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Solanum lycopersicum mRNA Solyc06g066670.2.1

mRNA details  
Name
Solyc06g066670.2.1
Type
mRNA
Length
3,468
Organism
Solanum lycopersicum
Description
ATP-dependent DNA helicase Ta0057 (AHRD V1 *-** XPD_THEAC); contains Interpro domain(s) IPR013020 DNA helicase (DNA repair), Rad3 type
Location(s)
SL2.50ch06:41887755..41894462
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0008026
  • GO:0016818
  • GO:0005524
  • GO:0006139
Length
6708
Nb exon
10
Sifter term
GO:0043141
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc06g066670.2.1 ATP-dependent DNA helicase Ta0057 (AHRD V1 *-** XPD_THEAC); contains Interpro domain(s) IPR013020 DNA helicase (DNA repair), Rad3 type

ATGGAAGAGAGAAGGGAATTTCCGGCATTTCCGTACGAACCCTATTCCATTCAGCTTGATTTCATGAACGCCCTTTACCAATCCCTCAATAAAGGCGGCGTTGCCATGCTCGAAAGCCCCACTGGGACTGGTAAAACGCTTAGTATAATTTGCAGTGCTCTTCAATGGCTTGTTGATAAAAAGCAACATCAGAAAACCCAGATGGATTCTTCTTTGAATTTAGGTGGGAATCAGGAAGATCAGTTGGGGGTTGATGATGAACCAGATTGGATGAGGGACTTTGTCATTAACAAAGATACCAAATCGCCTGAGAAGAAGACAAAGGAAAAGAAGCAAATGGGGTTCAACAAAAAAATTGATAGGAAAGGAAAAAGGGACAATGTGAGAGATTTAATTACTAACGGGGGTGGGAAGGATGAAGAAACTGACACTGAAAAGGTAAAGAATTTACTGACAAAACATGAGGTTGAGGGAATGGATGAAGAGGAGTTTTTGGTTGAAGAGTATGAGAGTGAAGATGAAAATGGAGGGCGATCGAAAAGGAAGGGTGGTGGGGTGCCGGTTAATTCCTCGAGTGAGGAAGAAAAAGATGAAGATAACATGGAAGATGAAGAGGATGAGGCTAGACCCAAAATTTACTTCTGTAGCCGGACACATTCACAACTTTCACAGTTCGTAAAGGAGTTAAGGAAGACTAGATTTGCTGATGAAGTAAAGGTTGTATGCTTAGGATCTAGGAAGAATTTCTGCATTAATAAAGATGTATTGAAGTTAGGCAGCTCCACCCAGATAAATGAGAAATGTTTGGAGCTTCAAAAAAGTAGGAAGAAGGAAATTTCTAAAATATCAAAGACAAAGAACATCAGAGCTTGTGGCAGAGCAGGAAGGTCCAAGACTTCCTCAGGATGCCCAATGCTTAGGAATCAGAAAAGAGGAAAAGAATTTCGAAGTGAGGTTTCTCAACAAGGGCCCTTGGATATTGAGGATCTTGTTCAGATTGGAAATGACTTAAAAATTTGCCCTTACTATGGCTCAAGAAGCATGGTCCACACAGCAGATCTTGTGGTTCTTCCTTATCAATCGCTTCTTTCAAAATCATCGCGTGAATCACTTGGTTTAAGTTTAAAAGATAGTGTTGTTGTCATAGACGAAGCTCATAATTTAGCTGATTCTCTCGTCAGCATGTACAACGCAAAAATTACACTGTCACAGTTGGAACTTGTGCATTCACACTTGGAGAGTTACTTCATACGCTTTCGCAATCTGCTAGGGCCAGGCAACCGAAGATATATTCAAATAATGATGGTCCTTACTCGGGCTTTTCTACAAGTTCTGCGTGATGAGAACTGTCAAAGCACCTTTGACCCCCTTTGTAATGCTGAGCGAAGTAAAAGTGGCTTTGAGTCATCCACGGCGATAAACGAGTTTCTATTTGCCCTCAATATTGACAACATAAATCTGTATAAGCTCTTGTTGTATATAGAAGAAAGCAATATTATGCACAAGGTATGTGGATATGGACATAAATTAGCACTCTCCGTAGAAGTTTCAGGATTGAAAAATGACGATCAAAGCAGTCATGATGAAAGTGCATTATCTGGTTTCCAAGCATTAGTTAACATGTTACTGTCACTAACAAATAAAGATGGTGATGGAAGAATAATAATATCAAGGCCAAGGCCAAAATGCTCAATGCAACAAGGAGGGTATTTGAAATATGTCATGCTCACAGGAGAAAAGATATTTTCTGAGATCTTGAATCAAGCTCATGCTGTCATATTTGCTGGCGGGACTTTGCAACCTATAGAGGAAACAAAAGAACGCCTGTTTCCTTGGTTACCACCGGATCAGTTGCATTTCTTTTCCTGTGGTCATATCATCCCATCTGCAAACATTCTACCAGTTGTTGTTCCTCAGGGGCCTTCTGGCCACTCCTTTGATTTTAGTTACAGCGCCAGAAGCTCATCAGTCATGATAAAAGAACTAGGGCTTTTGGTCTCCAATTTGGTAAATGTAGTTCCTGAAGGCATGGTTCTTTTCTTCTCATCATTTGACTACGAAGGCCAGGTCTATGATGCATGGAAGGAGTCGGGCATCATTGGAAGAATTATGAAAAAGAAGCGTATATTTAGAGAACCTAGAAGAAGTACAGATGTGGAAACTGTTTTGAAGGAATACAAGGAAACAATTGATGCACTGTCCCATAGAAGTTCTAAGCGGGATCCTGAATCAAGAAATGGTGCAATTCTCCTTGCTATTGTGGGTGGGAAAGTATCAGAAGGTATCAACTTCAGCGATGGGATGGGTCGATGTATAGTCATGGTTGGATTGCCCTATCCTAGTCCTGCTGACATCGAGTTGATGGAGAGGATCAAACATATTGAAGGATTTGATACTTCTAGTGGTAAGAACACCAAATTTCAGGCTGAAAGAAGCTGGTATAATGGAGATGCTCAAGCTGGGCTGGACATCCTAAAAAGCTGCAAGCATAGAGGGAAGCAGTATTATGAGAATCTTTGCATGAAAGCTGTGAATCAATCAATTGGTAGAGCAATTCGGCATATTAACGACTATGCTGCCATCCTATTAGTTGATAAACGCTATACATATGATCCTTCTGAAAGAAGCTCCTCACAGTCAACCAACAAGCTGCCCCAGTGGATTAAAGGTCGGCTTGTTTCTGGAACAAAGAATTATGGAGAACTCCAGAGGCTGCTGCATCAATTCTTCAAGTTCCACAAAGGCAAAGAGGATAACCACAACCGAATTCCAAACAGCATTATTCAAGAATTGGACGATTACTACAGAGACTTTCCTCAACAATGGGAATGTAGTAACCAAAACGAAGTTCCACAGAGAAAGAGCATACGCGAAGAATCAGTAAACAACACGAGGAAAGTACAGAAAGAAAAAATGGAAGATGCATTGCTTCGAAACACAAGTAAAGGTGAGGTATTAGTACAGAAGATGAAGGAACTAGAGATGATGGATGAGGAAGATTTGGATCAAATGATGGACATAAAAGAAGTTCTCTACTACTACTCTTACCTAAAATGTCCAGTTTACCTTGACATTGTTGACAGGTATTTCATGGACATGTATAATGAGTTATCACTTCCACAGACATTCATCAATGTCAACAGTTAAATGTTAAGTCTTGGTCACATTAAGCTCTAGAAACTACAGAGAAAATGTTTTTGCTTACTAATGAAAGTTTTCGAGCTTAGCTAACTTCTTTTGTCTGTTAATTGCCATGCCATGTACTTCTATATTGAAAAATTTCAGAAAACCTCATTAGATCTGAGTTAATTTCTCAGACGATCATTCAACTAGTAGTTATTACCTCAGAAAATTGGAATCAAGAAGTAAAGTGACTTTCAGAGTTGACATTTATTAATTGAATGACCATATGAGGAATCAACCCTATTCGATTTGTATTTCTTGAGCATGTTTCTTTACAATGTCAAA
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc06g066670.2.1SL2.50ch06:41887754..418941411,049+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc06g066670.2SL2.50ch06:41887755..418944626,708+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc06g066670.2.1.1SL2.50ch06:41887755..41887878124+n/a
exonexon:Solyc06g066670.2.1.10SL2.50ch06:41893754..41894462709+1
exonexon:Solyc06g066670.2.1.2SL2.50ch06:41888148..41888783636+2
exonexon:Solyc06g066670.2.1.3SL2.50ch06:41888908..4188900598+2
exonexon:Solyc06g066670.2.1.4SL2.50ch06:41889494..41889847354+n/a
exonexon:Solyc06g066670.2.1.5SL2.50ch06:41889997..41890290294+n/a
exonexon:Solyc06g066670.2.1.6SL2.50ch06:41890379..41890624246+n/a
exonexon:Solyc06g066670.2.1.7SL2.50ch06:41890715..41890936222+n/a
exonexon:Solyc06g066670.2.1.8SL2.50ch06:41891167..41891737571+n/a
exonexon:Solyc06g066670.2.1.9SL2.50ch06:41892028..41892241214+2
intronintron:Solyc06g066670.2.1.1SL2.50ch06:41887879..41888147n/a+n/a
intronintron:Solyc06g066670.2.1.2SL2.50ch06:41888784..41888907n/a+n/a
intronintron:Solyc06g066670.2.1.3SL2.50ch06:41889006..41889493n/a+n/a
intronintron:Solyc06g066670.2.1.4SL2.50ch06:41889848..41889996n/a+n/a
intronintron:Solyc06g066670.2.1.5SL2.50ch06:41890291..41890378n/a+n/a
intronintron:Solyc06g066670.2.1.6SL2.50ch06:41890625..41890714n/a+n/a
intronintron:Solyc06g066670.2.1.7SL2.50ch06:41890937..41891166n/a+n/a
intronintron:Solyc06g066670.2.1.8SL2.50ch06:41891738..41892027n/a+n/a
intronintron:Solyc06g066670.2.1.9SL2.50ch06:41892242..41893753n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17852859%2Fdetails feature 17852859
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