Solanum lycopersicum mRNA Solyc05g013790.2.1
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Name | Type |
Length
2,293
|
Organism |
Description
Nucleoporin GLE1 (AHRD V1 *-*- C0H9R7_SALSA); contains Interpro domain(s) IPR012476 GLE1-like
|
Location(s)
SL2.50ch05:7100783..7110858
|
Ontology term(s) |
GFF source
ITAG_eugene
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- Interpro2go term
- GO:0005643
- Length
- 10076
- Nb exon
- 15
![]() | spliced mRNA sequence, including UTRs |
>Solyc05g013790.2.1 Nucleoporin GLE1 (AHRD V1 *-*- C0H9R7_SALSA); contains Interpro domain(s) IPR012476 GLE1-like
AAGAACTAGTTTATTCAAAAAAAATGGGTGCTGTTAAACTGCAACTCCCGTTGCCTAAAAGTGTTGATGGAGTCACCCTGGATCCAAATCCTGATTGGACCTTTGATGCTTTATTGGTTGAGCTCAATTCGATTGAGAAGAAGCTCAATCCATCATCAAAATTTCCAATACCTTTTACGAAAACAGAATCTCGACAACTCTCGGCTTCGAAGGATAATTCTCGGAGAGGCTTTGTTATGCAAGTGTCTGATGACGACGTGGAGGATATGGACAGAGATACTAAGCATGAAGTTGGTGATCATTTACTTATGGGAGGAAAACGGTTTGCCTGTCACGAAATCTATCTGAGTGATAGCGACCAATCTGAAGAAGGCCTAAACATCGAACTTCAAGATGATCTAATGGATAAAGTGGGATTAGTGGAAAGTGCTTTATCTGAGTTAGCTCATGACCATCAGCTTACTATTGCGGAGGAAATGAGAGATCAACTATCAGTACTTGAAGCCGAGTTGACGGATGAAAGTGAGAAGCTTGCCTCCATACTAGAACGAGTTGAGAGAAACACTGAAGCTCAAAGGGAAATGAACAGAAAATTCGACATGCAGTACCAACGTAAAATTGCAGAAGCCCTTGATGATCACCTAACTACGGTACAAAGGGATCACGAACACAGATCCCAAATTGAAGAAAGGAGAATAAGAGATGATGCAGCTCGTGAAGAGGCCAAGAGGAAAGAAAAAGCTCTTCATGAAGAAAAAGCCCGGCAAGAAAGGATCAGAGCAGAAACCAAGGTGCAAGCTAGGCTGGAAGCTGAAAGAGTTGAAAAGGAAAAAGCTGCTGCGCTGGAAGCTGAAAGAGTTGAAAAGGAAAAAGCTGCTGCGCTGGAAGCTGAGAGAAAAGCAGCAAAAGAAGCTGCAGCTGCGTCAGATAAGAAGTCATCTGAGTCAGTGATGACTGCTTCTCCAGAGGCTAGCAAGGTTTCAAGGGATGTCACTAGTCAGCCTGCGAGACCCATATCTGATGGGCAGAAACATTCAACAGGAAATACAATCAGGGTGACAGAAAATGCTCAAAAACTGGAGGAGAAAAGATTGTCCGTTTACAATGAAATAGCTGCGCAGAATGACGCACTGGGATTGGGTTCAAACAAGGCTTACCGAAAGTTTGAAATGGAAATAGCCAGACGAATCAGAACTATCACTGGTTCAAAAGAAAATGTCAGAGTGAAAGCAGATGAATTAATTAAGCTAATTAGTGGTTCAACATGTCCACAATCCATCAGCATTGCAATGTTCGCACAGAAGGTGGTGTCCCTGTGTGTGAAGCCTACAGGAAGCTTTAACAGTGCAGTCTATGCTTATGGTCGTGTAATTGTCCATGTTACATCAAAGGTCCCTCTTGCCATGGAAATTCTCATAGCTGAGTTGAACAAAGTTTGCATTTACACAGTTCCTAAGTACATTATGTACTCAGAGGCAGCCTTCCAGACTAAAGAAGCTTACTACAAAGCTATTGGCTATGCAGAGGAAGATGGGAAGATAGAAAGTACTGATAGTTATGTGGATCGCTTAAGTGCATGCATGAAATTATATGGTGCACTTGTTCAGACTGAAGTTGACGGCTGCCAAAACTTGCATGGGATCAGAGAAGGTTGGGCATGGATAGCCAGATTCTTAAATGTTTTTCCTGCAAATTTATACACCGCAGCTGCATTGCAGGCTTTTCTTGAAATGGCAGGTTTTGCTCTACACAAAAGATATAAGACACAATTCAGAAAGCTGCTGGATATTATTACTAGAGATTTTCTAACTGCATTGAAAGATCGAGGTGATGCAAAGTTGGTCAAAGTGATTGTGAGTCTCCGGAGTTATATAGAGTCAAATCAGTTCCTGAATGAACCTGAGGGCTGGCGCCTCAGGAGTTCCTTGGAATCACACAATTTCGCTCCAGATTCAGATCATGATCAACAGTATCATTACCAACAGAATAGATTCTATTAGACTATTACTAGATCTACAAAGAAGGAATCGATTCTTTTTTCCTTCAGTTACTGGAAATTTTATTCAAATCAGCTGATATCAATGAGATGCTTTCTTCTCAGAATCTGAATATGTAACTGCACCTGTATTAGTTGTATACCGTTAATTATGATAAAAGGAAATATGTAATTGCTCTTGTATCAGTTTTTGGTTGATTCTGAACCAGATTACATATGGATTCTTGTAACTTGGAAAAGGCCAGTGTTGTCAATTTCAATGGACCTTGCCTGCAAAGTGTAAGCCAGCCTTATTCA
AAGAACTAGTTTATTCAAAAAAAATGGGTGCTGTTAAACTGCAACTCCCGTTGCCTAAAAGTGTTGATGGAGTCACCCTGGATCCAAATCCTGATTGGACCTTTGATGCTTTATTGGTTGAGCTCAATTCGATTGAGAAGAAGCTCAATCCATCATCAAAATTTCCAATACCTTTTACGAAAACAGAATCTCGACAACTCTCGGCTTCGAAGGATAATTCTCGGAGAGGCTTTGTTATGCAAGTGTCTGATGACGACGTGGAGGATATGGACAGAGATACTAAGCATGAAGTTGGTGATCATTTACTTATGGGAGGAAAACGGTTTGCCTGTCACGAAATCTATCTGAGTGATAGCGACCAATCTGAAGAAGGCCTAAACATCGAACTTCAAGATGATCTAATGGATAAAGTGGGATTAGTGGAAAGTGCTTTATCTGAGTTAGCTCATGACCATCAGCTTACTATTGCGGAGGAAATGAGAGATCAACTATCAGTACTTGAAGCCGAGTTGACGGATGAAAGTGAGAAGCTTGCCTCCATACTAGAACGAGTTGAGAGAAACACTGAAGCTCAAAGGGAAATGAACAGAAAATTCGACATGCAGTACCAACGTAAAATTGCAGAAGCCCTTGATGATCACCTAACTACGGTACAAAGGGATCACGAACACAGATCCCAAATTGAAGAAAGGAGAATAAGAGATGATGCAGCTCGTGAAGAGGCCAAGAGGAAAGAAAAAGCTCTTCATGAAGAAAAAGCCCGGCAAGAAAGGATCAGAGCAGAAACCAAGGTGCAAGCTAGGCTGGAAGCTGAAAGAGTTGAAAAGGAAAAAGCTGCTGCGCTGGAAGCTGAAAGAGTTGAAAAGGAAAAAGCTGCTGCGCTGGAAGCTGAGAGAAAAGCAGCAAAAGAAGCTGCAGCTGCGTCAGATAAGAAGTCATCTGAGTCAGTGATGACTGCTTCTCCAGAGGCTAGCAAGGTTTCAAGGGATGTCACTAGTCAGCCTGCGAGACCCATATCTGATGGGCAGAAACATTCAACAGGAAATACAATCAGGGTGACAGAAAATGCTCAAAAACTGGAGGAGAAAAGATTGTCCGTTTACAATGAAATAGCTGCGCAGAATGACGCACTGGGATTGGGTTCAAACAAGGCTTACCGAAAGTTTGAAATGGAAATAGCCAGACGAATCAGAACTATCACTGGTTCAAAAGAAAATGTCAGAGTGAAAGCAGATGAATTAATTAAGCTAATTAGTGGTTCAACATGTCCACAATCCATCAGCATTGCAATGTTCGCACAGAAGGTGGTGTCCCTGTGTGTGAAGCCTACAGGAAGCTTTAACAGTGCAGTCTATGCTTATGGTCGTGTAATTGTCCATGTTACATCAAAGGTCCCTCTTGCCATGGAAATTCTCATAGCTGAGTTGAACAAAGTTTGCATTTACACAGTTCCTAAGTACATTATGTACTCAGAGGCAGCCTTCCAGACTAAAGAAGCTTACTACAAAGCTATTGGCTATGCAGAGGAAGATGGGAAGATAGAAAGTACTGATAGTTATGTGGATCGCTTAAGTGCATGCATGAAATTATATGGTGCACTTGTTCAGACTGAAGTTGACGGCTGCCAAAACTTGCATGGGATCAGAGAAGGTTGGGCATGGATAGCCAGATTCTTAAATGTTTTTCCTGCAAATTTATACACCGCAGCTGCATTGCAGGCTTTTCTTGAAATGGCAGGTTTTGCTCTACACAAAAGATATAAGACACAATTCAGAAAGCTGCTGGATATTATTACTAGAGATTTTCTAACTGCATTGAAAGATCGAGGTGATGCAAAGTTGGTCAAAGTGATTGTGAGTCTCCGGAGTTATATAGAGTCAAATCAGTTCCTGAATGAACCTGAGGGCTGGCGCCTCAGGAGTTCCTTGGAATCACACAATTTCGCTCCAGATTCAGATCATGATCAACAGTATCATTACCAACAGAATAGATTCTATTAGACTATTACTAGATCTACAAAGAAGGAATCGATTCTTTTTTCCTTCAGTTACTGGAAATTTTATTCAAATCAGCTGATATCAATGAGATGCTTTCTTCTCAGAATCTGAATATGTAACTGCACCTGTATTAGTTGTATACCGTTAATTATGATAAAAGGAAATATGTAATTGCTCTTGTATCAGTTTTTGGTTGATTCTGAACCAGATTACATATGGATTCTTGTAACTTGGAAAAGGCCAGTGTTGTCAATTTCAATGGACCTTGCCTGCAAAGTGTAAGCCAGCCTTATTCA
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unprocessed genomic sequence underlying each location of this mRNA |
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Features that derive from this mRNA |
Type | Name | Location | Length | Strand | Phase |
---|---|---|---|---|---|
polypeptide | Solyc05g013790.2.1 | SL2.50ch05:7101075..7110345 | 578 | - | n/a |
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Features this mRNA is a part of |
Type | Name | Location | Length | Strand | Phase |
---|---|---|---|---|---|
gene | Solyc05g013790.2 | SL2.50ch05:7100783..7110858 | 10,076 | - | n/a |
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Features that are parts of this mRNA |
Type | Name | Location | Length | Strand | Phase |
---|---|---|---|---|---|
exon | exon:Solyc05g013790.2.1.1 | SL2.50ch05:7110834..7110858 | 25 | - | n/a |
exon | exon:Solyc05g013790.2.1.10 | SL2.50ch05:7104640..7104721 | 82 | - | n/a |
exon | exon:Solyc05g013790.2.1.11 | SL2.50ch05:7104284..7104370 | 87 | - | n/a |
exon | exon:Solyc05g013790.2.1.12 | SL2.50ch05:7103083..7103166 | 84 | - | n/a |
exon | exon:Solyc05g013790.2.1.13 | SL2.50ch05:7102722..7102853 | 132 | - | n/a |
exon | exon:Solyc05g013790.2.1.14 | SL2.50ch05:7101430..7101552 | 123 | - | n/a |
exon | exon:Solyc05g013790.2.1.15 | SL2.50ch05:7100783..7101345 | 563 | - | n/a |
exon | exon:Solyc05g013790.2.1.2 | SL2.50ch05:7110488..7110655 | 168 | - | n/a |
exon | exon:Solyc05g013790.2.1.3 | SL2.50ch05:7110263..7110418 | 156 | - | 1 |
exon | exon:Solyc05g013790.2.1.4 | SL2.50ch05:7109690..7109810 | 121 | - | n/a |
exon | exon:Solyc05g013790.2.1.5 | SL2.50ch05:7109423..7109571 | 149 | - | 1 |
exon | exon:Solyc05g013790.2.1.6 | SL2.50ch05:7108827..7108998 | 172 | - | n/a |
exon | exon:Solyc05g013790.2.1.7 | SL2.50ch05:7108182..7108431 | 250 | - | 2 |
exon | exon:Solyc05g013790.2.1.8 | SL2.50ch05:7106065..7106174 | 110 | - | n/a |
exon | exon:Solyc05g013790.2.1.9 | SL2.50ch05:7104926..7104996 | 71 | - | 1 |
intron | intron:Solyc05g013790.2.1.10 | SL2.50ch05:7104722..7104925 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.11 | SL2.50ch05:7104371..7104639 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.12 | SL2.50ch05:7103167..7104283 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.13 | SL2.50ch05:7102854..7103082 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.14 | SL2.50ch05:7101553..7102721 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.15 | SL2.50ch05:7101346..7101429 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.2 | SL2.50ch05:7110656..7110833 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.3 | SL2.50ch05:7110419..7110487 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.4 | SL2.50ch05:7109811..7110262 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.5 | SL2.50ch05:7109572..7109689 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.6 | SL2.50ch05:7108999..7109422 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.7 | SL2.50ch05:7108432..7108826 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.8 | SL2.50ch05:7106175..7108181 | n/a | - | n/a |
intron | intron:Solyc05g013790.2.1.9 | SL2.50ch05:7104997..7106064 | n/a | - | n/a |
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