Solanum lycopersicum mRNA Solyc05g006650.2.1

mRNA details  
Name
Solyc05g006650.2.1
Type
mRNA
Length
1,413
Organism
Solanum lycopersicum
Description
Transcription factor (AHRD V1 **** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location(s)
SL2.50ch05:1311134..1316254
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0045449
Length
5121
Nb exon
6
Sifter term
GO:0003700
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g006650.2.1 Transcription factor (AHRD V1 **** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding

AATAACGTATAGACAAAATAAAAGCTGTAACTGGACCCTCCGAAAATACCTTATTCAAAGTCATTTCTTTTCAACTGCACAAAGAGTCTCCCTCTTCTTCTTCTTCTCTCTCTCTAATGGTGGTGGTCGCTATTATACGCCAGTAGGTACAGTACGCACCATCAACTTCCATTTTTGTACACACAGAGCTTCTATATATATCTTCTCTCATTCACATTTCCTACGTGAATGCCTAATAATTCACCATTCGCTTCGGATTTGGATCGGGTATTGAAATGGATCCACAAGCTTCCATGATGAACCACGCCGGAGGATTTCAGTCTCCGCCGTTTAATTTATCTGAGATCTGGCAGTTTCCGATCAATGCAGGTGAAGGTGAGACGCCGTATAGTTTTCCGTTGTCTACGGCGGCTGCGCCGCAGAATGTGAGTGATGATGTTCGGAATAATGATCCTATGGTTCTAGACCGGAGAACTAATAATTACAGCGGTGGCGGCGGTGGTGGTGCAGCTAGGAAGCGAAACGAGGATGATGAATCAGCTAAAGGAGTTTCCACTAGCGGCAATGGCTTGACTGAATCTGCTAGTAAGCGGATGAAGGTTACAAGATCAAATGAGAATTGCGAAGCTAGAGGTGACGGGGAAGGGAATTCAGTGAAATCTGCAGAACAACCTGCAAAGCCTGCTGAACCGCCAAAAGATTACATTCACGTGCGGGCAAGGAGGGGTCAAGCTACTGATAGTCACAGTCTAGCAGAAAGAGCTAGGAGAGAGAAGATAAGTGAGAGGATGAAAGTCCTCCAAGATATAGTCCCTGGTTGTAATAAGGTTATTGGCAAAGCTCTTGTTCTTGATGAGATAATAAATTATATTCAATCATTACAACACCAGGTTGAGTTCTTATCAATGAAGCTTGAAGCAGTTAATTCAAAAATGCCAAGCATAGAGGGATATCCATCTAAAGATTTCGGACAGCAGCCATTTGATACAAATGCTATGGCATTCAGTTCACAAGCTACAAGGGAATATACCAGGGGAACATCACCAGATTGGTTGCATATGCAGCTTGGTGGAGGCTTTGAAAGAACAACATAAATTTGCATCAGAAGGTTAATAATAAGTTCATTGGAAGGTTCCCTCTTTTGGTGATTGCCAGAACACAAGACCAGTCCAGGTTTCTTTGAAAGCTTATATCCAGTATCTTTATCAAGCACAAAATTGTTGAATGTCTAGTACAGCTGATAAACAGACAACCACGTTTTCCACTTCGTTCGTCTATCGTGTTATACTTGTGGCAGGCACCATATAAGTATTCTTGTGAAAGTGCTTGTTTAATAATAGGTAAAGAATTGGGTGTATTAGTATGCTGAAGTTGTAGCTAAATAAAGTGGTCTGTCCCGTCCTTAAAACCATT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g006650.2.1SL2.50ch05:1311452..1315979273-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g006650.2SL2.50ch05:1311134..13162545,121-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g006650.2.1.1SL2.50ch05:1315683..1316254572-n/a
exonexon:Solyc05g006650.2.1.2SL2.50ch05:1314670..1314858189-n/a
exonexon:Solyc05g006650.2.1.3SL2.50ch05:1314470..131453566-n/a
exonexon:Solyc05g006650.2.1.4SL2.50ch05:1312615..131268369-n/a
exonexon:Solyc05g006650.2.1.5SL2.50ch05:1312429..131249769-n/a
exonexon:Solyc05g006650.2.1.6SL2.50ch05:1311134..1311581448-n/a
intronintron:Solyc05g006650.2.1.2SL2.50ch05:1314859..1315682n/a-n/a
intronintron:Solyc05g006650.2.1.3SL2.50ch05:1314536..1314669n/a-n/a
intronintron:Solyc05g006650.2.1.4SL2.50ch05:1312684..1314469n/a-n/a
intronintron:Solyc05g006650.2.1.5SL2.50ch05:1312498..1312614n/a-n/a
intronintron:Solyc05g006650.2.1.6SL2.50ch05:1311582..1312428n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17813913%2Fdetails feature 17813913
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