Solanum lycopersicum mRNA Solyc05g055690.1.1
 mRNA details
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| Name | Type | Organism | |
|
Synonyms / aliases
mRNA:Solyc05g055690.1.1
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Length
3,276
|
|
Description
Transport protein SEC24 (AHRD V1 ***- C1HAV7_PARBA); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region
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|
Location(s)
SL2.50ch05:65228033..65244510
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| Ontology term(s) |
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GFF source
ITAG_eugene
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- Interpro2go term
- GO:0030127
- Length
- 16478
- Nb exon
- 25
- Sifter term
- GO:0008565
- GO:0005515
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc05g055690.1.1 Transport protein SEC24 (AHRD V1 ***- C1HAV7_PARBA); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region
ATGGAAGCTCCAGGGGGACCTAGACCAGGGAATGTACCACCCAATTACAATCCTGATGCACTTGCTCATGGAATGCAGCATTTGGAAATTAATAGACCCAACCACCCACTTACAAACCCTACTGGTGGTCCTAGGCCTAGTGCAACACCTTTTGGGCAGGTGCCACCCTCTTTTGCTGGTGGGCTGCCTGCGAATCGTCCAGGACCTCCTCCACCTGGTGCATTCCAAAGGGGTCCTCAGCAAACTACACTGCCTTCAAATGTAGTTTCTAGACCAACCATCCCTCCTTCTGTGGGTCAAGCTCCACCGTCCTTTGCATCTAGGCCACCTCCTGCTGGTGCAGTGCTTCATTCTGTTGGTAGTCCTGCCATTCGACCGCCACCTGGTGCTTTGCCTTCTGCATCGGGTCCTCGTGCTGGCCCGCCAGGAACTTTTGCTGCTTCAACAGGTCTTTTTGTGCCTCCTTCAGGTGTTTGTAGTTCAGCTAGTAATGGGCCACCTGCATTTGGTCCAGGGACAATGCAGAGTGGATCACGTTTTCCTCCTCCAAGCAGGCCACCAGATGGAGCTCCTCTGTCAGCAATGTTTCATCTGGAACTCCTTCTCAGCCTCCAAGGATGCATCCATCCTTTGAGATTCCACCTTCAAGCACAACATCAGTTACTGCACAACCACCGCCTCCATTTCTGGGATCAACTCAGAATGTGCCACCTTCTTCAAGTTCCTCCACATTTGCACCACCGGTCCAAGCGATGCCTCCTCCTATGGTTGCTCCTTATGGAATGCAAACATTGCAAACACAGCCCCATCAGGATAATTACGAGTTTAGTGGAAAACATAAAAATTGTTGCTCCACTTTCTGTTGTCCCTGGTTCAATGCAACCACGTATGATGTTTGGGATGGCGTCTCTGCATTCAAATCAAGCAGAAGCTGCAATAACTCCTTCGATGGGTCATGCTGGATCTGCATTTGCTGGGCAATCAAACTTCGATTCAAGTCAAATTCCACGCCCAATATCAAATTCTGCAGTAATCTTGCATGAAACTCGTCAAGGCAATAAAGCCAATCCCCCTCCGCCTGCTACCAGTGACTACATTGTTTGGGATACTGGAAATTGCAGTCCACGGTTCATGAGGTGTACTGTCAATCAGATTCCATGCACCAGTGACCTTTTGACGACTTCTGCAATGCAGTTGTCTCTGTTGGTCCAACCCTTGGCTCTTCCTCATCCGTCTGAACAGCCCATTCAAGTTGTTGATTTTGGGGAAAGTGGTCCTGTTCGTTGCTCTCGCTGCAAAGGCTACATAAATCCTTTTATGAAGTTCATTGATCAGGGAAGGCGTTTCATTTGTAACTTATGTGGATATACTGATGAAACTCCTCAGGATTATCACTGCAACTTAGGTCCAGATGGCAGGCGTCGAGATGCTGATGAAAGGCCAGAACTATGCCGAGGAACTGTTGAATTTGTAGCTACTAAGGAATATATGGTGCGCGAGCCAATGCCTGCTGTATATTTCTTCCTTATTGATGTCTCCATGAATGCCATACAAACTGGTTCAACTGCAGCTGCTTGCAGTGCGATAAGCCAAGTCATTTCTGATCTTCCTGAAGGTCCTCGAACATTGATCGGAATTGCTACATTTGACACGACTATCCATTTTTACAGTCTAAAACGTGCACGGCAGCAGCCATTGATGCTTATTGTCCCTGATGTTCGAGATGTTTATACTCCCCTTCAGAGTGATGTTATTGTTCAACTCTCGGAGTGCCGTGAACATCTAGAGCTTCTCCTAGAAAACATCTCAACAATGTTCGGGCATAACAGGACTGCTGATTCAGCTTTTGGTGCTGCAGTCAAGGCTGCTTTCTTGGCAATGAAAAACACCGGAGGGAAACTTCTTGTATTTCAATCAGTCTTGCCTTCTACTGGTGTTGGAGCCCTTTCTGCTAGAGAGGCTGAAGGAAGAAGCGCAGTATCAGCTGCTGAAAAGGAGGCTCACAAATTACTCCAACCAGCAGACAAAACCCTGAAGACAATGGCTATCGAGTTTGCTGAGTATCAGGTTTGTGTTGATGTGTTTCTTACAACACAATCATATGTAGACATAGCTTCCTTTTCTGTCATTCCTAAAACTACTGGAGGACAGCTGTACTACTATTTCCCTTTCTCTGCTATTTCTGATGCTGCCAAGCTTTACAATGATCTGCGATGGAACATTACTCGGCCCCAAGGGCTTGAGGCAGTTATGCGTGTAAGATGCAGTCAGGGTCTTCAAGTTAACGAGTACTCCGGGAATTATTGTAAACGAATTCCATCAGATGTTGACTTACCTTCGATTGACTGTGACAAAACAATAATGGTAACATTGAAGCATGAAGACAAATTGCAGGATGGTTCAGAATGCTCTTGTCAGTGTGCTCTTCTTTACACCACCATCTATGGCCAAAGAAGAATCAGGATTTCAACTCTCTCTCTGCCTTGCACCACTATGCTTAGTGATTTGTTTCGATCAGCTGACTTGGATACCCAATTTGCATGCATCTTAAAGCAAGCGGCCAGTGAAGTTCCAACAGCACCTCTCCCACATATCCGAGAGCATGTGACAAACCATTGCATTAACATTATATACTCTTATCGTAAATTTTGTGCTACTGTCTCATCCTCTGGACATCTTATTCTTGCTGATGCACTTAAGCTTCTTCCTCTTTACACACTGGCTCTGATTAAAAGCACGGGATTGCGAACTGATGGACCGATTGATACTAGGTCCTTCTGGATTAATTATGTTTCCCCACTGTCCATTTCATTGGCTATCTCTTGGGTGCACCCTAGATTGATAGCCATTCATGAACTCAATACAAAGGAGAATGATGAATCTCTTATTCCTCCTCCTATTCCACTTTCCAGTGAATATATCAATGACAACGGTATCTATCTTCTCGAGAATGGCGAGGACTGTTTAATTTATGTTGGTAACTCTGCAGATCCTGGTGTTATGCATCAACTGCTTGGCATTTCATCTGTTGAACAAGTTCCTGCACAGTTTGTTCTGCAGCAGCATGACAATCCATTCTCTAAGAAGCTCAACAATATCATTAATGAAATTAGACGCCAAAGATGTAACTATCTCAGCTTAAAACTATGCAAAAAGGGAGATTCATCAGGTATGTTGTTTTTCTCCAACATGGTTGAAGACAAGACATCCATTGGACTTTCGTATGTCGAGTTTCTGGCACATATCCATCGACATGTTCAACGCAAAATGGCTTGA
ATGGAAGCTCCAGGGGGACCTAGACCAGGGAATGTACCACCCAATTACAATCCTGATGCACTTGCTCATGGAATGCAGCATTTGGAAATTAATAGACCCAACCACCCACTTACAAACCCTACTGGTGGTCCTAGGCCTAGTGCAACACCTTTTGGGCAGGTGCCACCCTCTTTTGCTGGTGGGCTGCCTGCGAATCGTCCAGGACCTCCTCCACCTGGTGCATTCCAAAGGGGTCCTCAGCAAACTACACTGCCTTCAAATGTAGTTTCTAGACCAACCATCCCTCCTTCTGTGGGTCAAGCTCCACCGTCCTTTGCATCTAGGCCACCTCCTGCTGGTGCAGTGCTTCATTCTGTTGGTAGTCCTGCCATTCGACCGCCACCTGGTGCTTTGCCTTCTGCATCGGGTCCTCGTGCTGGCCCGCCAGGAACTTTTGCTGCTTCAACAGGTCTTTTTGTGCCTCCTTCAGGTGTTTGTAGTTCAGCTAGTAATGGGCCACCTGCATTTGGTCCAGGGACAATGCAGAGTGGATCACGTTTTCCTCCTCCAAGCAGGCCACCAGATGGAGCTCCTCTGTCAGCAATGTTTCATCTGGAACTCCTTCTCAGCCTCCAAGGATGCATCCATCCTTTGAGATTCCACCTTCAAGCACAACATCAGTTACTGCACAACCACCGCCTCCATTTCTGGGATCAACTCAGAATGTGCCACCTTCTTCAAGTTCCTCCACATTTGCACCACCGGTCCAAGCGATGCCTCCTCCTATGGTTGCTCCTTATGGAATGCAAACATTGCAAACACAGCCCCATCAGGATAATTACGAGTTTAGTGGAAAACATAAAAATTGTTGCTCCACTTTCTGTTGTCCCTGGTTCAATGCAACCACGTATGATGTTTGGGATGGCGTCTCTGCATTCAAATCAAGCAGAAGCTGCAATAACTCCTTCGATGGGTCATGCTGGATCTGCATTTGCTGGGCAATCAAACTTCGATTCAAGTCAAATTCCACGCCCAATATCAAATTCTGCAGTAATCTTGCATGAAACTCGTCAAGGCAATAAAGCCAATCCCCCTCCGCCTGCTACCAGTGACTACATTGTTTGGGATACTGGAAATTGCAGTCCACGGTTCATGAGGTGTACTGTCAATCAGATTCCATGCACCAGTGACCTTTTGACGACTTCTGCAATGCAGTTGTCTCTGTTGGTCCAACCCTTGGCTCTTCCTCATCCGTCTGAACAGCCCATTCAAGTTGTTGATTTTGGGGAAAGTGGTCCTGTTCGTTGCTCTCGCTGCAAAGGCTACATAAATCCTTTTATGAAGTTCATTGATCAGGGAAGGCGTTTCATTTGTAACTTATGTGGATATACTGATGAAACTCCTCAGGATTATCACTGCAACTTAGGTCCAGATGGCAGGCGTCGAGATGCTGATGAAAGGCCAGAACTATGCCGAGGAACTGTTGAATTTGTAGCTACTAAGGAATATATGGTGCGCGAGCCAATGCCTGCTGTATATTTCTTCCTTATTGATGTCTCCATGAATGCCATACAAACTGGTTCAACTGCAGCTGCTTGCAGTGCGATAAGCCAAGTCATTTCTGATCTTCCTGAAGGTCCTCGAACATTGATCGGAATTGCTACATTTGACACGACTATCCATTTTTACAGTCTAAAACGTGCACGGCAGCAGCCATTGATGCTTATTGTCCCTGATGTTCGAGATGTTTATACTCCCCTTCAGAGTGATGTTATTGTTCAACTCTCGGAGTGCCGTGAACATCTAGAGCTTCTCCTAGAAAACATCTCAACAATGTTCGGGCATAACAGGACTGCTGATTCAGCTTTTGGTGCTGCAGTCAAGGCTGCTTTCTTGGCAATGAAAAACACCGGAGGGAAACTTCTTGTATTTCAATCAGTCTTGCCTTCTACTGGTGTTGGAGCCCTTTCTGCTAGAGAGGCTGAAGGAAGAAGCGCAGTATCAGCTGCTGAAAAGGAGGCTCACAAATTACTCCAACCAGCAGACAAAACCCTGAAGACAATGGCTATCGAGTTTGCTGAGTATCAGGTTTGTGTTGATGTGTTTCTTACAACACAATCATATGTAGACATAGCTTCCTTTTCTGTCATTCCTAAAACTACTGGAGGACAGCTGTACTACTATTTCCCTTTCTCTGCTATTTCTGATGCTGCCAAGCTTTACAATGATCTGCGATGGAACATTACTCGGCCCCAAGGGCTTGAGGCAGTTATGCGTGTAAGATGCAGTCAGGGTCTTCAAGTTAACGAGTACTCCGGGAATTATTGTAAACGAATTCCATCAGATGTTGACTTACCTTCGATTGACTGTGACAAAACAATAATGGTAACATTGAAGCATGAAGACAAATTGCAGGATGGTTCAGAATGCTCTTGTCAGTGTGCTCTTCTTTACACCACCATCTATGGCCAAAGAAGAATCAGGATTTCAACTCTCTCTCTGCCTTGCACCACTATGCTTAGTGATTTGTTTCGATCAGCTGACTTGGATACCCAATTTGCATGCATCTTAAAGCAAGCGGCCAGTGAAGTTCCAACAGCACCTCTCCCACATATCCGAGAGCATGTGACAAACCATTGCATTAACATTATATACTCTTATCGTAAATTTTGTGCTACTGTCTCATCCTCTGGACATCTTATTCTTGCTGATGCACTTAAGCTTCTTCCTCTTTACACACTGGCTCTGATTAAAAGCACGGGATTGCGAACTGATGGACCGATTGATACTAGGTCCTTCTGGATTAATTATGTTTCCCCACTGTCCATTTCATTGGCTATCTCTTGGGTGCACCCTAGATTGATAGCCATTCATGAACTCAATACAAAGGAGAATGATGAATCTCTTATTCCTCCTCCTATTCCACTTTCCAGTGAATATATCAATGACAACGGTATCTATCTTCTCGAGAATGGCGAGGACTGTTTAATTTATGTTGGTAACTCTGCAGATCCTGGTGTTATGCATCAACTGCTTGGCATTTCATCTGTTGAACAAGTTCCTGCACAGTTTGTTCTGCAGCAGCATGACAATCCATTCTCTAAGAAGCTCAACAATATCATTAATGAAATTAGACGCCAAAGATGTAACTATCTCAGCTTAAAACTATGCAAAAAGGGAGATTCATCAGGTATGTTGTTTTTCTCCAACATGGTTGAAGACAAGACATCCATTGGACTTTCGTATGTCGAGTTTCTGGCACATATCCATCGACATGTTCAACGCAAAATGGCTTGA
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
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| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc05g055690.1.1 | SL2.50ch05:65228032..65244510 | 1,092 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc05g055690.1 | SL2.50ch05:65228033..65244510 | 16,478 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc05g055690.1.1.1 | SL2.50ch05:65243699..65244510 | 812 | - | n/a |
| exon | exon:Solyc05g055690.1.1.10 | SL2.50ch05:65236563..65236640 | 78 | - | n/a |
| exon | exon:Solyc05g055690.1.1.11 | SL2.50ch05:65236342..65236434 | 93 | - | n/a |
| exon | exon:Solyc05g055690.1.1.12 | SL2.50ch05:65235023..65235077 | 55 | - | n/a |
| exon | exon:Solyc05g055690.1.1.13 | SL2.50ch05:65233792..65233868 | 77 | - | 2 |
| exon | exon:Solyc05g055690.1.1.14 | SL2.50ch05:65233285..65233356 | 72 | - | n/a |
| exon | exon:Solyc05g055690.1.1.15 | SL2.50ch05:65233072..65233155 | 84 | - | n/a |
| exon | exon:Solyc05g055690.1.1.16 | SL2.50ch05:65232831..65232950 | 120 | - | n/a |
| exon | exon:Solyc05g055690.1.1.17 | SL2.50ch05:65232660..65232728 | 69 | - | n/a |
| exon | exon:Solyc05g055690.1.1.18 | SL2.50ch05:65231585..65231662 | 78 | - | n/a |
| exon | exon:Solyc05g055690.1.1.19 | SL2.50ch05:65231171..65231309 | 139 | - | n/a |
| exon | exon:Solyc05g055690.1.1.2 | SL2.50ch05:65243325..65243358 | 34 | - | 1 |
| exon | exon:Solyc05g055690.1.1.20 | SL2.50ch05:65230055..65230219 | 165 | - | 2 |
| exon | exon:Solyc05g055690.1.1.21 | SL2.50ch05:65229403..65229548 | 146 | - | 2 |
| exon | exon:Solyc05g055690.1.1.22 | SL2.50ch05:65229112..65229291 | 180 | - | n/a |
| exon | exon:Solyc05g055690.1.1.23 | SL2.50ch05:65228946..65229034 | 89 | - | n/a |
| exon | exon:Solyc05g055690.1.1.24 | SL2.50ch05:65228674..65228705 | 32 | - | 1 |
| exon | exon:Solyc05g055690.1.1.25 | SL2.50ch05:65228033..65228139 | 107 | - | 2 |
| exon | exon:Solyc05g055690.1.1.3 | SL2.50ch05:65242576..65242806 | 231 | - | n/a |
| exon | exon:Solyc05g055690.1.1.4 | SL2.50ch05:65242259..65242333 | 75 | - | n/a |
| exon | exon:Solyc05g055690.1.1.5 | SL2.50ch05:65241984..65242082 | 99 | - | n/a |
| exon | exon:Solyc05g055690.1.1.6 | SL2.50ch05:65240541..65240652 | 112 | - | n/a |
| exon | exon:Solyc05g055690.1.1.7 | SL2.50ch05:65239300..65239427 | 128 | - | 2 |
| exon | exon:Solyc05g055690.1.1.8 | SL2.50ch05:65238405..65238524 | 120 | - | n/a |
| exon | exon:Solyc05g055690.1.1.9 | SL2.50ch05:65237464..65237544 | 81 | - | n/a |
| intron | intron:Solyc05g055690.1.1.10 | SL2.50ch05:65236641..65237463 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.11 | SL2.50ch05:65236435..65236562 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.12 | SL2.50ch05:65235078..65236341 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.13 | SL2.50ch05:65233869..65235022 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.14 | SL2.50ch05:65233357..65233791 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.15 | SL2.50ch05:65233156..65233284 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.16 | SL2.50ch05:65232951..65233071 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.17 | SL2.50ch05:65232729..65232830 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.18 | SL2.50ch05:65231663..65232659 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.19 | SL2.50ch05:65231310..65231584 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.2 | SL2.50ch05:65243359..65243698 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.20 | SL2.50ch05:65230220..65231170 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.21 | SL2.50ch05:65229549..65230054 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.22 | SL2.50ch05:65229292..65229402 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.23 | SL2.50ch05:65229035..65229111 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.24 | SL2.50ch05:65228706..65228945 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.25 | SL2.50ch05:65228140..65228673 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.3 | SL2.50ch05:65242807..65243324 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.4 | SL2.50ch05:65242334..65242575 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.5 | SL2.50ch05:65242083..65242258 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.6 | SL2.50ch05:65240653..65241983 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.7 | SL2.50ch05:65239428..65240540 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.8 | SL2.50ch05:65238525..65239299 | n/a | - | n/a |
| intron | intron:Solyc05g055690.1.1.9 | SL2.50ch05:65237545..65238404 | n/a | - | n/a |
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