Solanum lycopersicum mRNA Solyc05g005300.2.1

mRNA details  
Name
Solyc05g005300.2.1
Type
mRNA
Length
1,510
Organism
Solanum lycopersicum
Description
BHLH transcription factor (AHRD V1 ***- Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location(s)
SL2.50ch05:240253..242750
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0045449
Length
2498
Nb exon
8
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g005300.2.1 BHLH transcription factor (AHRD V1 ***- Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding

GACTTGTCTTGTTTTTAGTATTCAAATTTCATGAAAATAACTCTGACTTACTATATTACTCATGGAAAAAGCATTAGAATGGTTAAGACCACTTGTTGATTCCAAAAATTGGGAATATTGTGTTGTTTGGAAGTTTGGTGATGACCCTTCAAGGTTTATAGAATGGATGGGGTGTTGCTGTTCTGGTGCAAATGGAGTTGATGTCAATGTTAAGAGAGAAAATGGAGGGAAACAGACATTTAGTTCTCTGTGTAGAGATATTCAAGTGCAGCATCCTATTAGAACAAAGGCTTGTGAGGCTTTAGCTCATTTTCCTCATTCTATTTCTCTTTATTCAGGGATTCAGGCAGAGGTTGTAACATCAAATGAACCAAAGTGGATTAATCATGCTGAGATTTCCAATTCAAATTTGTCACATGAATTAAAGGGTACCCTCGTATTGATCCCCGTTGCTGGTGGATTGGTTGAGCTTTACAATTCAAAGATGATATATAAAGATCAAAAGACGATTAATTTCATCATCAATCGGTTCAAACTTGGTTCAGAAGAAGCCAATAGTTCCGTAGCACAGAAAGAAGATCAAGTTCTTGATTTCTTTCCCTATGAGAAATCAAACTTCTGTGCTCCTCTCCTGCAATATGCCACAAGTTTTCCTTCAAGTGCACCTCATATTTCTCAAGTATCTGAGTCTAGTGCTAATCCCAGCATTCAAGGATCATCGACCGGTTCCATCCCTTCAAATGAACTTACATTGTGTCATTCACCTCCTGACCATTTATCGCGAAATGTACCATTAAGTCAATCTACTGAAGGGTATTTTGAGCACACAGAGCTTCAGTGCAGTGGAAACTTATCAAGAATGGAAGACACTATTTTTCCTTGGAAACAAGAAAACTATATAGTTGCAGGAGATATGTTCAGTATGGGTAAGAAAAGGCAAAAAGGACCTTATCAGTCGAAGAATCTTGTCACGGAGAGAAAACGAAGGAACAGAATCAAAGACGGTCTTTTTACACTTCGAGCTTTAGTTCCCAACATCACTAAGATGGACAAAGTCGCAATACTAGGAGACTCGATTGACTATATAAATGAACTGCAAGAAAAAGTGAAGTTATACAAAATTGAGCTCAACAAAATAGAAGCGGAAGTTACCAACAATGAGAGTACTCCTGAAATGGTCCTATCAGACATGACTGAAATGTCCAAAGTTACCGGACAAACAAATGAGAAAACACAAATTTCAGTTAATACAACTGATAGGACGAGAATGGAGGTGGAAGTGAATCAAATTGGTGCAAGAGAGTTCTTGTTGAAGGTCTCTGGATCACGTAAACCTGGTGGATTTACGCAGTTGATGGAGGCCATGAATTACTTAGGACTTGAGCTAGTAAATGTGAGTTGTACCACGTCTGGAGGGGAGATCGTGAGCGTTTACATAGTAGAGGCAAATGTAGACAGATTTATTGATGCACAGAAACTGAGATCTTCACTAATTGAGCTAACAAGTTGA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g005300.2.1SL2.50ch05:240252..242689483-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g005300.2SL2.50ch05:240253..2427502,498-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g005300.2.1.1SL2.50ch05:242598..242750153-n/a
exonexon:Solyc05g005300.2.1.2SL2.50ch05:242191..242376186-1
exonexon:Solyc05g005300.2.1.3SL2.50ch05:241936..24201479-1
exonexon:Solyc05g005300.2.1.4SL2.50ch05:241777..24184569-n/a
exonexon:Solyc05g005300.2.1.5SL2.50ch05:241050..241607558-n/a
exonexon:Solyc05g005300.2.1.6SL2.50ch05:240738..240965228-n/a
exonexon:Solyc05g005300.2.1.7SL2.50ch05:240483..240653171-n/a
exonexon:Solyc05g005300.2.1.8SL2.50ch05:240253..24031866-n/a
intronintron:Solyc05g005300.2.1.2SL2.50ch05:242377..242597n/a-n/a
intronintron:Solyc05g005300.2.1.3SL2.50ch05:242015..242190n/a-n/a
intronintron:Solyc05g005300.2.1.4SL2.50ch05:241846..241935n/a-n/a
intronintron:Solyc05g005300.2.1.5SL2.50ch05:241608..241776n/a-n/a
intronintron:Solyc05g005300.2.1.6SL2.50ch05:240966..241049n/a-n/a
intronintron:Solyc05g005300.2.1.7SL2.50ch05:240654..240737n/a-n/a
intronintron:Solyc05g005300.2.1.8SL2.50ch05:240319..240482n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17812391%2Fdetails feature 17812391
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