Solanum lycopersicum mRNA Solyc05g053240.2.1

mRNA details  
Name
Solyc05g053240.2.1
Type
mRNA
Length
3,277
Organism
Solanum lycopersicum
Description
Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box
Location(s)
SL2.50ch05:63379380..63389453
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005634
Length
10074
Nb exon
12
Sifter term
GO:0003700
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc05g053240.2.1 Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box

AATTTAAGCTAAAATATAGCTTGATTTCACTTTTCTGAGTGGAATTTTTGAATAATTTTTGTTCTTGATGTATATTTCATCTTTAATTTGTGAAGGGTGTTTATGAGGGGAGAGTTTTCTGTCGATGGAGGCTCGTAATTTTCATGGTCCAGTTGTGTCAAATATGGAGGTTAGTGGGAAGAAGAGTAGGGAGTGGGATTCGAATGATTGGGTGTGGGATGGTGATAGATTTACTGCTGAACCGTTGAATTCTCTGCCATCAGATTGCAGAAGTAAACAGCTGTTTCCTATAGGATCAGAGATTCCAGAAACTGCTACTGGAATCTTCAATGGTTTTTCATCTGGTGCAGGTGAATTGACATTAGGAAATGATAAAGGGAGGAAGGAACTGGAGAAAAGGAGGCGGACGATTGTAATTGATGATGATGATGAGCAGAATGGTGAAGCTGGATCCCTCAATTTGAAGCTTGGTGAACAGTTGTATCCTGTGATGGAAGAGGAAGTGGAAAAGTGGGAAGGGAAGAATGGTAAAAAGACGAAAATTAGTGGGGTTTCATCGAATCGTGCTGTTTGTCAAGTGCAGGACTGTCGAGCTGATTTGAGCAGTGCTAAAGATTACCATCGACGACATAAAGTGTGTGAGGTGCATTCTAAAGCAGCAAAAGCTTTGGTTGGGAATGTTATGCAGCGTTTCTGTCAGCAGTGTAGTAGGTTTCATGTTCTAGAAGAGTTTGATGAGGGGAAGCGGAGCTGTCGTAGGCGTTTAGCTGGTCATAACAAACGAAGAAGGAAAACACATCCAGAAAATGTAGCTAATGGAGCCTCCGTGAATGATGAGGGGGGTAGCAACTACTTATTAATTAGTCTGCTGAGGATACTGGCCAATGTACAGTTCAATAGCTCGGATCAAACTAAAGACCAGGATCTGTTGTCACATCTGCTAAGAAACTTAGCTAGTCTGGCTGGTGCAGCTAATGAGAGGAACGCATCGGGCTTGTTGCCTGCACCTTCAGATCTGCAAAACCCAGGGACATCTATGGAGGCTCCAAAAGAGGACTCTCTTAGGCCTAATGCGAATTGTTTGACTATACCTGCATCAGAAGTGAAAGAGAAGAGAATGGACAGGGGCACGAGCGATGCTGAACGTGGAATTTCACAAAATCTTTGTGCTTTACGGCCTGAGACTCTGTGTTGTAGAAAAGAGAGCTTACCTATCAATGCAAATGCCTCAGTCACCACATCTGCACCGTTGAAGCTAAATATCGATTTGAATAACATCTATGATGATTCTCAAGGTGGCATTCAAAAGTTGCAGAATTCTGATGTCTTTGTAAACCCAGGGGCTGCATCTTCTGGCTGTCCTCTATGGATAAGTCATGACCCTCATAAGTCAAGCTCCACAAGAACAAGTTTGAACTCAGGATCCACCTCATCCCTTTCACCATCTAGTTCAAGTGGAGAGGCTCAGAGTCGAACGGATCGTATTGTCTTTAAACTTTTTGGGAAAGATCCTGGTGAAATTCCCACAGGCTTGCGGAAGCAGGTTCTTGATTGGCTATCACACAGTCCTACAGATATTGAAAGCTATATTAGACCTGGTTGTATCATACTAACAATATATCTTCGGATGGATAAACCCATATGGGAGGAGCTTTATTCTGATCTTAACTCTAGTTTGAGGAAACTTCTTAATGCATCCGCTGGTTCATTTTGGCGAACTGGATGGGTTTATTCTAGGGTGAAGGATCGAGTGGCATTTTTGTTTAATGGGCAGGTTGTTCTGGACACTCCCTTGCCAAGCCATAGAAGCTGTGGGATATCAATCATCAAACCTATTGCAGTTTGTGCCTCTGAAAGAGTTCAATTTTTGGTCAAAGGCTTCAACCTATCTCGTCCCACTACAAGGTTTCTATGTGCCATGGAAGGAAAATATCTAGTTCAGGGGAATTGTACTGATGTGATGGTAGGAGCTGATTCTTGTATGGACTATAATGAGATCCAGTCTCTTAGTTTTCCTTGTACTGTGCCAAATGCTACTGGAAGAGGATTCATTGAGATTGAGGACCATGGTCTTAGCAGCAACTTCTTCCCATTTATAGTTGCAGAGAAAGATGTTTGTTCTGAGATTCGTACATTGGAGAGCATTATTGAGGCTGCTAAAATGGACGATGGTTTTCTGCGAGGAACTGAAGAATTTCAAGCCAGAGACCAAGCGCTGGACTTTTTACATGAACTGGGTTGGCTGCTTCATAGATGTCATTTGAAATTTAGAGTGGGTTCTGGTGCCAGCTTGAATCTCTTCCCTTTTCAGAGATTCCATCGGCTTATAGATTTCTCCATTGACCATGACTGGTGTGCTGTAGTAAAGAAACTGTTGGATGTCTTCTTCAATGGCGTTGTAGATGTAGGACAACAGTCATCGCTTGACATTCCATTGCAGGAGGTTGGCATCCTTCATCGAGCTGTGAGGAGAAAGTGCAGATCTATGATAGATGTCCTCTTGAAATATCGTCATCATGGAGCTTTTGACAAATCAGGACTACAAACTCAACAAGATGATCGTGGCTATTTATTTAGACCTGACACAGTGGGTCCTGGGGGTTTGACTCCACTTCATGTTGTTGCTAGTCTTGCTGGCTATGAGAATATTTTGGATGCATTAATTGATGATCCAGGAGAGGTAGGAATTGAAGCTTGGAAAAGTGCCCGTGACAGTACTGGACTGACACCCAATGATTATGCATGCCTTCGAGGCCATTACTCATACGTCCATATGGTCCAGAAGAAAATCAATCAGAAACCAGGTGATGGACATGTTGTTCTTGATATCCCTGGTTCGTTGTTGGATAGCAATCTCAAGCAGAAACTATCAGATGGTCATAGGTCAGTAAAAGTAACTAGCTTTCAAACTGAGAAGTCTTTAGGGAAACCAATTCACCGACAATGCAAACAGTGCAAGCAGAAATTATCTTATGGAAACTCAGGAACATCACTTGTATACAAACCGGCAATGCTTTCAATGGTTGCAATTGCTGCTATATGTGTTTGTGTAGCTTTGCTATTCAAAAGTTCACCGGAGGTTCTTTATTCGTTCAGACCCTTCAGATGGGAGCTGCTGAACACTACTTGGATAGGACTGGCCACTGGGATTGTAGTCGTAGACGCCTCGGATCTGTGCCCGATTATGTTGTGTAAGATAAGTAAATTGCTTTGTATTTTAACTATATGCACTGCTAATTGCCTGCATCTATGGTTTTAGAACACATTTTTCTTGCTA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc05g053240.2.1SL2.50ch05:63379503..633894351,045+n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc05g053240.2SL2.50ch05:63379380..6338945310,074+n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc05g053240.2.1.1SL2.50ch05:63379380..63380090711+n/a
exonexon:Solyc05g053240.2.1.10SL2.50ch05:63386443..63387066624+1
exonexon:Solyc05g053240.2.1.11SL2.50ch05:63388648..63389087440+n/a
exonexon:Solyc05g053240.2.1.12SL2.50ch05:63389297..63389453157+n/a
exonexon:Solyc05g053240.2.1.2SL2.50ch05:63380534..63380715182+n/a
exonexon:Solyc05g053240.2.1.3SL2.50ch05:63381564..63381724161+1
exonexon:Solyc05g053240.2.1.4SL2.50ch05:63381795..63382208414+2
exonexon:Solyc05g053240.2.1.5SL2.50ch05:63384619..6338469375+n/a
exonexon:Solyc05g053240.2.1.6SL2.50ch05:63384797..63384904108+n/a
exonexon:Solyc05g053240.2.1.7SL2.50ch05:63385307..63385424118+n/a
exonexon:Solyc05g053240.2.1.8SL2.50ch05:63385539..63385674136+n/a
exonexon:Solyc05g053240.2.1.9SL2.50ch05:63385796..63385946151+2
intronintron:Solyc05g053240.2.1.1SL2.50ch05:63380091..63380533n/a+n/a
intronintron:Solyc05g053240.2.1.10SL2.50ch05:63387067..63388647n/a+n/a
intronintron:Solyc05g053240.2.1.11SL2.50ch05:63389088..63389296n/a+n/a
intronintron:Solyc05g053240.2.1.2SL2.50ch05:63380716..63381563n/a+n/a
intronintron:Solyc05g053240.2.1.3SL2.50ch05:63381725..63381794n/a+n/a
intronintron:Solyc05g053240.2.1.4SL2.50ch05:63382209..63384618n/a+n/a
intronintron:Solyc05g053240.2.1.5SL2.50ch05:63384694..63384796n/a+n/a
intronintron:Solyc05g053240.2.1.6SL2.50ch05:63384905..63385306n/a+n/a
intronintron:Solyc05g053240.2.1.7SL2.50ch05:63385425..63385538n/a+n/a
intronintron:Solyc05g053240.2.1.8SL2.50ch05:63385675..63385795n/a+n/a
intronintron:Solyc05g053240.2.1.9SL2.50ch05:63385947..63386442n/a+n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17831832%2Fdetails feature 17831832
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)