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCTTCTACTGCATCTGTGTACCCAGGCTGGGACATATATCAAGGAATTTGTTCACGGGGATTTTGGTCGCACTCAACCTAGTATCGGTTCAATTCTTGGTTGCAGAACAGAGATACTGCAACTCGATGTTACGGATGTGAAAATGGATTGCTTTCAGGAAGAATGAAAGAACTATAATATTCTTGGACCCAGGAATTTGCATTTGAACATTAGTTTTACATCCCTATTTTGGTGTAACATTTTGTATGCATCATAAGATCAAATTTTCTACTATTTAATATGTATTATGAAACATCTGCAAAATCAGTTGATCATAATACTTAATTTTGATGCTATGACATTTTTATGGC
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc04g082130.2.1 | SL2.50ch04:65909168..65916942 | 558 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc04g082130.2 | SL2.50ch04:65908985..65916989 | 8,005 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc04g082130.2.1.1 | SL2.50ch04:65916793..65916989 | 197 | - | n/a |
| exon | exon:Solyc04g082130.2.1.10 | SL2.50ch04:65911797..65911871 | 75 | - | n/a |
| exon | exon:Solyc04g082130.2.1.11 | SL2.50ch04:65911602..65911682 | 81 | - | n/a |
| exon | exon:Solyc04g082130.2.1.12 | SL2.50ch04:65910732..65910805 | 74 | - | 1 |
| exon | exon:Solyc04g082130.2.1.13 | SL2.50ch04:65910589..65910649 | 61 | - | n/a |
| exon | exon:Solyc04g082130.2.1.14 | SL2.50ch04:65910378..65910433 | 56 | - | 1 |
| exon | exon:Solyc04g082130.2.1.15 | SL2.50ch04:65908985..65909253 | 269 | - | n/a |
| exon | exon:Solyc04g082130.2.1.2 | SL2.50ch04:65915029..65915387 | 359 | - | 1 |
| exon | exon:Solyc04g082130.2.1.3 | SL2.50ch04:65914687..65914807 | 121 | - | n/a |
| exon | exon:Solyc04g082130.2.1.4 | SL2.50ch04:65914311..65914425 | 115 | - | 2 |
| exon | exon:Solyc04g082130.2.1.5 | SL2.50ch04:65913498..65913652 | 155 | - | n/a |
| exon | exon:Solyc04g082130.2.1.6 | SL2.50ch04:65913314..65913385 | 72 | - | n/a |
| exon | exon:Solyc04g082130.2.1.7 | SL2.50ch04:65912352..65912420 | 69 | - | n/a |
| exon | exon:Solyc04g082130.2.1.8 | SL2.50ch04:65912183..65912263 | 81 | - | n/a |
| exon | exon:Solyc04g082130.2.1.9 | SL2.50ch04:65911984..65912103 | 120 | - | n/a |
| intron | intron:Solyc04g082130.2.1.10 | SL2.50ch04:65911872..65911983 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.11 | SL2.50ch04:65911683..65911796 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.12 | SL2.50ch04:65910806..65911601 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.13 | SL2.50ch04:65910650..65910731 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.14 | SL2.50ch04:65910434..65910588 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.15 | SL2.50ch04:65909254..65910377 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.2 | SL2.50ch04:65915388..65916792 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.3 | SL2.50ch04:65914808..65915028 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.4 | SL2.50ch04:65914426..65914686 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.5 | SL2.50ch04:65913653..65914310 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.6 | SL2.50ch04:65913386..65913497 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.7 | SL2.50ch04:65912421..65913313 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.8 | SL2.50ch04:65912264..65912351 | n/a | - | n/a |
| intron | intron:Solyc04g082130.2.1.9 | SL2.50ch04:65912104..65912182 | n/a | - | n/a |
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