Sol Genomics Network

Solanum lycopersicum gene Solyc06g005500.2

Name Solyc06g005500.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc06g005500	Length 3,183

Description

ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase

Location(s)

SL2.50ch06:525975..529157

GFF source

ITAG_eugene

From BOGAS: 1

Length: 3183

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc06g005500.2.1	SL2.50ch06:525975..529157	1,809	+	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc06g005500.2 SL2.50ch06:525975..529157
TTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGTATTTGATATAAGACTATGAACTCTTTTTTTTCTTCTTGTTTACTTGCACAATTTTTGCAAATTTGAGTCTTTTTGGAGGAGGGGTTCTGTAGAATGGTTTTGTTTGTTTGTTTTCTAATTTTCATTCATATTAGGATGATCATGCCTTTGTTCATGTAAAGTGGCTAGTTTGAGTTCTTGCTAATTTTTTAGTAGTCTCTATTTGGTAATAGTAGTTATCCTGATTAATATATCTTGTTGATAAAAAAAAATTGGGGGTAGGGGTAGCAAAGGGGATTATAAGTTAGTTAATTGAGCTACTAAGATTTAAGATGTTTTGTTGTGTTCTAATGGGGTTAATTGATGGTAATCTAATAAATTGAGAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTGGTGAGTTTTTTTTTTATGTTTGATATGGAGATGTTCGAGTCGGTTTAAGCTTAAAGTGCATTGATTATACCATGAACTCAGAGTAAGCGGAACTAGATCATTTGCTATTGGTTTGGACGAAGCCAGTAGCTTTTGCTTAGTCCCTGTATTTGTATTAGGAAATTCATTAAATATGTATGAAACGTTTTATTGCGAAACCTACTAAAGAAGATGAATTATGAGATTTGAGGCAAGTTCAGAACCCATAAACTTCAAATCTTGATTCTGCCTCTACAAGAATTGTCGTTGTTACTTATTGAGTGCTTTATTAAGTGCTAATACTTTGTTATTTTGAGTGTCATAAGGTTGTCTGAGTTCTGATTTGTATTATGCTTCTATGTTTTTAGGCAGAAGTTAACTATTTGGGGCAGTTTTCTCATCCTCATCTTGTAAAGCTGATTGGCTACTGCTTGGAGGACGAACATCGTCTTTTGGTTTATGAGTTCATGCCTCGGGGCAGCTTGGAAAACCATTTGTTTAGGAGTGAGTACTTTGCCCCTACCATCTTAATTTCAACTCTATGATCATCGACACCTTTGGAGTAATAGTGTTTGTTGTTCTGTAACAGGAGGTTCTTATTTCCAGCCTCTTTCTTGGAAACTACGCTTGAAGGTTGCTCTAGGAGCTGCAAAAGGGCTTGCTTTTCTCCACAGTGCTGAGACTAAAGTGATATATCGAGACTTCAAAACCTCGAATATTTTGCTTGATTCGGTATGTGTCCCCTATGAATTAGATCTTTGTGCAATTGCTTGCTTATTACGAACCAGCTAACGTGTGCTTACTTGGTGCTGTTTCTCTTTTATCGTTATAGAACTACACTGCCAAACTCTCAGACTTTGGATTAGCCAAGGATGGGCCAACAGGCGATAAAAGCCATGTCTCTACAAGGGTTATGGGGACCTATGGATATGCCGCTCCAGAATACATGGCTACTGGTATGGTTTCTTTTCCCCCCTGACTCATGTGTTAGTTTTCTCTCTTGTTCCAACGTGGCCCGACATCCATAGAGTATCCAAATTTAGAATATTAGGTACTGATCAGGACATCTTTACGTCTAAGATGGAACATTTTTTCTTATCCAAGATCCATCTAACATGCAGTTTTCTCTTTTCTTTTTAACTCGCATTCTTATTGTCAAGAACCTCATTAGTCATTCACCTATGATGCATTTGTACTGCACTCCATCCCCTGGGCAACAATTAGTTACTGCTCTTTCTGGGATGGACTTTGATATCTTCATGTTGAGTCTTTAATCAGCCGATACAAACTTGTACTCTTGCCGACTTCCCCTGTTGCGTTCAACCGTTGTCATAATTTACTTGTACCTTGAATTATCTATTAATAACTCAACTCCCTTTGATCCATCTGTTTGATACAGGTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATCAAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGTGTTTGTAACTTTGAGTTTTGCTCACAGCTCACTATATGTTCACTTTTTGACACTAAAGGAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Download sequence region

Download sequence (3.2Kb)

Get flanking sequences on SL2.50ch06

mRNA Solyc06g005500.2.1

Ontology terms

terms associated with this mRNA

cDNA sequence

spliced cDNA sequence, including UTRs

>Solyc06g005500.2.1 ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase
TTCTTATCTTTTCCAAAACCAAAACTACTGACTTTTCTTGAAAAAAGAAGAGGTGGGGTGCTTTCTTTTCTTCAAAAACCTTCTCTTTGTTCTTGAAAAAACAGGACTCATTCATTTTTTTTTGTGTGTTTCTTTCAGAAGAAATAACAAAGACCCTTTCTCTGTTTTCTTCATATTTCAGCTTTGAGCTACTTGGATCTGTTTTTTTTTTTTGAATATACAAGTAGTTTGTGTGTTCTGGGGTCTACAGAAGAAGGAGAAGCTAAAAGGGGTGATTTTGTTTTTTGTTTGTTGTTGTTCTAATGGGGATATGTTTGAGTGCTAGAATTAAAGCTGAAAGCCCATTTCATACAGGGGTAAGAATTATTGCAGGGCTAAATTCAAGATCTGTTAGCATAGATGGTGGTGATAGTAATTCAAGCTCCAGGGTTCCATCAACTACTAGAAGTGAAGGAGAGATATTGCAGTCTCCCAATTTGAAGAGCTTTAGTTTTTCTGATCTCAGAACAGCCACTAGGAACTTTCGTCCCGATAGTGTGCTGGGAGAAGGTGGATTTGGATCAGTTTTTAAAGGGTGGATCGATGAGAACACGTTCGCAGCTACCAAGCCTGGGACAGGTGTGATCATTGCTGTGAAAAGGCTTAATCAAGAAGGTTTTCAAGGTCACAGGGAATGGCTGGCAGAAGTTAACTATTTGGGGCAGTTTTCTCATCCTCATCTTGTAAAGCTGATTGGCTACTGCTTGGAGGACGAACATCGTCTTTTGGTTTATGAGTTCATGCCTCGGGGCAGCTTGGAAAACCATTTGTTTAGGAGAGGTTCTTATTTCCAGCCTCTTTCTTGGAAACTACGCTTGAAGGTTGCTCTAGGAGCTGCAAAAGGGCTTGCTTTTCTCCACAGTGCTGAGACTAAAGTGATATATCGAGACTTCAAAACCTCGAATATTTTGCTTGATTCGAACTACACTGCCAAACTCTCAGACTTTGGATTAGCCAAGGATGGGCCAACAGGCGATAAAAGCCATGTCTCTACAAGGGTTATGGGGACCTATGGATATGCCGCTCCAGAATACATGGCTACTGGTCATTTAACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTCCTCCTTGAAATGCTGTCAGGTCGTAGGGCAATCGACAAGAATAGACCATCCGGAGAACACAATCTAGTGGAGTGGGCGAAACCTTACCTAGGTAACAAACGTAAGGTCTTCCGTGTTCTGGATACCCGTCTTGAAGGCCAGTATTCAATGGAGGTGGCGAGTAAAGTAGCTAACCTTGCCCTGCGGTGCCTATCCAAAGATCCTCGGTTTAGACCAAGCATGAGTGACATTGTTAAAGAACTGGAGCAACTTTATCAACAATCTAAAGATTCAGGAAATACTCGCAGCCACGCTAGCAACCGACCTAGACCACGTAGACGAAGTGCTGGTGATGTTGCTAATAGAAATCCTTCAGTTGCTTATCCGAGACCGTCTGCTTCTCCCCTTTACGCTAAATAATTAAACAAATGATTGAAAGATGCCTTAATTTCTTGTTTTTTTTGTCTTATATGTGTTTATCAAGCTTGATAAGTAGTTGAGGCTGATGAAGAACCTCTGCACATTTGCAGTATCAGCTGGCTGATTGTACAGTTGTTTTTGGCTAATGTATTGAATCTATACTTTCTGTAGGTCCTGAATGTGTTTGTAACTTTGAGTTTTGCTCACAGCTCACTATATGTTCACTTTTTGACACTAAAGGAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Download sequence (1.8Kb)

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc06g005500.2.1	SL2.50ch06:526276..528874	408	+	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc06g005500.2	SL2.50ch06:525975..529157	3,183	+	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc06g005500.2.1.1	SL2.50ch06:525975..526328	354	+	n/a
exon	exon:Solyc06g005500.2.1.2	SL2.50ch06:526592..526596	5	+	n/a
exon	exon:Solyc06g005500.2.1.3	SL2.50ch06:526694..527014	321	+	2
exon	exon:Solyc06g005500.2.1.4	SL2.50ch06:527401..527536	136	+	n/a
exon	exon:Solyc06g005500.2.1.5	SL2.50ch06:527622..527764	143	+	n/a
exon	exon:Solyc06g005500.2.1.6	SL2.50ch06:527865..527988	124	+	2
exon	exon:Solyc06g005500.2.1.7	SL2.50ch06:528432..529157	726	+	n/a
intron	intron:Solyc06g005500.2.1.1	SL2.50ch06:526329..526591	n/a	+	n/a
intron	intron:Solyc06g005500.2.1.2	SL2.50ch06:526597..526693	n/a	+	n/a
intron	intron:Solyc06g005500.2.1.3	SL2.50ch06:527015..527400	n/a	+	n/a
intron	intron:Solyc06g005500.2.1.4	SL2.50ch06:527537..527621	n/a	+	n/a
intron	intron:Solyc06g005500.2.1.5	SL2.50ch06:527765..527864	n/a	+	n/a
intron	intron:Solyc06g005500.2.1.6	SL2.50ch06:527989..528431	n/a	+	n/a

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Related views

Genetic loci

Tomato locus tpk1b (tomato protein kinase 1b)

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17836228%2Fdetails feature 17836228

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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