Solanum lycopersicum mRNA Solyc05g008080.1.1
 mRNA details
|
| Name | Type | Organism | |
|
Synonyms / aliases
mRNA:Solyc05g008080.1.1
|
Length
819
|
|
Description
Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin
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|
Location(s)
SL2.50ch05:2503662..2506273
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0016020
- GO:0016021
- Length
- 2612
- Sifter term
- GO:0015250
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc05g008080.1.1 Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin
ATGTCAACAAAAGATATAAGAGAAATAGAAGAAGGAAATTGTTCAAATTATACCAATAATGTTAGTGGAGATGATTCAAGTCTCTGTACTTCACCTGAAGTTGTCATTATTATTCAAAAGGTGATAGCAGAGGCGATAGGAACGTACTTTTTGATATTCGTAGGATGTGGTGCAGTGGCTGTGGATAAAACTTATGGTTCAGTAACATTTCCAGGAATATGTGTGGCATGGGGTTTAATTGTTATGGTCATGGTTTATTCTGTTGGACATATTTCTGGTGCACATTTTAATCCTGCAGTTACTATTGCCTTTGCACTCTTTAGACATTTCCCTGTCAAACAGGTGCCATTATACATAATGGCACAAATGGTTGGGGCAATTCTTGGAAGTGGAACATTGTACTTGTTGTTGGATTTGAAAACACAAGCATTTTTTGGAACAACACCAGTGGGAACAAATCTTCAATCTTTGATTCTTGAATTCATAATTTCTTACCTATTAATGTTTGTCATTTCTGGTGTTGCCACTGACAATAGATCAATTGGAGAGCTAGCAGGAATTGCTATTGGAATGACAATACTCCTAAATGTTTTGATTGCAGGGCCAGTATCAGGAGCATCAATGAACCCAGCAAGAAGTATTGGGCCAGCAATTGTGATGCATCATTATAAAGGGCTTTGGGTTTACATAATTGGGCCTATATTAGGAACAATATGTGGTGCTTTCACATATAACCTAATTAGGTTTACAGAAAAACCACTTAGAGAATTAACTCTTACTAAAACTTCAACATTTCTTAAGAGCATGTCAAGAAAATAA
ATGTCAACAAAAGATATAAGAGAAATAGAAGAAGGAAATTGTTCAAATTATACCAATAATGTTAGTGGAGATGATTCAAGTCTCTGTACTTCACCTGAAGTTGTCATTATTATTCAAAAGGTGATAGCAGAGGCGATAGGAACGTACTTTTTGATATTCGTAGGATGTGGTGCAGTGGCTGTGGATAAAACTTATGGTTCAGTAACATTTCCAGGAATATGTGTGGCATGGGGTTTAATTGTTATGGTCATGGTTTATTCTGTTGGACATATTTCTGGTGCACATTTTAATCCTGCAGTTACTATTGCCTTTGCACTCTTTAGACATTTCCCTGTCAAACAGGTGCCATTATACATAATGGCACAAATGGTTGGGGCAATTCTTGGAAGTGGAACATTGTACTTGTTGTTGGATTTGAAAACACAAGCATTTTTTGGAACAACACCAGTGGGAACAAATCTTCAATCTTTGATTCTTGAATTCATAATTTCTTACCTATTAATGTTTGTCATTTCTGGTGTTGCCACTGACAATAGATCAATTGGAGAGCTAGCAGGAATTGCTATTGGAATGACAATACTCCTAAATGTTTTGATTGCAGGGCCAGTATCAGGAGCATCAATGAACCCAGCAAGAAGTATTGGGCCAGCAATTGTGATGCATCATTATAAAGGGCTTTGGGTTTACATAATTGGGCCTATATTAGGAACAATATGTGGTGCTTTCACATATAACCTAATTAGGTTTACAGAAAAACCACTTAGAGAATTAACTCTTACTAAAACTTCAACATTTCTTAAGAGCATGTCAAGAAAATAA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc05g008080.1.1 | SL2.50ch05:2503661..2506273 | 273 | + | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc05g008080.1 | SL2.50ch05:2503662..2506273 | 2,612 | + | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc05g008080.1.1.1 | SL2.50ch05:2503662..2503781 | 120 | + | n/a |
| exon | exon:Solyc05g008080.1.1.2 | SL2.50ch05:2503862..2504083 | 222 | + | n/a |
| exon | exon:Solyc05g008080.1.1.3 | SL2.50ch05:2504825..2505022 | 198 | + | n/a |
| exon | exon:Solyc05g008080.1.1.4 | SL2.50ch05:2505112..2505173 | 62 | + | n/a |
| exon | exon:Solyc05g008080.1.1.5 | SL2.50ch05:2506057..2506273 | 217 | + | 1 |
| intron | intron:Solyc05g008080.1.1.1 | SL2.50ch05:2503782..2503861 | n/a | + | n/a |
| intron | intron:Solyc05g008080.1.1.2 | SL2.50ch05:2504084..2504824 | n/a | + | n/a |
| intron | intron:Solyc05g008080.1.1.3 | SL2.50ch05:2505023..2505111 | n/a | + | n/a |
| intron | intron:Solyc05g008080.1.1.4 | SL2.50ch05:2505174..2506056 | n/a | + | n/a |
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