Sol Genomics Network

Solanum lycopersicum gene Solyc05g018180.2

Name Solyc05g018180.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc05g018180	Length 5,318

Description

Homology to unknown gene (AHRD V1 *--- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810

Location(s)

SL2.50ch05:20178597..20183914

GFF source

ITAG_eugene

From BOGAS: 1

Length: 5318

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc05g018180.2.1	SL2.50ch05:20178597..20183914	3,137	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc05g018180.2 SL2.50ch05:20183914..20178597 (sequence from reverse strand)
ATCACTTTTCATTTGATTTACAAACCTAACCTACAACGAAAAAATAATCTGAAATTTTGATATTCATTGTTCATGGATATGGTGTCTTATGCATACAGAGATGCAGCGGCACAGACAGTATCAACAAAAAAAGTTGCCATTTCACCCTCCGATGAACTTACCTACCCCTTTGGAGAATTGGCCGTAGACTTCACCCAATCGGAGCTCCGGGAAGCTGCATATGAGATCCTTGTCGGTGCTTGCCGGAGCTTTAACTCTGGCAAGACATTGAAATATGTTTCCAGCTCCGTTAAATCGTCTACCTCATCATCATCGTCCAAGGCGGCTAGTAAAGTGAAGAAGGCGCTTGGTTTGAAGAAGAATTTAGAATCGGTGAGTGGGAAAAAGGCTTCTACTGTTGGTGTTGCTGAGCTTATGAGGGTACAAATGGGGATTTCAGAGCCAACTGATACTAGGGTCCGACGAGCCTTCTTGAGAGTTGCTGCTGGACAGGTTTATACTACTTTATTTGTGCCTTCATTGATTGATTTTAATTTTTTTTTGTTGCCCCCAAAGCTTGGTATTTTACTGGGAAAAGCAAAGGAGACACTAACTAATTTGCAGCAACAGACGGATGATCTTTCCTCCATTATTTACATTTTGGGTATCTTACTTATCATTGATTGGTTGAGAATTGATTCTATGGAGGGAGAAAGCTTTTACTTATTGATGCGATGTATGCTCAGCTACTTAAACTTGATGGATTCATTTAAAAGGAATTCGATATACACTATAGATCAATATTCTACAGCAATGTTCTTTATGCTGCTGCTTAGTGATTAGTTTGTTTCTTCTACTTACCAGCTTGGAAGACGTCTTGAGTCAATGGTTCTACCACTGGAGCTCTTACAGCAGTTCAAAATCTCAGATTTTCCAAATCCGCAGGAATATGAAGTGTGGCAGAGGAGAAACTTGAAGCTACTAGAGGCTGGACTTGTCTTGCATCCATGCTTGCCGCTGGATGAGATAGATACACGTCCAAAACAGCTTCAGCAGATTATACGTGGGGCTCTGGTGAAACCCATGGAAACTACGAAGCACAGTGAATCAATGCTAGAACTACGAAATCTTTCCACGTCCCTCGCCTGCAGATCATTTGATGGGTCGAGCCCTGAGATATGCCATTGGGCAGATGGAACACCATTGAATCTCCGACTCTACCAAATATTGCTTGAAGCTTGTTTTGATGTGAATGATAAGATCTCTGTTATTGAAGAAGTTGATGAGGTCTTAGAAATCATTAAAAAAACTTGGGTTGTTCTTGGTATAGACCAGATGTTCCATAATATTTGCTTTTCATGGGTTTTATTTCATCGATATGTTGCAACCAGCCAAGTTCAAAAAGAGCTGCTCTTTGCCTCTGATAATCTGTTGTCAGATGTAGCAAAGGATTCCAAGACAGTAAAATACCCAACTTGCTCTCAGACCTTGAGTTCTCTACTTGGTCTGATCGTAGGTTGGGCAGAGAAAAGGCTGCTTGTATATCATGATAGCTTTTACAGGGACAACATTGATAGCATGCAAAGTCTTCTCTCTCTGAGTTTATCAGCTACGGAAATTTTGGTCGAACACAGTTCAGGCAACTATCACAAAAGGAGTAAAGAGGTTGATGTTGCATTTAGCAGAGTTGATAGTTACATCAGGGCTTCGATGCTCCACACCTTCTCTCAGGCAAGTTAGTCTTCCTGCTTTGGTAAATCTCATCATGGAGTACACACATCATGTCAGGAACTCCAGTTTGCATTATTAATTTAAGGGTAGTTCAGTGTTTTTCGGCTCTCTTTCTCATGAATCTAGAATGGTGTTATTGGTGCTTCCCCTATATTTCTTATCTCAGCTACACTTTGACTTGAAGTGAGAGTTTTTCTTCCCCCTTGTAGAGATGATTGCTTCTGTCATTGTGACAGTTACAATCTCCTGATAGTGTAGAGCTTCATAAGGATTCTACTGATAATCTATATTTGTGCTGCATATTATGTTTCAGTGCAGCAATCATCCTCCATCTAGCTGTTGTACACTTGATGCTTTAAACATCCTGTCCGTACTTTGTTATTTAAAACCTCTAACTTTCATAAGTTAAACTTTTACTCCTTTGGTGGAAAAGTGACTAACTCTGCTTACTCTGCCTAAAGACAGGGAAAAGAGAGGTTGATATCAAGCAGAAAGTCGTCTAAACAACAGCATAATCCTCTTCCTATCCTTTCTATCCTTGCCCAAAATGTTAGTGATCTGGCTTTTAATGAGAAAGAGATATATAGTGCTGTTCTGAAGAGATGGCACCCTCTTGCAACTGGTGTAGCTGTTGCGACACTTCATGCTTGCTATGGAAATGAGCTGAAGAAGTTTGTTTCCGGGATAAGTGAGTTGACTCCAGATGCTGTACAGGTGCTGATAGCAGCTGACAAGTTGGAGAAAGATCTTGTACAGATGGCTGTTGTGGATGCTGTTGACAGTGAAGATGGAGGAAAGTCATTAATGACAGAGATGATTCCTTATGAAGCTGAAGCTGTGATCGCAAACCTCGTAAAATCATGGATAAGTACTCGATTGGACAGACTTAAGGAATGGGTCACCAGGAATCTGCAACAAGAGGTATGTTTCCTTCTCTGTTGCCGGATTGTAACTATGTCTAGTGCCATGGACCATTACCGATAAACACTACACTCTTTCTTCAAATCTGGATGTAAGAAAATGAAGGTTTTGGGGTCATGGCGTTGAAAAAATTTCTTTCAGATAATTCTTTTCCCTGTATTAAATATTTTGGTCCTATTATTGAGTAATAATACAAAAGGAAAGAGGGAGAGTCCGCCCTCCACTGCAAAAAGTATAGTATCAAGTATACCCAGTATTATTCAACTATCTTGTAATTAGGGGTCGTTTGGTTGCTGGTTAGGCACTAAGTTATTCATGTATTTAGTCATGCATAAGTAATATCATGTTTGTTAATATTCTTTTGCGATGTATAAAATTCAATTGACTTGATATGGTGTTTGGTTTGCAATTTAGAAACTCGTATAACTAGTACATGTATAAGTTATAAGAGAACATGTGTATTATTTTATGCAGGATTGAAGATGGAATAAATAACTAATTCATGAATAAGTGAAATCCTGCATAAAATAGTATAGAGATTTCCTCATAACTAATTCAAGTACTACTAATACCTGCATAATTCTAACCTAGGGATCATTTGGTAGCTGGATAAGAAACAAGTTATTCCATGTATTAATTTGTGTATAACTAATATGATGTTTGGTAGGTAGATAATAAATAAGTTATTTATATATAGAATTAATACGATGTTTAGGTAACAATTTAAAATTTTGCATAACTAATACATGTATAAGTTAAGAGATAATGTATGTATTATTTTATGCAGTATAATAACTAATAAGTACATGAATAACTAGTTCCTGCATAACTAACATATGCATAAAATAATACACAGGTTCATTCATTACTATTTCCTACCGTACTAATACCTCCATAACTCTAACCAACTACTGAAGTCTCAGATTTTCCTTCACTCATCCGGTATGCCTGGAAGCTTCCTGCCAAGTCAAAGGGTGAAAATAATGATAGGATCTGTCTTCATTATCATTGTTCTTTGTCCTTCATCCCCCGTCCAACTAAACAGAGAGGAGAGCAGAGAGAGAGAAAGAGATTGTCCAAATAACATTTTTATCTCCTGTGTCTCTTACTTTCCCCCTGGCGGAGGATTAAGAGAAATTGTGAAGTTCAAGTCATGTTTATATTATCTTATTATCATATTGGATATGGTCTGCTGGTGCTACTTGGTCATGTGCTGTATACAAACCTTGAACAGATAGCTAAAGTGGTACATCATCACCTGATCTTTCACTTCCTTTTGTAGATTTGGAACCCTCGTGCAAATAAAGAGCGAGTTGCTCCCTCTGGAGTGGAGGTCCTACGCAGTATTGATGAGACTTTTGAAGCATTTTTTTTGTTACCGATACCTATGCATCCAGATTTGCTTCCAGAATTAATGAATGGTCTTGACAGATGCCTGCAGAACTACATATTGAAGGCTATATCTGGCTGTGGTAAATATTAATTTTGGCTGCCATGTATTGATAAATGATGTGATAGTTGACATTGTAGATCACTAATTTCTAGTGTGTTGCAGGATCTCGAAGTGCCTTTGTTCCGACTATGCCTGCTTTGACTAGATGCTCAACTGGGTCAAAATTCCGTGTGTTCAGGAAGAAAGAGAGATCTCCTATGGTTCCGTATAGGAAATCTCAAAGTGGGACCACTAATGGAGATGATTCTTTCAGCATACCTCAGTTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTAGATGTACTTGAGAAAAGGACAATTTCTCAATTGAGGGATAATACACGTGTTCATGATGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGTTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTATCTATATGTAGCAGATGTTTCATCATCCAGGATTGAACCTTTCCTCCAGGAGCTGGAGAATAACCTTGAGATCATATCGGCAACAGTTCATGACAGGGTCCGCACACGTGCTATCACTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCTGGAGGACCTTGTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTAAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCTTATAGACAAGTATTCAGCTACTTTGAAAGGCATTCTTCCTCTTTTCCATACTGATACCGCTATTCTGATTGAGCAACTTGAACATGCCACTGAAGATAATTTTGGCACTTCAGCTAAATCCAGACTTCCCTTGCCTCCTACATCAGGTAACTGGAGTCCAACTGAGCTCAGCACCATTATGCGTGTTCTGTGTTATCGAAATGATAAAATTGCTTCTAAGTTTCTAAAGAAGAAATACAACTTGCCAAAGAAACTGTGATTATTTTGTACACCATGTGTATCTTAGGTTAGGTTGTTCATAATAGTTGTGGTGTGATTATTTTGTACAGAATACTTCTGATTTATTGAGGCATATCATATGACTGTTAGCAAGTTAAAAGAAGAAAAGAATTGGTCAGTTTGTAAAGCAAGATTTTGAGGATTACTGTAATGGGTGTGAAATTATGACATGTTGCTACT

Download sequence region

Download sequence (5.2Kb)

Get flanking sequences on SL2.50ch05

mRNA Solyc05g018180.2.1

Ontology terms

None

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc05g018180.2.1 Homology to unknown gene (AHRD V1 *--- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810
ATCACTTTTCATTTGATTTACAAACCTAACCTACAACGAAAAAATAATCTGAAATTTTGATATTCATTGTTCATGGATATGGTGTCTTATGCATACAGAGATGCAGCGGCACAGACAGTATCAACAAAAAAAGTTGCCATTTCACCCTCCGATGAACTTACCTACCCCTTTGGAGAATTGGCCGTAGACTTCACCCAATCGGAGCTCCGGGAAGCTGCATATGAGATCCTTGTCGGTGCTTGCCGGAGCTTTAACTCTGGCAAGACATTGAAATATGTTTCCAGCTCCGTTAAATCGTCTACCTCATCATCATCGTCCAAGGCGGCTAGTAAAGTGAAGAAGGCGCTTGGTTTGAAGAAGAATTTAGAATCGGTGAGTGGGAAAAAGGCTTCTACTGTTGGTGTTGCTGAGCTTATGAGGGTACAAATGGGGATTTCAGAGCCAACTGATACTAGGGTCCGACGAGCCTTCTTGAGAGTTGCTGCTGGACAGCTTGGAAGACGTCTTGAGTCAATGGTTCTACCACTGGAGCTCTTACAGCAGTTCAAAATCTCAGATTTTCCAAATCCGCAGGAATATGAAGTGTGGCAGAGGAGAAACTTGAAGCTACTAGAGGCTGGACTTGTCTTGCATCCATGCTTGCCGCTGGATGAGATAGATACACGTCCAAAACAGCTTCAGCAGATTATACGTGGGGCTCTGGTGAAACCCATGGAAACTACGAAGCACAGTGAATCAATGCTAGAACTACGAAATCTTTCCACGTCCCTCGCCTGCAGATCATTTGATGGGTCGAGCCCTGAGATATGCCATTGGGCAGATGGAACACCATTGAATCTCCGACTCTACCAAATATTGCTTGAAGCTTGTTTTGATGTGAATGATAAGATCTCTGTTATTGAAGAAGTTGATGAGGTCTTAGAAATCATTAAAAAAACTTGGGTTGTTCTTGGTATAGACCAGATGTTCCATAATATTTGCTTTTCATGGGTTTTATTTCATCGATATGTTGCAACCAGCCAAGTTCAAAAAGAGCTGCTCTTTGCCTCTGATAATCTGTTGTCAGATGTAGCAAAGGATTCCAAGACAGTAAAATACCCAACTTGCTCTCAGACCTTGAGTTCTCTACTTGGTCTGATCGTAGGTTGGGCAGAGAAAAGGCTGCTTGTATATCATGATAGCTTTTACAGGGACAACATTGATAGCATGCAAAGTCTTCTCTCTCTGAGTTTATCAGCTACGGAAATTTTGGTCGAACACAGTTCAGGCAACTATCACAAAAGGAGTAAAGAGGTTGATGTTGCATTTAGCAGAGTTGATAGTTACATCAGGGCTTCGATGCTCCACACCTTCTCTCAGGGAAAAGAGAGGTTGATATCAAGCAGAAAGTCGTCTAAACAACAGCATAATCCTCTTCCTATCCTTTCTATCCTTGCCCAAAATGTTAGTGATCTGGCTTTTAATGAGAAAGAGATATATAGTGCTGTTCTGAAGAGATGGCACCCTCTTGCAACTGGTGTAGCTGTTGCGACACTTCATGCTTGCTATGGAAATGAGCTGAAGAAGTTTGTTTCCGGGATAAGTGAGTTGACTCCAGATGCTGTACAGGTGCTGATAGCAGCTGACAAGTTGGAGAAAGATCTTGTACAGATGGCTGTTGTGGATGCTGTTGACAGTGAAGATGGAGGAAAGTCATTAATGACAGAGATGATTCCTTATGAAGCTGAAGCTGTGATCGCAAACCTCGTAAAATCATGGATAAGTACTCGATTGGACAGACTTAAGGAATGGGTCACCAGGAATCTGCAACAAGAGATTTGGAACCCTCGTGCAAATAAAGAGCGAGTTGCTCCCTCTGGAGTGGAGGTCCTACGCAGTATTGATGAGACTTTTGAAGCATTTTTTTTGTTACCGATACCTATGCATCCAGATTTGCTTCCAGAATTAATGAATGGTCTTGACAGATGCCTGCAGAACTACATATTGAAGGCTATATCTGGCTGTGGATCTCGAAGTGCCTTTGTTCCGACTATGCCTGCTTTGACTAGATGCTCAACTGGGTCAAAATTCCGTGTGTTCAGGAAGAAAGAGAGATCTCCTATGGTTCCGTATAGGAAATCTCAAAGTGGGACCACTAATGGAGATGATTCTTTCAGCATACCTCAGTTGTGTGTCCGTATAAATACTTTGCATTCCATACGAAAAGAATTAGATGTACTTGAGAAAAGGACAATTTCTCAATTGAGGGATAATACACGTGTTCATGATGATAATATTGTTGATGGGTTGGGCAAATGTTTTGAGCTGTCAGTAGCTTCTTGTTTGGAAGGGATCCAGCAGCTTTCTGAAGCAATTTCATATAAAATCATCTTCCATGAGTTGAGGCATATCTTCTGGGATTATCTATATGTAGCAGATGTTTCATCATCCAGGATTGAACCTTTCCTCCAGGAGCTGGAGAATAACCTTGAGATCATATCGGCAACAGTTCATGACAGGGTCCGCACACGTGCTATCACTAATGTAATGAAAGCCTCTTTTGATGGATTCTTGTTGATTTTGTTGGCTGGAGGACCTTGTCGTGCTTTTTCACTTGCTGATGCTGCAATTATAGATGAAGATTTAAAGTTCCTAATGGATCTATTCTGGTCTGATGGGGATGGGTTACCGACTGACCTTATAGACAAGTATTCAGCTACTTTGAAAGGCATTCTTCCTCTTTTCCATACTGATACCGCTATTCTGATTGAGCAACTTGAACATGCCACTGAAGATAATTTTGGCACTTCAGCTAAATCCAGACTTCCCTTGCCTCCTACATCAGGTAACTGGAGTCCAACTGAGCTCAGCACCATTATGCGTGTTCTGTGTTATCGAAATGATAAAATTGCTTCTAAGTTTCTAAAGAAGAAATACAACTTGCCAAAGAAACTGTGATTATTTTGTACACCATGTGTATCTTAGGTTAGGTTGTTCATAATAGTTGTGGTGTGATTATTTTGTACAGAATACTTCTGATTTATTGAGGCATATCATATGACTGTTAGCAAGTTAAAAGAAGAAAAGAATTGGTCAGTTTGTAAAGCAAGATTTTGAGGATTACTGTAATGGGTGTGAAATTATGACATGTTGCTACT

Download sequence (3.1Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc05g018180.2.1	SL2.50ch05:20178796..20183842	955	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc05g018180.2	SL2.50ch05:20178597..20183914	5,318	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc05g018180.2.1.1	SL2.50ch05:20183423..20183914	492	-	n/a
exon	exon:Solyc05g018180.2.1.2	SL2.50ch05:20182205..20183071	867	-	n/a
exon	exon:Solyc05g018180.2.1.3	SL2.50ch05:20181284..20181739	456	-	n/a
exon	exon:Solyc05g018180.2.1.4	SL2.50ch05:20179812..20180001	190	-	2
exon	exon:Solyc05g018180.2.1.5	SL2.50ch05:20178597..20179728	1,132	-	n/a
intron	intron:Solyc05g018180.2.1.2	SL2.50ch05:20183072..20183422	n/a	-	n/a
intron	intron:Solyc05g018180.2.1.3	SL2.50ch05:20181740..20182204	n/a	-	n/a
intron	intron:Solyc05g018180.2.1.4	SL2.50ch05:20180002..20181283	n/a	-	n/a
intron	intron:Solyc05g018180.2.1.5	SL2.50ch05:20179729..20179811	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc05g018180

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17823373%2Fdetails feature 17823373

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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