Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Solanum lycopersicum mRNA Solyc06g069370.2.1

mRNA details  
Name
Solyc06g069370.2.1
Type
mRNA
Length
1,937
Organism
Solanum lycopersicum
Description
Transcription factor protein (AHRD V1 *-** Q4H2R4_CIOIN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location(s)
SL2.50ch06:43120671..43125477
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0045449
Length
4807
Nb exon
11
Sifter term
  • GO:0005515
  • GO:0003700
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc06g069370.2.1 Transcription factor protein (AHRD V1 *-** Q4H2R4_CIOIN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding

ATGGAGTTACCTCAATCCAGGCCTTTTGGAACAGAAGGGAGGAAGACGACGCATGATTTTCTTTCACTATATTCACCAATTGAACAAGATCCAAGACCTTCTCAAGGTGGCCACCTACAAACTCATGATTTCTTTCAACCTCTAGAACAAGCAAGGAAGACTGTTGGGAAAGAAGAAAATAAAGTTGAGGTAGAGGCTATAGAAAAGCAGCCTCCATCAGCAGCACATATTCTTCCTGGTGGCATTGGCACATATAGCATTTCTTATTCACAGCAAAGGTTTCCAAAGCCAGAAGCAAACACATTTGCTGTTACACAAACTAGCAGTACAGATAGAGACGATAGAAACTCAAACTGCAGTTCTTACTCAGGAAGTGGTTTTGCATTATGGAATGAATCTGCCATGAAGAAGGGAAAGACTGGGAAGGAGAATCTCGCTGGAGATAGACATGTCGTAAGAGAAGCAGGTTTAAACATTGGAGGAGGGAAATGTACGACATCATTAGAACGGCAATCACAATTGTCTTCAAATCATAATCATAACACTGCAACCTTGAGCTCACACTCATCTCCTCAGCAACCATCAGCAATGGAGAATCAGAGTTTCATACATATGATAACATCGGCTAAGAATGCACAGGAAGATGATGATGACGACGAAGAAGAATTTGTTGTTAAGAAAGAGTCACCTTCACCATCCAGAGGCAATTTATCAGTAAAAGTCGATGGGAAAAGCAGTGATCAGAAGCCAAATACTCCACGCTCGAAGCACTCAGCAACAGAGCAAAGAAGAAGAAGCAAGATCAATGACAGATTTCTGAAGTTGAGAGAGATCATCCCTCACAGTGACCAGAAGAGAGATAAAGCATCATTCTTGCTGGAGGTTATCGAATATATTCAATTCCTACAAGAGAAAGTGCACAAATATGAGGGATCCTACCAAAGTTTGGATAGTCAACCTTCAACATTACCTTGGAATAAGTGCCATAGTATGGCTCAAGGTTTCATTGATCATTCTCAAGGCACAAACAGTGCATCTAGTCCTGCACTTATACGTGCTGCAAAGTTTGACGAGAACAAAATTGGAATCTCTGCTACAGGGCCTGTCACTGAACAGACACAAGAGCCAAACAGAACTTCCAGTGTGAAAGAAAGCAGTTTTCTGTCTGAATTGACAAACAGGGCCGCAACACTTTGTATGCAACCAAGCACATTTCCGTTTGGTGGACATACTAGCATAGCATCGCTAAAGTCAATACTGGCACCTGATGCTGGCTCGTTGGAACTGAAATCTCAGCCTCAATGTCCATCAAACAGATTGAATATGGCTAATTATGCTGTTACAAATGACAAGCTAAAAGGTCAAGAGGTTTCTACAGAAAGTGGTACGCTCAGCATCTCCAGTGTCTATTCTCAAAGATTGATGAACACACTGAAACAAGCATTGCAGAGTTCCGGAGTAGACTTGTCACAAGCCAACATGTCAGTGCAAATTGATCTCGCCAAAAGAGCTGATGATAGATCAAATGCTTCAACATCCAATTTTAAGGGTGACAACATTTCCTCAAGAAATCAACCAACTCCACTATTCATTGATACAAGCACAAGAGAGGAGTCTGTCCATGCCTTCAAACGGCTCAAAACAAGTTAAAACCAAATTTAACACACAAAAGTTTCTTTTGCAATTTATTCAACTTAAAAAATTTCCTTCCCCTTCTGATTCTGAAGGGATATTCATGTATACATCTGGTATAGAAAATCTCCCCTTATCAGATCATAAGCTACTGTAAATGTAATTCATTTTTTTTTCCTTTTCGATTGTTTGGCTGCACAGAATTCGATATTTATTACTTGTAGTGAACTATCAAGAAATCATGTATCACTATTGAGGCTTCCATGCTCATGTTGAGAAGCTGCTTTTTAATACAATTCTTCCAT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc06g069370.2.1SL2.50ch06:43120670..43125190550+n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc06g069370.2SL2.50ch06:43120671..431254774,807+n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc06g069370.2.1.1SL2.50ch06:43120671..4312070737+n/a
exonexon:Solyc06g069370.2.1.10SL2.50ch06:43124875..43125004130+1
exonexon:Solyc06g069370.2.1.11SL2.50ch06:43125089..43125477389+n/a
exonexon:Solyc06g069370.2.1.2SL2.50ch06:43120838..4312090669+2
exonexon:Solyc06g069370.2.1.3SL2.50ch06:43122134..43122487354+2
exonexon:Solyc06g069370.2.1.4SL2.50ch06:43122704..43122818115+2
exonexon:Solyc06g069370.2.1.5SL2.50ch06:43122914..43123041128+1
exonexon:Solyc06g069370.2.1.6SL2.50ch06:43123125..43123233109+2
exonexon:Solyc06g069370.2.1.7SL2.50ch06:43123585..4312365470+1
exonexon:Solyc06g069370.2.1.8SL2.50ch06:43123734..4312382693+n/a
exonexon:Solyc06g069370.2.1.9SL2.50ch06:43124228..43124670443+n/a
intronintron:Solyc06g069370.2.1.1SL2.50ch06:43120708..43120837n/a+n/a
intronintron:Solyc06g069370.2.1.10SL2.50ch06:43125005..43125088n/a+n/a
intronintron:Solyc06g069370.2.1.2SL2.50ch06:43120907..43122133n/a+n/a
intronintron:Solyc06g069370.2.1.3SL2.50ch06:43122488..43122703n/a+n/a
intronintron:Solyc06g069370.2.1.4SL2.50ch06:43122819..43122913n/a+n/a
intronintron:Solyc06g069370.2.1.5SL2.50ch06:43123042..43123124n/a+n/a
intronintron:Solyc06g069370.2.1.6SL2.50ch06:43123234..43123584n/a+n/a
intronintron:Solyc06g069370.2.1.7SL2.50ch06:43123655..43123733n/a+n/a
intronintron:Solyc06g069370.2.1.8SL2.50ch06:43123827..43124227n/a+n/a
intronintron:Solyc06g069370.2.1.9SL2.50ch06:43124671..43124874n/a+n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17854893%2Fdetails feature 17854893
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)