Sol Genomics Network

Solanum lycopersicum gene Solyc05g054580.2

Name Solyc05g054580.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc05g054580	Length 2,633

Description

60S acidic ribosomal protein P0 (AHRD V1 ***- D7L9V8_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10

Location(s)

SL2.50ch05:64465253..64467885

GFF source

ITAG_eugene

From BOGAS: 1

Length: 2633

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc05g054580.2.1	SL2.50ch05:64465253..64467885	1,415	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc05g054580.2 SL2.50ch05:64467885..64465253 (sequence from reverse strand)
CACTTCATAGAGCAAATCAGGTTTAGGGTTTTTCTCATTTCTCCCCTTTTTTCAGCAAACCATAGATCTGAATTGAAGAGGTTAAAGTGACGGCGCCGCTGCTGTCCGCCTTGACTGAAGTTCGAATTCGTCTTGGCCCTCTTTTTGTTGTACTAAAAATCTCTTCTTTTCACTTTTAGGGTTAGTTTTCATCTGAAAAAACCAGTTCAAATGGCTCCTAAAGCAACTAAGGCTGAGAAGAAGATTGCTTATGACACCAAAATGTGTCAACTTCTGGATGATTTTACTCAGGTGCTTGTGGCTGCTGCTGATAATGTTGGATCTAATCAGCTACAGAGTATTAGAAAGGGTTTGAGAGGTGATTCTGTTGTTCTTATGGGGAAGAATACTATGATGAAGAGAACTATTAGGGTTCATGCTGAGAAAACTGGCAATGAGACCATCCTGAATCTCATCCCTCTCCTTGTTGTGAGTCTCTTTGCTCCTCTTCGCTGATATTGTGTTAATTCTATACATGTATATGCTCAAATCGTGTTAATTGTACTGAATTTGGTGTTCAAATTATTGAATTTAATCAATTGATACCAAAAATGATAGAAGTATGTTTTTTTTCATAGTAGAGGTAGTACTCAGTTAACTGTACTGAAATTGTTCTTCAGTTTATACTAGAGTTGATATTCCAATCTGATACAATAAATAGTAAAGCTATGTTGCTTAAAAATGTAGACAGGTGCATGATGTATCCTCCGAAAATAGCGTATGCTTGATGTATCCTACACAGTTGTGGCAATATTTTTGGAGAGGCCGAGCAATTAAGTAATAAAGCAAGCTTTTGTTTAGATAGTATTGTACTCAATTAAGTCTATTGAATTTGTTGTCCAGTTTATACTAAAGGAATGTAGGGTTGATCTTCACCAATGGTGTAATCTATGTTTAGAAGTTTAGTATTCCGGTATTGTTTTTTGATATTCAATTTGATACAGTAATAGATAAAGTAAAGGAACTTTTCGATTTGTATGTTCGATGTGTATAATCAGGTTTCTTTTTTTCTGATTTTATAGTATAGGTAACTCAGTTAACTGTACTGAAGTTGTTGTTTGATTTATTATAGGGTAATGTGGGGTTAATCTTCACCAAGGGTGACCTCAAGGAAGTGAGTGAGGAAGTCGCTAAGTACAAGGTAAATTAATTGCCACTCTCTTTTGATATTGTAAATTGATGAAACTTGCTTATGTTTTTGGCTTTTGGGAGTATGTATAAAGTATGTTTAGCTTGTTGATTGATGTGTTTCTTCAAGTGATGCATGAAAATCATTGAGATGAACTTTTTACTAGTTATATTTGTAGTCTTTAAAAAGGTCATTTTCACTTGAAACTGTACTGAAAAAGTCATTATATGGTTTGTATATGCTTTTGCTCTCAATATTATTTTATTTTGTTTCGTCAATTGTCTTGCATTTATTCTAATTGGTGAAGACATGTTTTATGCTTGATGTTTGAATTGATTCCAAGTTTAAGCTGCACTATGTCTCATTCCAGCCTTGTTTACAGTATGTTTATGGTCCTCCATTTCCATTTATATGTTAATAGGTTGGAGCACCTGCTCGTGTTGGTTTGGTGGCTCCAGTTGATGTTGTTGTTCCTCCTGGTAACACTGGTCTTGACCCATCTCAGACCTCTTTCTTCCAGGTGCGTGTGTTATGCTGCCATAAAAATCATTTTTTGTTGTCTGTTTTGAAGTATTTCTTGTTAACTTACATATAATTCATGCAGGTGCTCAACATCCCAACTAAGATTAACAAGGGTACTGTTGAAATTATCACTCCTGTGGAACTCATCAAGAAGGGTGATAAAGTTGGTTCCTCTGAAGCTGCCCTGCTTGCCAAACTTGGTATTAGGCCATTCTCATACGGTCTTGTTGTTCTCTCTGTTTACGACAATGGTTCCGTCTTCAGCCCTGAGGTTCTTGACCTGACTGAGGATGATCTCATTGAGAAGTTTGCCATGGGAGTATCTATGGTTACCTCCTTGGCATTGGCCATCTCTTACCCAACTCTTGCTGCTGCACCCCACATGTTCACCAACGCCTACAAGAATGTGTTGGCCATTGCAATTGAAACCGACTACTCTTTCCCTCTCGCTGACAAAGTGAAGGAATACCTCGCGGTATGTTCTTAATCCCAATGTTCCAAAGATGTAATATATAAACAGTTAGTTAACTTTGTCTCAACTATTCTTGCACTTGCAGGATCCAAGTAAGTTTGCCGCTGTTGCTGCCGCTCCTGCTGCAGCTGCTGGTTCTGGAGCTGCTCCTGCTGCTGCTAAAGAGGAGGAGAAGAAGGAAGAGCCTGCTGAGGAGTCAGATGATGACATGGGTTTCAGTTTGTTTGATTAAGTCTGTTGTTTGTGATGTTATCTGTTTTTTGGTTTCGAAAACAAATTTTTACCTTTTATGTTTTTAGTTTGCAATTTCAATTCAGTTATAAGATTTAGTGGATAATTTTTTTGTTTTGGACCTTAATTCTTTGCCTTTTTATATTTTAATCCTAATAGTTTTGAACAGTATAATACTGATATTTCTACAATTAAAACGTATTGTTACTTCAAACATAAAATTGATATGTCTATATTTGC

Download sequence region

Download sequence (2.6Kb)

Get flanking sequences on SL2.50ch05

mRNA Solyc05g054580.2.1

Ontology terms

terms associated with this mRNA

GO:0005515 – protein binding
GO:0005507 – copper ion binding

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc05g054580.2.1	SL2.50ch05:64465491..64467675	322	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc05g054580.2	SL2.50ch05:64465253..64467885	2,633	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc05g054580.2.1.1	SL2.50ch05:64467418..64467885	468	-	n/a
exon	exon:Solyc05g054580.2.1.2	SL2.50ch05:64466706..64466774	69	-	n/a
exon	exon:Solyc05g054580.2.1.3	SL2.50ch05:64466198..64466296	99	-	n/a
exon	exon:Solyc05g054580.2.1.4	SL2.50ch05:64465721..64466113	393	-	n/a
exon	exon:Solyc05g054580.2.1.5	SL2.50ch05:64465253..64465638	386	-	n/a
intron	intron:Solyc05g054580.2.1.2	SL2.50ch05:64466775..64467417	n/a	-	n/a
intron	intron:Solyc05g054580.2.1.3	SL2.50ch05:64466297..64466705	n/a	-	n/a
intron	intron:Solyc05g054580.2.1.4	SL2.50ch05:64466114..64466197	n/a	-	n/a
intron	intron:Solyc05g054580.2.1.5	SL2.50ch05:64465639..64465720	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc05g054580

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17833392%2Fdetails feature 17833392

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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