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Solanum lycopersicum mRNA Solyc06g072300.2.1

mRNA details  
Name
Solyc06g072300.2.1
Type
mRNA
Length
5,143
Organism
Solanum lycopersicum
Description
ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi
Location(s)
SL2.50ch06:44570824..44579640
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0003676
Length
8817
Nb exon
21
Sifter term
GO:0019899
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc06g072300.2.1 ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi

GTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAGGTATACATTTCTGTGATTTTGATGTATCTCTGTTAGTTTAGCATTTTAGATCTAACTGGTTCAGCGTTTTCAATTGTTGTTTATGTTCAATTTAGGGTTTTTGCTTTACGCCGATTCTCCGATTGTTCTACTTTTAGCTGAGTTCACTTGATGATCAGATCTAACTGACTGTTGATTTGGTTATGATTTTTTTTCTCATTTATGCTGTTTTCTTTTTGCCTTGTTAAACTTTTTATGTGCCTTTTCCTAGTCCTTGTTAGCTCTTTTTGTGCTGTTGCGAAGATATGATGGGTAATTTTGAATGCTGTGTGTTTGAGGGGTTTATCTCTTGTATGTTCTGTTTTTGGTGTGTTAGTTGTATAGACTACTGTTAAGAAGTGAAATGTGGATTTCTTTCCTATTTTATCTTCTGGGCTCTATTTGAGTTCATTTTAATTTGATTGACCTGTTTTGACTTGGCATTGAGTTTAGGGAAGTGAATAAACTATTGACTGTTGTGGTCTTTGAAATGAAAGATAAGTAGAATGTTGAATATGACGCTCTAAGTTGTGTTGCTGCTGTTATGTGGAGTGTGAGGTTGTCAGAACATGTTCTTTATATTTTCCTGTATATTTTCGATTAGTAAAGTTTAGTTCTTGTTAAATTCTCACCTATATTTTTAACCTTATTTGTCTTGTTATCTATGTGTCACATGGATTTATTATTCTGTTCTATTTACATGTCCGGAGCAATCTGTTCGAGCATGAATTTGTCTTTTGATTTTGGGAAGGGCAAAATGCTTCGATAAATGATCTCTGAAGCAGAAATTAAACTAATAACACCGTGTCCGTTTTTATCACAAAACCCAGTTGGAAGCATTCTTGTCATCTTGTTTGAAAGGTGTATCTTTTATGTTTTTATTCTCTCCGGGATTGAGAAATGGAAATGGTATGAGCTTTTACTGTTTTGTTGTCCTATAGTACATTCTTCTTTTGAGCATCCACGGGGTGACCTAGTGGTCAATGGTGGGTCAAAGAACCATGAGGCTTCTGGTTCAAATCCCAGCAGCAGAGGCAAAAACACTAAGAGATTTCTTCCCATATGTCCAAACCTTGGTGGACCGAGTTATCCGGTACCTGTGTTGGTAGGAGGTAGTAAGTGCCTTCAGAATTAGTATAGGTGTGCATAAGTTGGCCCGGACAATCACTACTATAATGAAAAAAACGTTCTCTTTGATTGCCAAATGTTATGCCTTCAAAGCTTGGATATGTTCGTCTGTAATGAAAAAAACATTCTCTTTGATTGCCAAATATTATGCCTTCAAAGCTTGGATGTGTTCTTCTGTGAATTGTAACTGAATCTCGTTAATCCTATTATTTAGGACTATGTTTGCATGAGATCATACTGTGGATCTTTTGTTTCTGTTTGCTATAGAAGTTGCTTGAACACGTATTGATAGAGATTTTGTTTGTGATTTATTGGGGGGGGGGGGGTTTGGAGCCTATCAGTTGTAATCAGGGCTCATAGATTGATATCAGATATGTTTTTTGATGAGTTCATCAATTGTGTTTTTAAGGACAATGTGGCTGATCTCTACTTGAATATTTTTTAAGTGACAATTGTCTTTTTTTTTATAGTTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGATGTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAGGCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAGGTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTAGGACGAAGACAACCACTAGGTGAAGGTTTGGAGAGCTGGCGTGGTTTCTACCAAAGTATTCGTCCTACGCAGATGGGATTATCCCTGAATATTGATATGTCTTCCACAGCATTCATTGAGCCACTGCCGGTCATTGAATTTGTGAGCCAGCTTCTGAATCGGGATATCTCTTCTAGACCATTGTCTGATGCTGATCGGGTTAAGATAAAGAAGGCCCTGAGAGGTGTAAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGACTTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAGGTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAGACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGGCTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAGAAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATGATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATGGTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCGGTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAAGGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCGAGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAGGCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTGGTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAGGGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACAATTTTTCTGCTGATGGGCTGCAGTCTTTGACTAACAACCTTTGCTACACATATGCTAGGTGTACTCGTTCTGTCTCCATTGTTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAGAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAAGTGCCTTGTTATTTTCTTTTTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc06g072300.2.1SL2.50ch06:44571032..445778711,055-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc06g072300.2SL2.50ch06:44570824..445796408,817-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc06g072300.2.1.1SL2.50ch06:44577227..445796402,414-n/a
exonexon:Solyc06g072300.2.1.10SL2.50ch06:44574178..4457424972-n/a
exonexon:Solyc06g072300.2.1.11SL2.50ch06:44573297..44573419123-n/a
exonexon:Solyc06g072300.2.1.12SL2.50ch06:44573036..44573201166-2
exonexon:Solyc06g072300.2.1.13SL2.50ch06:44572686..44572945260-n/a
exonexon:Solyc06g072300.2.1.14SL2.50ch06:44572446..44572588143-1
exonexon:Solyc06g072300.2.1.15SL2.50ch06:44572272..4457233463-1
exonexon:Solyc06g072300.2.1.16SL2.50ch06:44572122..4457218564-n/a
exonexon:Solyc06g072300.2.1.17SL2.50ch06:44571842..44571977136-2
exonexon:Solyc06g072300.2.1.18SL2.50ch06:44571686..4457175974-n/a
exonexon:Solyc06g072300.2.1.19SL2.50ch06:44571509..4457160395-1
exonexon:Solyc06g072300.2.1.2SL2.50ch06:44576915..44577123209-1
exonexon:Solyc06g072300.2.1.20SL2.50ch06:44571407..4457143832-2
exonexon:Solyc06g072300.2.1.21SL2.50ch06:44570824..44571250427-n/a
exonexon:Solyc06g072300.2.1.3SL2.50ch06:44576685..44576834150-1
exonexon:Solyc06g072300.2.1.4SL2.50ch06:44576443..44576576134-2
exonexon:Solyc06g072300.2.1.5SL2.50ch06:44576187..44576296110-n/a
exonexon:Solyc06g072300.2.1.6SL2.50ch06:44575806..44575912107-1
exonexon:Solyc06g072300.2.1.7SL2.50ch06:44575438..44575576139-n/a
exonexon:Solyc06g072300.2.1.8SL2.50ch06:44575239..44575355117-n/a
exonexon:Solyc06g072300.2.1.9SL2.50ch06:44574407..44574514108-n/a
intronintron:Solyc06g072300.2.1.10SL2.50ch06:44574250..44574406n/a-n/a
intronintron:Solyc06g072300.2.1.11SL2.50ch06:44573420..44574177n/a-n/a
intronintron:Solyc06g072300.2.1.12SL2.50ch06:44573202..44573296n/a-n/a
intronintron:Solyc06g072300.2.1.13SL2.50ch06:44572946..44573035n/a-n/a
intronintron:Solyc06g072300.2.1.14SL2.50ch06:44572589..44572685n/a-n/a
intronintron:Solyc06g072300.2.1.15SL2.50ch06:44572335..44572445n/a-n/a
intronintron:Solyc06g072300.2.1.16SL2.50ch06:44572186..44572271n/a-n/a
intronintron:Solyc06g072300.2.1.17SL2.50ch06:44571978..44572121n/a-n/a
intronintron:Solyc06g072300.2.1.18SL2.50ch06:44571760..44571841n/a-n/a
intronintron:Solyc06g072300.2.1.19SL2.50ch06:44571604..44571685n/a-n/a
intronintron:Solyc06g072300.2.1.2SL2.50ch06:44577124..44577226n/a-n/a
intronintron:Solyc06g072300.2.1.20SL2.50ch06:44571439..44571508n/a-n/a
intronintron:Solyc06g072300.2.1.21SL2.50ch06:44571251..44571406n/a-n/a
intronintron:Solyc06g072300.2.1.3SL2.50ch06:44576835..44576914n/a-n/a
intronintron:Solyc06g072300.2.1.4SL2.50ch06:44576577..44576684n/a-n/a
intronintron:Solyc06g072300.2.1.5SL2.50ch06:44576297..44576442n/a-n/a
intronintron:Solyc06g072300.2.1.6SL2.50ch06:44575913..44576186n/a-n/a
intronintron:Solyc06g072300.2.1.7SL2.50ch06:44575577..44575805n/a-n/a
intronintron:Solyc06g072300.2.1.8SL2.50ch06:44575356..44575437n/a-n/a
intronintron:Solyc06g072300.2.1.9SL2.50ch06:44574515..44575238n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17857414%2Fdetails feature 17857414
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