Notice: Due to a wide-spread power outage in the area, SGN was unavailable early on Sunday. We apologize for the inconvenience.

Solanum lycopersicum mRNA Solyc05g011810.2.1

mRNA details  
Name
Solyc05g011810.2.1
Type
mRNA
Length
1,317
Organism
Solanum lycopersicum
Description
BHLH transcription factor (AHRD V1 *-** B5AEK3_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location(s)
SL2.50ch05:5042653..5046761
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0045449
Length
4109
Nb exon
7
Sifter term
GO:0003700
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g011810.2.1 BHLH transcription factor (AHRD V1 *-** B5AEK3_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding

ATGAAATCTGGAAAGGGTCATCATGTGGAAGAAGAAGAGGATGAGTATGATTTTGGTTCTAATAGAGATGCCACACCTTCAAGTAATAGTACTAAAGATGGGAAGAACAGTGACAAGGCAAATGCAATTAGGTCGAAGCATTCAGTAACTGAGCAGCGCCGGAGGAGCAAGATCAATGAGAGATTTCAGATGTTGAGAAATTTGATACCCCATACTGATCAAAAACGAGATACCGCGTCATTCTTGTTCGAGGTAATTCAGTACGTACAGTATTTACAGGATACAGTACAGAAGTATGAAGGATCATATCAACCTTGGAGCTCGGAGCCTACAAAACTTATGCCATGGAGAAACACTCAGTGGCGCGCGCAGAGTTTTCCTGCAAACCCTCAAGCCTTGAACAATGGTACTGACGCTGGACCAACATATTCAGGAAGGTTTGATGAGAATCTCTTAACCGTCACTTCGTCAATGCAAGCCAATCAGCGGAATCCACTTGAATCTCATTCTGGGGGTGATGTTAAATCTATGGATCAAGGAAAGGAACTAGCTAGAACGGCAATTGCAACATCGATGCCTCTTCAGGCTAGTATGCCAGTCCCTTTTCAGAACGATAGTGCCTTCTCTGACTCACTACCTACACCTGCTTCTGATGAATGCCCTAGAACCACTAATGCTCTGAATGATCAGGAGTTTATGGTAGAAGGCGGCACAATTAACTTTTCGAATACTTACTCTCAAGGGTTACTGAATTCGTTGACACACGCGCTACAGGCTACTGGCCTTGATCTTTCACAGGCCAGTATATCGGTGCAGATTAATCTAGGGAAGCGAGCAAACAAGGAAAGGGCCTTGGGGCCATCTGTTGCTAAGGATACAGAAAATCCTCCACCTGCACCTGGCGATCAATTTTTGGAGTTTCGAGATACAAACAATGGTGAAGAGTTGAACCAAGCTCAAAAGAGGCTGAAGAAATAGATACAACTATATAGCATGGCAATACCAAGTCAAATCAACTCAAGTTGGCATCACCTTCGCGTTAATCAGTTTGAGTGTATATCCCGCATTTTTTTATCAGTACCAAATGTTGCTCATATGTTCATAGCAATGCCTTTTGATGTCTTTCCTTTCTTTTTCCTCTTTATTTTATTTTATTTTTATTTTTTTGAATCTTTACGGGTGATACCCTCTTCCTTGTCTGTAGTTAAACTCGAATTCTATATGTTCTGAGTTTGTAAAGTCTCGATCTTGATGTATCTTGTGTAAAAATTTCACAAACACATTTGGTGATCTCGATTGTGTAATGTAAACAGGCCA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g011810.2.1SL2.50ch05:5042652..5046422326+n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g011810.2SL2.50ch05:5042653..50467614,109+n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g011810.2.1.1SL2.50ch05:5042653..504274997+n/a
exonexon:Solyc05g011810.2.1.2SL2.50ch05:5042917..504300185+2
exonexon:Solyc05g011810.2.1.3SL2.50ch05:5043759..504382870+1
exonexon:Solyc05g011810.2.1.4SL2.50ch05:5043908..504400396+n/a
exonexon:Solyc05g011810.2.1.5SL2.50ch05:5045007..5045401395+n/a
exonexon:Solyc05g011810.2.1.6SL2.50ch05:5046078..5046207130+1
exonexon:Solyc05g011810.2.1.7SL2.50ch05:5046318..5046761444+n/a
intronintron:Solyc05g011810.2.1.1SL2.50ch05:5042750..5042916n/a+n/a
intronintron:Solyc05g011810.2.1.2SL2.50ch05:5043002..5043758n/a+n/a
intronintron:Solyc05g011810.2.1.3SL2.50ch05:5043829..5043907n/a+n/a
intronintron:Solyc05g011810.2.1.4SL2.50ch05:5044004..5045006n/a+n/a
intronintron:Solyc05g011810.2.1.5SL2.50ch05:5045402..5046077n/a+n/a
intronintron:Solyc05g011810.2.1.6SL2.50ch05:5046208..5046317n/a+n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17818212%2Fdetails feature 17818212
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)