Solanum lycopersicum mRNA Solyc07g005400.2.1

mRNA details  
Name
Solyc07g005400.2.1
Type
mRNA
Length
1,731
Organism
Solanum lycopersicum
Description
Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location(s)
SL2.50ch07:309636..314079
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0045449
Length
4444
Nb exon
8
Sifter term
GO:0030528
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc07g005400.2.1 Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding

ATAACTTATAATTCATTCATTTCTTCTATCTTTCTTTCTTCTCCTTTTAGAACCGAACTTTCACACACTGAAGAAATCGGCAAAATCTCAGAAGAAGAAGAAAATGCAAGCCATGAATTCACTTCTTAGTCAACAACAGCAGTCACAGATATCACTTCAAGACCTTCAAAATGGCGGAAATGGCGGTTCTACCGGTGGTGTTGGTGGTTTAAGTCAACACAGTATGGGTCACTCTCACTTTGATCCGACGTCGTCTCATGACGATTTTCTCGAACAGATTCTCTCTTCTGTTCCTTCTTCTTCTCCTTGGCCTGACCTTTCCAAATCATGGGATCCACATCACCATCTCTCATCTCCGCCGCATAACCCTAGCTCCGGCGAAGATCAACCTCCTTCTAATCCATTTCACTCACAGTTCCATTACGACGACCAAGCTTCTTCTCTACTAGCTTCAAAGCTCCGTCAACATCAGATCACTAGCGGCGGCGGCGCCGCTGCAGCTGCTAAAGCACTTATGCTACAGCAACAGCTTTTGCTCTCTAGAACACTCGCCGGAAACGGACTCAGGTCCCCAAACGGAGCTTCCGGAGATAACGGCCTCCTTTCCCTACCCCTAAACCTCAGTAATGGTGACCAAAACGACGGCGTCGCTAATCCAACTAATGACAATTCCGTTCAAGCTCTTTTCAATGGATTCACCGGATCTCTTGGTCAAACCTCCAATCAACCTCAACATTTTCATCATCCTCAGGGAGGATCGATGCAATCGCAGAGTTTCGGAGCTCCGGCGATGAACCAAACTCCGGCAGCAAGTGGTTCAGCTGGTGGCGGTGGAGGTTCAACGCCGGCAGCACAACCAAAACAACAACGAGTTAGAGCTCGTAGAGGTCAAGCTACTGATCCTCACAGCATAGCTGAAAGATTACGTAGAGAGAGAATTGCAGAGAGATTGAAGGCTTTACAGGAGCTGGTACCCAATGCCAATAAGACAGACAAGGCTTCAATGCTGGATGAGATCATCGACTATGTCAAATTCCTACAGCTCCAAGTCAAAGTTTTGAGTATGAGTAGATTAGGTGGTGCTCCCTTAGTTGCTGATATGTCCTCTGAGGGAAGAGGTGAAGGAAATGTTGGGAGGGGAGGTAACGGAAGGGCGTCGTCATCTTCAAACAACGAGACAATGACGGTAACAGAGCACCAAGTAGCTAAATTAATGGAGGAAGATATGGGATCGGCTATGCAGTATCTGCAAGGAAAAGGCTTATGCTTAATGCCTATATCCTTAGCTACAGCCATTTCCACTTCCACCACCAGAATCTCTAACAACCCACTACTTGCCCCCGAAGCCGGTGGCTCAACTTCTCCTACCCTATCGGCTTTGACTGTCCAGTCAGCCACCGCCGGAAAAGACGCCACTTCTCTATCGGAAACTTAAAACTCTCAAATCTGTTAACACCTTAACGGTAAAAACCACCTCTACCAAAATAAGGTTCACAAGACAGAAACATAAACGACGCAGTTTTCGGGTAGAGTTGTTTTAAGTAAAAGCTAACAAAAGGAACTCTCATGTTACTTTTTAGTTAATATGATCATCTTCTTTTTTTTTAAATGTTCCTATTTTAATTAACTACTTGGTCTAAGTACTTTTACTTGGAATAGTATTATATATATGTAATCATGATGTTTTGATGATATAGTGGATGTTTATGAATAAATTAAATTGATACAAAC
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc07g005400.2.1SL2.50ch07:309836..313783441+n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc07g005400.2SL2.50ch07:309636..3140794,444+n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc07g005400.2.1.1SL2.50ch07:309636..30972691+n/a
exonexon:Solyc07g005400.2.1.2SL2.50ch07:309816..310382567+n/a
exonexon:Solyc07g005400.2.1.3SL2.50ch07:310455..31054793+n/a
exonexon:Solyc07g005400.2.1.4SL2.50ch07:310639..310809171+n/a
exonexon:Solyc07g005400.2.1.5SL2.50ch07:310923..31098866+n/a
exonexon:Solyc07g005400.2.1.6SL2.50ch07:312336..31240166+n/a
exonexon:Solyc07g005400.2.1.7SL2.50ch07:312562..31261857+n/a
exonexon:Solyc07g005400.2.1.8SL2.50ch07:313460..314079620+n/a
intronintron:Solyc07g005400.2.1.1SL2.50ch07:309727..309815n/a+n/a
intronintron:Solyc07g005400.2.1.2SL2.50ch07:310383..310454n/a+n/a
intronintron:Solyc07g005400.2.1.3SL2.50ch07:310548..310638n/a+n/a
intronintron:Solyc07g005400.2.1.4SL2.50ch07:310810..310922n/a+n/a
intronintron:Solyc07g005400.2.1.5SL2.50ch07:310989..312335n/a+n/a
intronintron:Solyc07g005400.2.1.6SL2.50ch07:312402..312561n/a+n/a
intronintron:Solyc07g005400.2.1.7SL2.50ch07:312619..313459n/a+n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17866394%2Fdetails feature 17866394
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