Sol Genomics Network

Solanum lycopersicum gene Solyc05g013150.2

Name Solyc05g013150.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc05g013150	Length 3,402

Description

Set domain protein (AHRD V1 ***- C1EFC8_9CHLO); contains Interpro domain(s) IPR011192 Rubisco methyltransferase

Location(s)

SL2.50ch05:6235300..6238701

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3402

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc05g013150.2.1	SL2.50ch05:6235300..6238701	1,861	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc05g013150.2 SL2.50ch05:6238701..6235300 (sequence from reverse strand)
TACAACCATTTAATTATCATTTATCTTTTTTTTAGTCCTTTTTCATTCTGCAGCATTAAAGAACAAATGAGATAACATTTGTAGAACCAATTAAAGCTAGAGTGAAACATGGCTTCTGTTTTCTCTTCTTCTTTCTTCTGTCCACTCAAAACCACAAAATTAAGAATAAAGCTTCAAACTTTACAGAGTTCTCAAAAACCATTCTTGATAAGTTCACTTCAGTTAAGAGAACTTGACCCAAAAATCCCGCAACCTGTCCAAACATTCTGGAAGTGGCTATGTGATGAAGGAGTTGTATCAATAAAGACACCTGTAAAGCCAGGAATTGTAGCAGAGGGTTTAGGATTAGTTGCTAAGAGAGATATTTCAAAAGGGGAAACAGTTTTAGGAGTGCCTAAAAGGTTCTGGATAAACACAGATGCAGTTGCAGAATCTGAAATTGGGAATGTTTGTACTGGATTAGAACCTTGGATTTCTCTTGCTCTTTTCTTGTTGAGAGAGAAATGGAAAGATGATTCCAAGTGGAAATATTACATGGCTGTTCTTCCAGAGTCTACTGATTCCACTATATATTGGTGGGTCTGCCTTTAAGTTTATCTTTTTCCTTGTTGTTGTTAGGCTGGATTAGAGTCTGTCATTAGCTAGATTTTGAGTTTGACTTCGGGTCAATCGTCATGTCTTTACATAGTATCGAAACTAGGTCCATCCTGTTTGGGCTTTCAGTCCACACTCGAGATGCGTCTGGTGTGAAGGGGAGTGTAAGAGTGGGTTAGAGTCCCACATTGGTTTGAGGGATGATTTTTTTATATGGTCTTGGGCACTCTTCTACCCATGAAATAGCTTTTGGGGTTGAGTTAGGTTAACTTTTAAGTGTCGTATCATTATCTTTACAGTTTTTATGAATATTTTTTTCTATTGAAGTTGTGTTGCTGATGCTGCTTGGTATGTTCTTTCAGTGCAGGTCTGAAGAGGAGCTCTCTGAGATTCAAGGTAAACTTTTTTCCTTGTAAAACATGCCTTTAATAGGAAAATTACAGATTCTTGTGTTCATGATGGAGTTAAATTATATATACTAACATTGTAAATTATTTTTTTAACTCTATATGGTTACACAATCTCTTGAAACTTGTTTCTGCACTGGATGCAATCTTGTATGTTGTAGCTATAGGCTATTTGACTGTTTCATGTAACCTGTGAAATTGTGATCCCTTATGACTTTGTTATAGAGATTGATATGCCTTTTATATAGAACTGTTGCGTGATTCTCTTGATCATACACCATATTCAAATATGTAGAGTGGCATGGCACTGTCTCTACGCAAAGTTGAAACTGCCCTTAGATAAGAAATGTGATGTTGCATGTTTGGCGTGCTATCATTTGCAGGAACTCAACTTTTAAGCACAACATTGAGTGTGAAAGAGTATGTGCAAGATGAATTTCAAAAAGTGGAAGAACAAGTCATACTTGGTAACAAGCAGCTTTTCCCTTTTCCTATAACCTTGGATGATTTCTTCTGGGCATTTGGAATGCTCAGATCAAGGGCGTTTTCCCGTGGTGGGATTCAAAATCTAATGCTGGTCCCCTTTGCTGACCTGGTAAGATTTTAGGTAAACAAAATTACTTAGATAAGCAATTGAAGTTTTCTAGTGATGAATGACTACTTATAAGAAGTCCACAATGAAAAGGAGGAAGTGTTGGATTCAGAATAAATTCATCTTAGTTACAAGATTTATTCAAAAGTATGTTAATGATCAAATGAACCTTTATAGATATGAAAGCTTTAGTTTCAGCTAGAAACAAGAATTAACAGAGTCCGAGGACTGTTGTCAGAATTTCTTTGTTTGTTGAAGTTCTTTTGGCTATCGATTGGTGAATAACGTTATACAAATGGTTTACTTATCAGGCAAACCACAGTGTCAAAGTGACTACTGAAGATCATATCCATGAAGTTGGGGGACCAGCCGGTCTGTTCTCCTGGGATTTGTTATTTTCTTTTCAAAGCCCATTGAGACTGAAGGCTGGTGACCAGGTAAGGCTTGCTGAGTTTTTCAAAAGGAAAAGTCACTCTGCTATTGGTCATACAAATTCCAACATTTTGAGTAAAAACATTCATTACTTCCTATCTCATAATTTCATGCATTATGTAGCATTTTTGCTGGATCATCTGTTAAGAGTCTATAGGAGGCCTTGTTTGCTTCATATATTTGATTGAAGATTTGAAGTACTTCTGTTAGAACTAAAACCTTTTATGTACTCATACCACAATGGTACTTAACAGATGTGTTTTTGACAGTTTCTTATCCAATATGGCTTGAAGAAAAGTAATGCTGATATGGCTATTGGCTATGGCTTCATCGAACCAAACTCAGCTCGTGATGCATTTACATTAACATTGGAAATATCAAAGACTGATGATTTTTATGGGGACAAGCTGGATATAGCAGAGTCAAATGGCCTAGGAGAAACTGCTGAATTTGACATAAAACTTGGACAATCTCTCCCTCCTCCTCTATTTCCATATCTAAGGCTTGTTTCCCTTGGTGGAACTGATAATTTCCTACTAGAATCAATTACTGGAAATGCTGTTTGGAATCTTCTCGAGTTGCCTGTCAGCAGAGCAAACGAAGAGCTCATATGTAAAGTTGTACGAGATTCATGCAGATCTGCACTTTCTGGATATCACACCACAATTGAAGAGGTAGGACATTGTCATTCCTCTTGTTCTTACCATATTTTTGTTCTCCATGTCTACATTGTCGCCTTCCTTTGAAGCATTCTGCTCAATACTATGGTATCTGGTCTCTAAATTGGAGAATAGAACTGTTTTTATCTCCATTATGTGGGTACATGTATTGTCTATTGGCATTGAACATAATGATTATTGTAGGATGAGAAACTGATGAAGGGAGGGAACCTCAGTTCAAGGCTTCAGATAGCAGTAGGGGTGAGAGCAGGGGAGAAGAAGGTTTTACAACAAGTCGACGATATCTTTAGAGAAAGAGAACTGGAACTAGATGAATTAGAGTACTACCAAGAAAAGGAGGCTTAAAGATCTTGATCTTGTTGGATAGCCAAAGTAAGGAACTCTCTGCAGACCTTATTATCATTCTAGTTGAGTTATAACAGCTTGGACTTCAAAGTCAGAGGCGGATCTAGAATTTATAGGCTCATATACGAACCTCAACTTAGCTATACGACTTCTCAGCACACATTTTGGATTTTCTTCAAGTACCCTTTATTGAGCATGACATTTAGATAAACGATCAAACTGTTACATTTCTTTGCTCTACATTTTAGAGCATTTGATAGTAAAAAAAGGTTATATTCCTGTAAAAAAAAACTGTGGTATCAAGTACAATCAACACAGTCCAACTTGTGGAAGAGAGTAAAAACATATGAAC

Download sequence region

Download sequence (3.4Kb)

Get flanking sequences on SL2.50ch05

mRNA Solyc05g013150.2.1

Ontology terms

terms associated with this mRNA

GO:0009507 – chloroplast

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc05g013150.2.1 Set domain protein (AHRD V1 ***- C1EFC8_9CHLO); contains Interpro domain(s) IPR011192 Rubisco methyltransferase
TACAACCATTTAATTATCATTTATCTTTTTTTTAGTCCTTTTTCATTCTGCAGCATTAAAGAACAAATGAGATAACATTTGTAGAACCAATTAAAGCTAGAGTGAAACATGGCTTCTGTTTTCTCTTCTTCTTTCTTCTGTCCACTCAAAACCACAAAATTAAGAATAAAGCTTCAAACTTTACAGAGTTCTCAAAAACCATTCTTGATAAGTTCACTTCAGTTAAGAGAACTTGACCCAAAAATCCCGCAACCTGTCCAAACATTCTGGAAGTGGCTATGTGATGAAGGAGTTGTATCAATAAAGACACCTGTAAAGCCAGGAATTGTAGCAGAGGGTTTAGGATTAGTTGCTAAGAGAGATATTTCAAAAGGGGAAACAGTTTTAGGAGTGCCTAAAAGGTTCTGGATAAACACAGATGCAGTTGCAGAATCTGAAATTGGGAATGTTTGTACTGGATTAGAACCTTGGATTTCTCTTGCTCTTTTCTTGTTGAGAGAGAAATGGAAAGATGATTCCAAGTGGAAATATTACATGGCTGTTCTTCCAGAGTCTACTGATTCCACTATATATTGGTCTGAAGAGGAGCTCTCTGAGATTCAAGGAACTCAACTTTTAAGCACAACATTGAGTGTGAAAGAGTATGTGCAAGATGAATTTCAAAAAGTGGAAGAACAAGTCATACTTGGTAACAAGCAGCTTTTCCCTTTTCCTATAACCTTGGATGATTTCTTCTGGGCATTTGGAATGCTCAGATCAAGGGCGTTTTCCCGTGGTGGGATTCAAAATCTAATGCTGGTCCCCTTTGCTGACCTGGCAAACCACAGTGTCAAAGTGACTACTGAAGATCATATCCATGAAGTTGGGGGACCAGCCGGTCTGTTCTCCTGGGATTTGTTATTTTCTTTTCAAAGCCCATTGAGACTGAAGGCTGGTGACCAGTTTCTTATCCAATATGGCTTGAAGAAAAGTAATGCTGATATGGCTATTGGCTATGGCTTCATCGAACCAAACTCAGCTCGTGATGCATTTACATTAACATTGGAAATATCAAAGACTGATGATTTTTATGGGGACAAGCTGGATATAGCAGAGTCAAATGGCCTAGGAGAAACTGCTGAATTTGACATAAAACTTGGACAATCTCTCCCTCCTCCTCTATTTCCATATCTAAGGCTTGTTTCCCTTGGTGGAACTGATAATTTCCTACTAGAATCAATTACTGGAAATGCTGTTTGGAATCTTCTCGAGTTGCCTGTCAGCAGAGCAAACGAAGAGCTCATATGTAAAGTTGTACGAGATTCATGCAGATCTGCACTTTCTGGATATCACACCACAATTGAAGAGGATGAGAAACTGATGAAGGGAGGGAACCTCAGTTCAAGGCTTCAGATAGCAGTAGGGGTGAGAGCAGGGGAGAAGAAGGTTTTACAACAAGTCGACGATATCTTTAGAGAAAGAGAACTGGAACTAGATGAATTAGAGTACTACCAAGAAAAGGAGGCTTAAAGATCTTGATCTTGTTGGATAGCCAAAGTAAGGAACTCTCTGCAGACCTTATTATCATTCTAGTTGAGTTATAACAGCTTGGACTTCAAAGTCAGAGGCGGATCTAGAATTTATAGGCTCATATACGAACCTCAACTTAGCTATACGACTTCTCAGCACACATTTTGGATTTTCTTCAAGTACCCTTTATTGAGCATGACATTTAGATAAACGATCAAACTGTTACATTTCTTTGCTCTACATTTTAGAGCATTTGATAGTAAAAAAAGGTTATATTCCTGTAAAAAAAAACTGTGGTATCAAGTACAATCAACACAGTCCAACTTGTGGAAGAGAGTAAAAACATATGAAC

Download sequence (1.9Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc05g013150.2.1	SL2.50ch05:6235651..6238593	467	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc05g013150.2	SL2.50ch05:6235300..6238701	3,402	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc05g013150.2.1.1	SL2.50ch05:6238127..6238701	575	-	1
exon	exon:Solyc05g013150.2.1.2	SL2.50ch05:6237712..6237740	29	-	2
exon	exon:Solyc05g013150.2.1.3	SL2.50ch05:6237106..6237317	212	-	n/a
exon	exon:Solyc05g013150.2.1.4	SL2.50ch05:6236672..6236797	126	-	n/a
exon	exon:Solyc05g013150.2.1.5	SL2.50ch05:6236003..6236407	405	-	n/a
exon	exon:Solyc05g013150.2.1.6	SL2.50ch05:6235300..6235813	514	-	n/a
intron	intron:Solyc05g013150.2.1.2	SL2.50ch05:6237741..6238126	n/a	-	n/a
intron	intron:Solyc05g013150.2.1.3	SL2.50ch05:6237318..6237711	n/a	-	n/a
intron	intron:Solyc05g013150.2.1.4	SL2.50ch05:6236798..6237105	n/a	-	n/a
intron	intron:Solyc05g013150.2.1.5	SL2.50ch05:6236408..6236671	n/a	-	n/a
intron	intron:Solyc05g013150.2.1.6	SL2.50ch05:6235814..6236002	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc05g013150

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17819658%2Fdetails feature 17819658

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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