Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Solanum lycopersicum mRNA Solyc06g008970.2.1

mRNA details  
Name
Solyc06g008970.2.1
Type
mRNA
Length
2,528
Organism
Solanum lycopersicum
Description
ATP-dependent DNA helicase Ta0057 (AHRD V1 **** XPD_THEAC); contains Interpro domain(s) IPR001945 Xeroderma pigmentosum group D protein
Location(s)
SL2.50ch06:2910891..2919396
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0016818
  • GO:0005524
  • GO:0006139
Length
8506
Nb exon
12
Sifter term
GO:0043141
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc06g008970.2.1 ATP-dependent DNA helicase Ta0057 (AHRD V1 **** XPD_THEAC); contains Interpro domain(s) IPR001945 Xeroderma pigmentosum group D protein

TTTTTTCACTCAGAAAACAAGAAAATCAGCAAACCCCAGAAGATGAAATTCCAATTAGAAGATGTAACAATCTATTTTCCATATGATAACATATATCCAGAACAGTATCAATACATGTTAGAACTCAAAAGAGCTTTAGATGCAAAAGGGCATTGTCTTCTTGAAATGCCTACAGGAACTGGTAAAACAATTGCTTTACTTTCTTTAATTACAAGTTACAGACTTTCAAAACCATCAAATCCAATTAAGCTTCTTTATTGTACAAGAACTGTACATGAAATGGAGAAAACATTAGCTGAGCTTAAATTGTTGTATAATTATCAGTTACAGCATTTCGGGCCGGGGGCTCGAATGCTGGCAATTGGGTTGTCATCAAGAAAGAATTTGTGTGTGAACCCATCTGTGGTTTCTGCTGAGAATAGGGATTCTGTTGATGCTGGTTGTAGGAAACTTACTGCTAGTTGGGTTAGAGCAATTGCTGTTGAAAATCCAAATATTCCTACTTGTTCCTATTATGAGAATTATGATACTGCTGATAAGGCTGGTACTTCCACTTTGCCTGCTGGAGTTTATACTTTGCAGGAGCTAAGATTGTTTGGTAAGGAGAAAGGCTGGTGCCCGTACTTTCTGGCGAGGCATATGGTGCAGCAGGCAAATGTTGTGGTTTACAGCTACCAATACCTTCTTGATCCCAAGGTTGCTGGTATCATATCAAAGGAGATGGAGAGAGAGTGTGTCGTAGTGTTTGATGAGGCCCATAATATAGACAATGTATGTATTGAGGCACTTAGTGTCAGTGTGAGGAAGCAAACACTTGAAGGGGCAACAAGGAATCTCAGTAGGATGTCTAATGAAATTGAAAGGCTGAAGGCTACTGATGCTGGTCGATTGCGGGTTGAGTATAATCGTCTAGTTGAGGGTCTAGCTCAAAGACTGCCCGCTCAGGATGTATGGCTTGCTAATCCCGCCTTGCCTGATGACATCATGAAGGAGGCAGTGCCAGGAAATATAAGGAAAGCAGAGCATTTCTTGTCTGTTTTGCGAAGATTTGTCCAGTATCTTAATGGGCGTCTGGAGACTGATAATGTAGAAAAAGAAGGCCCTGTTGCCTTTGTTGCTTCTATTAATACACAAGTTGGAATTGATCAAAAGATGTTAAAATTTTGTTATGATAGGCTTCACTCCCTTATGTTAACCCTGGAGATTACTGATACAGATGAGTTTCTGCATATACAAACTGTTTGTGACCTTGCCACGTTGGTAGGGACGTACGCTCGGGGCTTTTCCATTATAATTGAACCATATGACGAGAGGATGCCACATATTCCTGATCCTGTCCTGCAGCTTACCTGTCACGATGCCTCTCTTGCCATAAAGCCTGTTTTTGAACGATTCCAATCTGTTGTGATTACCTCGGGGACCCTCAGTCCAATTGATCTCTATCCTCGTCTTCTCAATTTTAATCCGGTAGTAAGTCGAAGCTTCAAGATGTCACTGACAAGGGATTGCATATGCCCAATGGTCCTTACCCGGGGAAGTGATCAGCTTCCTGTAAGCACTAAGTATGACCTGAGAAGCGATCCGGGCGTCGAGAAAAATTATGGGAAGCTTTTGCTAGAAATGGTTTCTGTTGTTCCAGATGGGGTTGTCTGTTTTTTTGTCAGTTACTCTTATATGGATGGAATTGTCAACAGTTGGCATGAATCAGGAATATTAAAGGATATAATGCAACATAAACTTGTATTTATCGAGACCCAAGATGTTGTAGAGACTACATTGGCTTTGGATAATTATCGCAAGGCTTGTGATAGTGGGAGGGGTGCAGTTTTCTTCTCAGTTGCTAGGGGAAAAGTGGCTGAAGGTATAGACTTTGATAGACACTATGGGAGGCTTGTTATCATGTTTGGCGTTCCATTCCAATACACATTAAGCAGAATATTGCTTGCACGATTGGAATATCTGAGGGAGACCTTCCAAATAAAAGAGGGCGATTTTCTGACTTTTGATGCTTTGAGGCAAGCTGCTCAATGTGTGGGTCGAGTTATTCGTTCAAAGGCAGATTATGGCATGATGATTTTTGCTGATAAAAGATATAGCCGTCATGATAAGCGCTCCAAGTTGCCTGGATGGATACTTTCACATTTACGTGATGCTCACCTGAACTTAAGTACAGACATGGCCGTGTATATAGCAAAAGAGTTTTTGAGAAAAATGGCTCAACCATATGATAAGAACGGTGCTCTGGGCAAGAAAACTCTACTGTCACAAGAAGACTTGGAGAATATGATCACCGGCCCTGATGGGGAAATGTTGCTTTAAGTGCCAGTACTAGGTGAGAAATCATTTTTGCTAATCTGTTCCCCGGAATTCTCAGTGTTCTATATGTGGAACAGCACGATTACTACATCCGTTAAAATTTCAAGTGAACTGATTCCTGTTAAAGATTTGTAGCAACCTTCAGTTTTGGGCGACTTCACTACTTTTAGAGCTGACTTAATTGGAATTTCATGAAGCTTGTACATTTCCGG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc06g008970.2.1SL2.50ch06:2911099..2919354759-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc06g008970.2SL2.50ch06:2910891..29193968,506-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc06g008970.2.1.1SL2.50ch06:2918815..2919396582-n/a
exonexon:Solyc06g008970.2.1.10SL2.50ch06:2912164..291224077-1
exonexon:Solyc06g008970.2.1.11SL2.50ch06:2911785..2911893109-n/a
exonexon:Solyc06g008970.2.1.12SL2.50ch06:2910891..2911219329-n/a
exonexon:Solyc06g008970.2.1.2SL2.50ch06:2917618..2917898281-1
exonexon:Solyc06g008970.2.1.3SL2.50ch06:2916692..291676877-2
exonexon:Solyc06g008970.2.1.4SL2.50ch06:2916194..2916597404-n/a
exonexon:Solyc06g008970.2.1.5SL2.50ch06:2915448..2915641194-1
exonexon:Solyc06g008970.2.1.6SL2.50ch06:2915094..2915274181-n/a
exonexon:Solyc06g008970.2.1.7SL2.50ch06:2914831..2914955125-1
exonexon:Solyc06g008970.2.1.8SL2.50ch06:2912621..291271090-1
exonexon:Solyc06g008970.2.1.9SL2.50ch06:2912323..291240179-n/a
intronintron:Solyc06g008970.2.1.10SL2.50ch06:2912241..2912322n/a-n/a
intronintron:Solyc06g008970.2.1.11SL2.50ch06:2911894..2912163n/a-n/a
intronintron:Solyc06g008970.2.1.12SL2.50ch06:2911220..2911784n/a-n/a
intronintron:Solyc06g008970.2.1.2SL2.50ch06:2917899..2918814n/a-n/a
intronintron:Solyc06g008970.2.1.3SL2.50ch06:2916769..2917617n/a-n/a
intronintron:Solyc06g008970.2.1.4SL2.50ch06:2916598..2916691n/a-n/a
intronintron:Solyc06g008970.2.1.5SL2.50ch06:2915642..2916193n/a-n/a
intronintron:Solyc06g008970.2.1.6SL2.50ch06:2915275..2915447n/a-n/a
intronintron:Solyc06g008970.2.1.7SL2.50ch06:2914956..2915093n/a-n/a
intronintron:Solyc06g008970.2.1.8SL2.50ch06:2912711..2914830n/a-n/a
intronintron:Solyc06g008970.2.1.9SL2.50ch06:2912402..2912620n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17838866%2Fdetails feature 17838866
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)