Solanum lycopersicum mRNA Solyc05g007160.2.1
 mRNA details
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| Name | Type |
Length
1,905
|
Organism |
|
Description
Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor
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|
Location(s)
SL2.50ch05:1752928..1757049
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0003677
- GO:0045449
- Length
- 4122
- Nb exon
- 12
- Sifter term
- GO:0003700
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc05g007160.2.1 Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor
GGTTCTTTTTATATAACATTCACCCAAAAGGGTGTTTTTTTTTTTTATAATTTTACTATAGCATGCTTGTGTTGAGGGAACAAAGAAGGAGGAAAATATGCAGAGTGGTATGAAGAAAAGGGTAACTACTAATTCTAGTAGTAATGGAAATAGTGTTGAAGCTGCTAAACCTAAAGAAAGACATATTGTTTCTTGGTCTCAAGAGGAGGATGATATACTAAGAGAGCAAATTCGAATTCATGGAACAGACAATTGGACGATCATCGCATCGAAGTTCAAGGATAAAACAACAAGGCAATGTAGAAGAAGATGGTTTACTTATTTGAACTCTGATTTCAAGAAAGGAGGGTGGTCACCTGAAGAAGATATGCTTTTATGTGAGGCTCAAAAGATTTTTGGTAACAGATGGACTGAAATTGCCAAGGTGGTATCAGGCAGGACGGATAATGCTGTGAAGAATCGGTTCACTACACTGTGCAAAAAGAGAGCAAAGCATGAAGCTTTGGCTAAAGAAAACAGCAATTCATTCATTAACCTGAATAACAAGAGGGTTATATTTCCAGATGGTATCAATGTTGACAACATAGCTGAAGCTGCTGGTCCTATTAAAAAGCTGAGGCGGAGCGACATTTCAGATGTCCTTCAAATTGGTAACAGCAGAGAAAAATCTGATGGTGATTGTGGAACTACTGCACATCCATTGCTGAGACATCCATTTGCGGTACTAGCTCAAAACCTGCATAACACTGGGGAAAGTTTGGTATCTCATCAGACGACAACTGAAAATGCTAGTGACAACAGAACTCAAGGAACATTCCTTAAACAAGATGATCCAAAGAAACAGGCTTTGATGCAACAAGCAGAGCTGCTAAGCTCACTAGCAATGAAAGTTAATACAGAAAATACAGATCAAAGCCTTGAAAGTGCTTGGAAGATACTCCAAGATTTTCTTCAACAAACAAAGGATGGTGATACACTCAAGTTCCAGCTACCTGAGATGAATTTTGAACCTGATGATTATAAGAACCTGATAGCAGATTCAAGAAGCAGTAATGAAGGCAGTCGACCATCTTGGAGGCAACCTGCTTTATCTGAAGATTCTGCTGGCAGCTCTGAGTATAGTACGGGATCAACTTTGCTATGCCATGCACTGGCTGATAAAACAGAAGAAAGCCAAGCTGAGGTGTGTGCACAGCATCAGGATATTGAATCTGAATTACGAACTTCTCAGATGAGTGATCAAGGGGGGCTTCATGAATTAGAAAATGGAACCTCCTGCCACATAGCAACCACTCGAGATACTTTGCCAGTTTGTGATGAAGAAAAAGCAAATAATGGACCAGCTACAGCTGAATGTGACTTTCTGAATACAGATTTCAGTTCTCCTCTTCAAGTTACTCCACTGTTCAGATCTTTAGCTGCAGAAATTCCCACTCCAAAGTTTTCAGAAAGTGAGAGGCAGTTCCTATGGAAAACACTTGGAGTGGAGTCCACATCCATGCATCCAGGCACAAATCTTTCCCAACCTCCATCGTGCAAAAGAGCCCTCCTCAACAGTCTATAACCAACTTTACTGATCAATCCTTACAAAGATTCTGCGGGGAGCAGTATCACCATAACTTTGATCAACAGTTCTTCTTATATGTAGTTTACTCAATTTTTGGAGTTCTTTTTGTTTGGATTGCAGTCTCTATGACCTATGTTTTTTTCAAGAGGCCTTGGAAGATCTGGTCTGCACCCTAGAATGCATCGGAGGCATTCTAGCTTTTTCTCTGGAGATCTGACAGATGTCTGCATCCGTTTTTGGAGTTTCCAACCTAATACTCACCAGTATCTAGTGTGTTATTTAATTGTTTCTCATTCTTTGGTGTGTTGTTGTGGAACTCAAATGGGGGTATTTGATGT
GGTTCTTTTTATATAACATTCACCCAAAAGGGTGTTTTTTTTTTTTATAATTTTACTATAGCATGCTTGTGTTGAGGGAACAAAGAAGGAGGAAAATATGCAGAGTGGTATGAAGAAAAGGGTAACTACTAATTCTAGTAGTAATGGAAATAGTGTTGAAGCTGCTAAACCTAAAGAAAGACATATTGTTTCTTGGTCTCAAGAGGAGGATGATATACTAAGAGAGCAAATTCGAATTCATGGAACAGACAATTGGACGATCATCGCATCGAAGTTCAAGGATAAAACAACAAGGCAATGTAGAAGAAGATGGTTTACTTATTTGAACTCTGATTTCAAGAAAGGAGGGTGGTCACCTGAAGAAGATATGCTTTTATGTGAGGCTCAAAAGATTTTTGGTAACAGATGGACTGAAATTGCCAAGGTGGTATCAGGCAGGACGGATAATGCTGTGAAGAATCGGTTCACTACACTGTGCAAAAAGAGAGCAAAGCATGAAGCTTTGGCTAAAGAAAACAGCAATTCATTCATTAACCTGAATAACAAGAGGGTTATATTTCCAGATGGTATCAATGTTGACAACATAGCTGAAGCTGCTGGTCCTATTAAAAAGCTGAGGCGGAGCGACATTTCAGATGTCCTTCAAATTGGTAACAGCAGAGAAAAATCTGATGGTGATTGTGGAACTACTGCACATCCATTGCTGAGACATCCATTTGCGGTACTAGCTCAAAACCTGCATAACACTGGGGAAAGTTTGGTATCTCATCAGACGACAACTGAAAATGCTAGTGACAACAGAACTCAAGGAACATTCCTTAAACAAGATGATCCAAAGAAACAGGCTTTGATGCAACAAGCAGAGCTGCTAAGCTCACTAGCAATGAAAGTTAATACAGAAAATACAGATCAAAGCCTTGAAAGTGCTTGGAAGATACTCCAAGATTTTCTTCAACAAACAAAGGATGGTGATACACTCAAGTTCCAGCTACCTGAGATGAATTTTGAACCTGATGATTATAAGAACCTGATAGCAGATTCAAGAAGCAGTAATGAAGGCAGTCGACCATCTTGGAGGCAACCTGCTTTATCTGAAGATTCTGCTGGCAGCTCTGAGTATAGTACGGGATCAACTTTGCTATGCCATGCACTGGCTGATAAAACAGAAGAAAGCCAAGCTGAGGTGTGTGCACAGCATCAGGATATTGAATCTGAATTACGAACTTCTCAGATGAGTGATCAAGGGGGGCTTCATGAATTAGAAAATGGAACCTCCTGCCACATAGCAACCACTCGAGATACTTTGCCAGTTTGTGATGAAGAAAAAGCAAATAATGGACCAGCTACAGCTGAATGTGACTTTCTGAATACAGATTTCAGTTCTCCTCTTCAAGTTACTCCACTGTTCAGATCTTTAGCTGCAGAAATTCCCACTCCAAAGTTTTCAGAAAGTGAGAGGCAGTTCCTATGGAAAACACTTGGAGTGGAGTCCACATCCATGCATCCAGGCACAAATCTTTCCCAACCTCCATCGTGCAAAAGAGCCCTCCTCAACAGTCTATAACCAACTTTACTGATCAATCCTTACAAAGATTCTGCGGGGAGCAGTATCACCATAACTTTGATCAACAGTTCTTCTTATATGTAGTTTACTCAATTTTTGGAGTTCTTTTTGTTTGGATTGCAGTCTCTATGACCTATGTTTTTTTCAAGAGGCCTTGGAAGATCTGGTCTGCACCCTAGAATGCATCGGAGGCATTCTAGCTTTTTCTCTGGAGATCTGACAGATGTCTGCATCCGTTTTTGGAGTTTCCAACCTAATACTCACCAGTATCTAGTGTGTTATTTAATTGTTTCTCATTCTTTGGTGTGTTGTTGTGGAACTCAAATGGGGGTATTTGATGT
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
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| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc05g007160.2.1 | SL2.50ch05:1753268..1756952 | 489 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc05g007160.2 | SL2.50ch05:1752928..1757049 | 4,122 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc05g007160.2.1.1 | SL2.50ch05:1756845..1757049 | 205 | - | n/a |
| exon | exon:Solyc05g007160.2.1.10 | SL2.50ch05:1754544..1754764 | 221 | - | 2 |
| exon | exon:Solyc05g007160.2.1.11 | SL2.50ch05:1754286..1754440 | 155 | - | n/a |
| exon | exon:Solyc05g007160.2.1.12 | SL2.50ch05:1752928..1753379 | 452 | - | n/a |
| exon | exon:Solyc05g007160.2.1.2 | SL2.50ch05:1756678..1756724 | 47 | - | 1 |
| exon | exon:Solyc05g007160.2.1.3 | SL2.50ch05:1756509..1756565 | 57 | - | 1 |
| exon | exon:Solyc05g007160.2.1.4 | SL2.50ch05:1756340..1756412 | 73 | - | n/a |
| exon | exon:Solyc05g007160.2.1.5 | SL2.50ch05:1756102..1756157 | 56 | - | 1 |
| exon | exon:Solyc05g007160.2.1.6 | SL2.50ch05:1755830..1756009 | 180 | - | 1 |
| exon | exon:Solyc05g007160.2.1.7 | SL2.50ch05:1755581..1755750 | 170 | - | 2 |
| exon | exon:Solyc05g007160.2.1.8 | SL2.50ch05:1755351..1755496 | 146 | - | n/a |
| exon | exon:Solyc05g007160.2.1.9 | SL2.50ch05:1754848..1754990 | 143 | - | 1 |
| intron | intron:Solyc05g007160.2.1.10 | SL2.50ch05:1754765..1754847 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.11 | SL2.50ch05:1754441..1754543 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.12 | SL2.50ch05:1753380..1754285 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.2 | SL2.50ch05:1756725..1756844 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.3 | SL2.50ch05:1756566..1756677 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.4 | SL2.50ch05:1756413..1756508 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.5 | SL2.50ch05:1756158..1756339 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.6 | SL2.50ch05:1756010..1756101 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.7 | SL2.50ch05:1755751..1755829 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.8 | SL2.50ch05:1755497..1755580 | n/a | - | n/a |
| intron | intron:Solyc05g007160.2.1.9 | SL2.50ch05:1754991..1755350 | n/a | - | n/a |
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