Solanum lycopersicum mRNA Solyc06g071030.2.1
 mRNA details
|
| Name | Type |
Length
2,880
|
Organism |
| Description |
|
Location(s)
SL2.50ch06:43627535..43636469
|
| Ontology term(s) |
|
GFF source
ITAG_eugene
|
- Interpro2go term
- GO:0009058
- Length
- 8935
- Nb exon
- 15
- Sifter term
- GO:0008909
| mRNA sequence
| spliced mRNA sequence, including UTRs |
>Solyc06g071030.2.1 Isochorismate synthase (AHRD V1 **** B0CN79_SOLLC); contains Interpro domain(s) IPR005801 ADC synthase IPR004561 Isochorismate synthase
ATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGACTAGCTTAAAAGTTGGTCAAAGTTACTTTTAATTTTGTTTTTATTTCTGGAAGTGTTCGGTAAATATGAAACATAATTTAAAGAAGTGTTTGACAAAGTAAAAAATGACTTAAAATAATTCAGAAATCAAAGTAGGTCTCCTGTTACTTCTTTTTTGATCTAAAAGTTATTTCAGTTTAACTTTTTTATTTTTTATCTTAAAAGCAATTTTTTTAAAGTCAATTCAAACGGGCGCTTTTTTTATTTGTCTATGTTTGACTTTATACATGTCTTGAGAAAGTAACTAATTAAAATTTTAAGTTTACTATAACACTGTTGGAATATATTAAATTCTATACGTGTCTTGAGAAAGTAACTAATTAAAATTTTAAGTTTTCACTCATGTCATTAAATATGGATGGAGAACGTATTAAGTAGAGGAAGAGATGAGATGGCACACAAGGACAATAGAGTTTTCACTCCTCCCATCTATTTGTGGTCTTGGAATTCAACTTTATAGCGGCTAAGATGTGTAATGGTGGCCCATTTCTTACATCATCTATGGCAAATAATAAACTTCTGCGTATATAAAGTAAAGACCATACTTGTTTATTGGGTTTAATTTTGGGTGTACAAATTGGTTACATTCAAATTAAAAACAATATCGATTCCCAAACTTCCATCTTAATGGCTGTAGGTGTAAGGCACTGCACCATAAGGTTCATGGAACTTGAATCATCATCACTAATGAAATGTTTGCTCTTGTCTTCACCTCTATATAGAAAGCAATCAGTTCACTTCTCCAACTCTTCTACTCAAAGATATAATCAATGTTGTTCATTGTCGATGAATGGATGCCAAGGCGATTCAAGAGCTCCTATTGGAATCGTTGAAACTCGAACTTTGCCTGCAGTTTCTAGCCCTGCATTGGCCATGGAACGTCTCAATTCTGCCATCTCCGATATGATTAAGTCCGATCCTCCGCCTTACGATTCCGGCATTATTCGCCTTGAGGTGCCAATTGAAGAGCAGATTGAATCACTTGAGTGGCTTCATGCCCAGAACCATCTCCTCCTCCCTCGCTGCTTCTTCTCCGGTCGAAGAGTTGCTTCTGAAATGTGCATCAATGGAGCTTCTTCTCATTCTAAATTGGTCAGTGTAGCTGGTGTCGGTTCAGCTGTCTTCTTTACTCATTTACGTCCCTTCTCATTAGACGATTGGCGTGCTATAAGAAGGTTCCTCTCCAAGAAATGTCCACTAATTCGTGCTTATGGGGCAATCCGATTTGATGCAACAGCCAATATAGCTTCTGAATGGAGTGCTTTTGGCTCATTTTATTTCATGGTTCCTCAGGTTGAGTTTGATGAGCTTGAAGGAAGTTCAATTATTGCTGCAACTATTGCATGGGACAATGCTGCCTCATGGACATACCAGAGGGCAATAGATGCACTTCAGGCCACAATATGGCAGCTTTCCTCCGTTCTTATAACAGTGCAGAAGAAAAATCCCCATTCGCATATACTTGCCAATACACATGTGCCGGGTAAAGCGTCTTGGGACCATGCGGTTAACCGTGCTTTGCAAATAATAAGCAGAAATGACCCTGTACTGATCAAGGTGGTACTTGCTCGTAGCACCAGAGTTGTGACAGCTGCAGATATTGATCCACTAACATGGCTGGCTTGCTTAAAGGTTGAAGGAGAAAATGCATATCAGTTCTGTTTGCAACCTCCCCATTCGCCGGCATTCATTGGAAACACTCCAGAGCAGCTATTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCTGGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACAGGATTTACTATCCAGCGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTGGAGGCTGTGTGTTCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGAGTTCAACATCTTTACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAGTTTAAGATATTGTCATCCGTGCACCCTACTCCAGCAGTTTGTGGGTATCCTACAGAAGATGCACGGGCTTTTATTTCAGAAACTGAAATGTTTGACCGAGGAATGTATGCTGGTCCTGTTGGTTGGTTTGGAGGGGAAGAGAGTGAATTTGCGGTTGGAATAAGGTCGGCTTTGGTTGAAAAGGGTCTTGGCGCACTAATTTATGCGGGAACTGGGATAGTGGAAGGAAGTGATTCATCTCTAGAATGGGAAGAGCTAGAGCTAAAGACTTCACAGTTCACCAAATTGATGAAACTTGAGGCACCTCTTTTGACTAGAGGACAAAGTAGGATTATCAATCAGAATCAGAAAGGTTTGTCATGCCTGCCGCATCGTATTTAG
ATATTTCAAGAGAGATTACGAGCAGAGCACGAGTCGTTTAGGGCTGTTTTCGAGTCCTTCAGAACTGGTTCTGACAAGAGGCGGCCGCGGATATCTGGGCTTAATGCTGAAGATGAATAGTGCATCTGTAGATAGGGGTTTAAAATTGCATATTTGCTATTTTATGTTTTGCTAATCCTTTGCCATAGAGGATGACTGCCCAGTGTCTTACGCTGGGGGAGGGTTTAGCCATTTCTATTGTAATATAGTGTAATTCGTGTAGCAAAATAGGTAGTTGATGGCCTTGACTGGAGGGCTATATGCTATGGGTCCATTGCCTCTGTACTACTGGAAATTTTGGTAATGAAGGTTTTCAATGATAGAAGTGGTTCATTAAGCAATAAATGGATGTATGGAAGACAAATATCTTGTAATCATTGGCTTGGCTCATGAAAACAATTTTGATTCGGGATGTTTAAGAGCCCGTTTGGACTAGCTTAAAAGTTGGTCAAAGTTACTTTTAATTTTGTTTTTATTTCTGGAAGTGTTCGGTAAATATGAAACATAATTTAAAGAAGTGTTTGACAAAGTAAAAAATGACTTAAAATAATTCAGAAATCAAAGTAGGTCTCCTGTTACTTCTTTTTTGATCTAAAAGTTATTTCAGTTTAACTTTTTTATTTTTTATCTTAAAAGCAATTTTTTTAAAGTCAATTCAAACGGGCGCTTTTTTTATTTGTCTATGTTTGACTTTATACATGTCTTGAGAAAGTAACTAATTAAAATTTTAAGTTTACTATAACACTGTTGGAATATATTAAATTCTATACGTGTCTTGAGAAAGTAACTAATTAAAATTTTAAGTTTTCACTCATGTCATTAAATATGGATGGAGAACGTATTAAGTAGAGGAAGAGATGAGATGGCACACAAGGACAATAGAGTTTTCACTCCTCCCATCTATTTGTGGTCTTGGAATTCAACTTTATAGCGGCTAAGATGTGTAATGGTGGCCCATTTCTTACATCATCTATGGCAAATAATAAACTTCTGCGTATATAAAGTAAAGACCATACTTGTTTATTGGGTTTAATTTTGGGTGTACAAATTGGTTACATTCAAATTAAAAACAATATCGATTCCCAAACTTCCATCTTAATGGCTGTAGGTGTAAGGCACTGCACCATAAGGTTCATGGAACTTGAATCATCATCACTAATGAAATGTTTGCTCTTGTCTTCACCTCTATATAGAAAGCAATCAGTTCACTTCTCCAACTCTTCTACTCAAAGATATAATCAATGTTGTTCATTGTCGATGAATGGATGCCAAGGCGATTCAAGAGCTCCTATTGGAATCGTTGAAACTCGAACTTTGCCTGCAGTTTCTAGCCCTGCATTGGCCATGGAACGTCTCAATTCTGCCATCTCCGATATGATTAAGTCCGATCCTCCGCCTTACGATTCCGGCATTATTCGCCTTGAGGTGCCAATTGAAGAGCAGATTGAATCACTTGAGTGGCTTCATGCCCAGAACCATCTCCTCCTCCCTCGCTGCTTCTTCTCCGGTCGAAGAGTTGCTTCTGAAATGTGCATCAATGGAGCTTCTTCTCATTCTAAATTGGTCAGTGTAGCTGGTGTCGGTTCAGCTGTCTTCTTTACTCATTTACGTCCCTTCTCATTAGACGATTGGCGTGCTATAAGAAGGTTCCTCTCCAAGAAATGTCCACTAATTCGTGCTTATGGGGCAATCCGATTTGATGCAACAGCCAATATAGCTTCTGAATGGAGTGCTTTTGGCTCATTTTATTTCATGGTTCCTCAGGTTGAGTTTGATGAGCTTGAAGGAAGTTCAATTATTGCTGCAACTATTGCATGGGACAATGCTGCCTCATGGACATACCAGAGGGCAATAGATGCACTTCAGGCCACAATATGGCAGCTTTCCTCCGTTCTTATAACAGTGCAGAAGAAAAATCCCCATTCGCATATACTTGCCAATACACATGTGCCGGGTAAAGCGTCTTGGGACCATGCGGTTAACCGTGCTTTGCAAATAATAAGCAGAAATGACCCTGTACTGATCAAGGTGGTACTTGCTCGTAGCACCAGAGTTGTGACAGCTGCAGATATTGATCCACTAACATGGCTGGCTTGCTTAAAGGTTGAAGGAGAAAATGCATATCAGTTCTGTTTGCAACCTCCCCATTCGCCGGCATTCATTGGAAACACTCCAGAGCAGCTATTTCATCGGGACCGCCTCAGCATTTGTAGTGAGGCTTTAGCTGGAACACGGGCTAGGGGTGGATCAGAGCTTCTGGATCTTAATATAGAACAGGATTTACTATCCAGCGCTAAGGACCATAATGAGTTTGCTATAGTACGGGAGTGCATAAGAAGAAGATTGGAGGCTGTGTGTTCAAGCGTTATAATTGAACCAAAGAAAGCAATAAGAAAATTTACAAGAGTTCAACATCTTTACGCTCGATTGAGGGGGAGACTCCAGGCTGAAGATGATGAGTTTAAGATATTGTCATCCGTGCACCCTACTCCAGCAGTTTGTGGGTATCCTACAGAAGATGCACGGGCTTTTATTTCAGAAACTGAAATGTTTGACCGAGGAATGTATGCTGGTCCTGTTGGTTGGTTTGGAGGGGAAGAGAGTGAATTTGCGGTTGGAATAAGGTCGGCTTTGGTTGAAAAGGGTCTTGGCGCACTAATTTATGCGGGAACTGGGATAGTGGAAGGAAGTGATTCATCTCTAGAATGGGAAGAGCTAGAGCTAAAGACTTCACAGTTCACCAAATTGATGAAACTTGAGGCACCTCTTTTGACTAGAGGACAAAGTAGGATTATCAATCAGAATCAGAAAGGTTTGTCATGCCTGCCGCATCGTATTTAG
 Genomic sequence(s)
| unprocessed genomic sequence underlying each location of this mRNA |
| Related features
|
| Features that derive from this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| polypeptide | Solyc06g071030.2.1 | SL2.50ch06:43627534..43635332 | 581 | - | n/a |
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| Features this mRNA is a part of |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| gene | Solyc06g071030.2 | SL2.50ch06:43627535..43636469 | 8,935 | - | n/a |
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| Features that are parts of this mRNA |
| Type | Name | Location | Length | Strand | Phase |
|---|---|---|---|---|---|
| exon | exon:Solyc06g071030.2.1.1 | SL2.50ch06:43635201..43636469 | 1,269 | - | n/a |
| exon | exon:Solyc06g071030.2.1.10 | SL2.50ch06:43629917..43629974 | 58 | - | 1 |
| exon | exon:Solyc06g071030.2.1.11 | SL2.50ch06:43629535..43629645 | 111 | - | n/a |
| exon | exon:Solyc06g071030.2.1.12 | SL2.50ch06:43629046..43629130 | 85 | - | n/a |
| exon | exon:Solyc06g071030.2.1.13 | SL2.50ch06:43628524..43628621 | 98 | - | 2 |
| exon | exon:Solyc06g071030.2.1.14 | SL2.50ch06:43627773..43627865 | 93 | - | n/a |
| exon | exon:Solyc06g071030.2.1.15 | SL2.50ch06:43627535..43627639 | 105 | - | n/a |
| exon | exon:Solyc06g071030.2.1.2 | SL2.50ch06:43634925..43635119 | 195 | - | n/a |
| exon | exon:Solyc06g071030.2.1.3 | SL2.50ch06:43632791..43633011 | 221 | - | n/a |
| exon | exon:Solyc06g071030.2.1.4 | SL2.50ch06:43631908..43632025 | 118 | - | 1 |
| exon | exon:Solyc06g071030.2.1.5 | SL2.50ch06:43631690..43631806 | 117 | - | n/a |
| exon | exon:Solyc06g071030.2.1.6 | SL2.50ch06:43631430..43631576 | 147 | - | n/a |
| exon | exon:Solyc06g071030.2.1.7 | SL2.50ch06:43631131..43631205 | 75 | - | n/a |
| exon | exon:Solyc06g071030.2.1.8 | SL2.50ch06:43630975..43631043 | 69 | - | n/a |
| exon | exon:Solyc06g071030.2.1.9 | SL2.50ch06:43630076..43630194 | 119 | - | n/a |
| intron | intron:Solyc06g071030.2.1.10 | SL2.50ch06:43629975..43630075 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.11 | SL2.50ch06:43629646..43629916 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.12 | SL2.50ch06:43629131..43629534 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.13 | SL2.50ch06:43628622..43629045 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.14 | SL2.50ch06:43627866..43628523 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.15 | SL2.50ch06:43627640..43627772 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.2 | SL2.50ch06:43635120..43635200 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.3 | SL2.50ch06:43633012..43634924 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.4 | SL2.50ch06:43632026..43632790 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.5 | SL2.50ch06:43631807..43631907 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.6 | SL2.50ch06:43631577..43631689 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.7 | SL2.50ch06:43631206..43631429 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.8 | SL2.50ch06:43631044..43631130 | n/a | - | n/a |
| intron | intron:Solyc06g071030.2.1.9 | SL2.50ch06:43630195..43630974 | n/a | - | n/a |
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