Sol Genomics Network

Solanum lycopersicum gene Solyc06g060720.2

Name Solyc06g060720.2	Type Gene	Organism Solanum lycopersicum
Synonyms / aliases Solyc06g060720	Length 4,540

Description

Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein

Location(s)

SL2.50ch06:38733517..38738056

GFF source

ITAG_eugene

From BOGAS: 1

Length: 4540

Genome Viewer

Related features

Features that are parts of this gene

Type	Name	Location	Length	Strand	Phase
mRNA	Solyc06g060720.2.1	SL2.50ch06:38733517..38738056	1,054	-	n/a

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Genomic sequence

unprocessed genomic sequence region underlying this gene

>Solyc06g060720.2 SL2.50ch06:38738056..38733517 (sequence from reverse strand)
GTCGGCTTTTCCGCCAAAAAATACGTCATTATACTACCCACACCCTCTATATAAATTAAATCTCAATTTTTATTCATTATCTTTGATTCAAAAAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTGGCCAACCACCAAACGATATAGTGCAGGAACTTGCTCCAGACTTTGATATATCAACTCTTGGACAACTGTAAGTGCTCTAGCATCTTCAGAATTCCATTCAAATTAAGTTGTCTGGGTGTTGATCTATCGGTAGCAGTTAATTGCTGGAATCATGCCCTTTTTCCTTGTTTTACCTGGAAATTTTAGGCATTTAAGCTTTTGGCCTATACAATTTGCCTAAAGAGGATGGACGTAAAGCATGCATGCAAGTATCTTTTATAGTCTATATTAGATATAAGCGCTGATCATGTGTGTCAACTGTATTACCTTATGATAGGATCCTATTAAAGCCGGAAAGTTCCACTTCTTGGCTCAAACTTTTTGACTAAACAAACCATTCCTACAAAACTCAACTGCAGTCTGATCAAGATATCCTTTTTTCTTGTGATACCGTTAACACCGCTTTATGTGGACCTTAGATTAAACCACCATAAGATTTCTGTTAATCTTGACGCTGAAGGGTGGAGATATTAAGTCTCAGTCCCATTGTCTCAATTTATGTGACACTCTTTTTTTAGTCTGTCCCAAAAAGAATGTCACCTTTTTATTATTAGAAACAACTCAACTTTAATATTCCCCAATTGCCCTCAATAAAATAAGTTGTAGCCACAAAAATGTCTAAGGTTTGTTTTATACCCACAATTTTCTCTCTTTTTCTTGAACTTTGTGCTTTAGTCAAAGGGTGCCACATAAATTACGACAGAGGGAGTACTATTTACTGGGAAAACCTATTGAGGCAAGTTAATCAAACAATACAGATGAGGAAAACAATATTTTGGTGGTTGCACAATGGTTGCAATTTTCAACTAGGATGTTAATGGACGTGCTTGTTAATACCTCCAGCTTCAACAGTAAAAAGTCCATGCAAATATGGAAGCGTGCAGATATTTGTAAGGGTTTTTGCTGATTTGCTTTAACCTTATGGACAGCAAGCATGTGCACTTCTCGACCACCCTTTCTCTTCCCTCTTCTGTAGAGAGCTACATTATGAAGTTCAAAGTTATCTTTGGACTGTATCCTGTGTGACAACTATCCCAGTTTCAAAAGGGAAAACAGCTGGGTAAAGAACCTTGTGATACATTATAAAGGAAGAACAAAATTGATGGCTTATGTTAGAAAATGAGGAGAATTCCTCAGTCTATCCACCATCTTTTTGATGATATCTGAATCTTTGGTGCTAACCCACGTTTCTTGGAAATGAGCCCTCTTCTTCATTTGAAGACGTTTTTGTTTTCATGTCTTATCACTGTATCTGCATGAAAATGAAACCCCTGTAACTGTTTTGATGTTTCGAAGTATCTTTAATTGTGATTGAGCAGTTTTTCTTCTTATGGTTTACAGATCACCGGAGATGCTCGAGTCCCAACAGAACTGCTGTATTATGTGAAGACACTGGGCTCGACCATCCTGATGTCCACCTTGCTCCTTAAGTTGGTTCTTTTACCATTGTAAACAATATACATATAGAACACGGGTTATTGTTTGTATGGAATTTGATTGTGGTTCTCATCTTTCTAATAAGCATTGATATGCATTTTTTTCTTTCCTTTTGGCGATCGTTATTGCATGCCTTTCCATAAATGACATGCTTCAAGATTCTGGAGATGGTGGACAAAGCATTGACAATTCTTTAAATGCATGAATAAG

Download sequence region

Download sequence (4.5Kb)

Get flanking sequences on SL2.50ch06

mRNA Solyc06g060720.2.1

Ontology terms

terms associated with this mRNA

GO:0005515 – protein binding

cDNA sequence

spliced cDNA sequence, including UTRs

Protein sequence

translated polypeptide sequence

Related features

Features that derive from this mRNA

Type	Name	Location	Length	Strand	Phase
polypeptide	Solyc06g060720.2.1	SL2.50ch06:38733776..38737917	249	-	n/a

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Features this mRNA is a part of

Type	Name	Location	Length	Strand	Phase
gene	Solyc06g060720.2	SL2.50ch06:38733517..38738056	4,540	-	n/a

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Features that are parts of this mRNA

Type	Name	Location	Length	Strand	Phase
exon	exon:Solyc06g060720.2.1.1	SL2.50ch06:38737875..38738056	182	-	2
exon	exon:Solyc06g060720.2.1.2	SL2.50ch06:38737623..38737671	49	-	1
exon	exon:Solyc06g060720.2.1.3	SL2.50ch06:38737229..38737520	292	-	n/a
exon	exon:Solyc06g060720.2.1.4	SL2.50ch06:38735136..38735452	317	-	1
exon	exon:Solyc06g060720.2.1.5	SL2.50ch06:38733618..38733822	205	-	n/a
exon	exon:Solyc06g060720.2.1.6	SL2.50ch06:38733517..38733525	9	-	n/a
intron	intron:Solyc06g060720.2.1.2	SL2.50ch06:38737672..38737874	n/a	-	n/a
intron	intron:Solyc06g060720.2.1.3	SL2.50ch06:38737521..38737622	n/a	-	n/a
intron	intron:Solyc06g060720.2.1.4	SL2.50ch06:38735453..38737228	n/a	-	n/a
intron	intron:Solyc06g060720.2.1.5	SL2.50ch06:38733823..38735135	n/a	-	n/a
intron	intron:Solyc06g060720.2.1.6	SL2.50ch06:38733526..38733617	n/a	-	n/a

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Related views

Genetic loci

Tomato locus Solyc06g060720

http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17848573%2Fdetails feature 17848573

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Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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