Solanum lycopersicum mRNA Solyc07g006030.2.1

mRNA details  
Name
Solyc07g006030.2.1
Type
mRNA
Length
5,998
Organism
Solanum lycopersicum
Description
Protein TIF31 homolog (AHRD V1 *--- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical
Location(s)
SL2.50ch07:866918..880889
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
GO:0005488
Length
13972
Nb exon
23
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc07g006030.2.1 Protein TIF31 homolog (AHRD V1 *--- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical

TGGGAAAAAAATTAAAATATATATTCATTGAAGTTTTGATTGAAGGGAGAAAAAATGGCTCCAAAAACAGGAAAAGCTAAGCCACACAAAGCAAAGGGAGAGAAGAAGAAAAAAGAAGAGAAAGTTCTGCCAAATGTTATAGAGATAACGGTAGAAACACCCAACGACTCACAAGTGATGCTTAAGGGGATATCAACGGACAAGATTTTAGATGTGAGAAAGCTCTTAGCCGTCAATGTAGAGACATGTCACGTGACCAATTACTCCTTGTCACATGAGGTGAGAGGAACAAGGCTAAAAGATACGGTGGAAATTGTGTCGCTAAAACCGTGCCACCTCAGCTTAGTCGAAGAGGATTATACAGAAGAACAGTCAGTGGCGCATATTAGAAGACTTCTCGACATAGTTGCATGCACCACTTCATTCGCCGGTTCATCTTCTTCGACCAAACCCACCAATCGAACCGGTACTGAACCCGGTTCAGAAAATGCACTCTCCGAACCTAAATCAGGCAAGACCAAACCTCAGGAACCGAAAAAGGCCGGCGCTAAACCGTCAAAGCCAGATGGCGTCGCCGCCGTATGTGACGGCGTCGATGCCGGTGAAGCGGCGGAGAAAGGTGACCCCGCGATGATGTGTCCTCCGCCGCGACTAGGACAGTTCTATGATTTCTTCTCGTTTGCTCATCTCACTCCTCCGATCCAATATATTAGGAGATCAAGTCGACCATTCCTTGAGGATAAAACAGAAGATGATTTTTTCCAAATAGATGTCCGAATCTGCAGTGGCAAGCCAACAACAATTGTTGCTTCTAGGACAGGTTTCTATCCTGCTGGAAAACGCGCTCTTTCAAGTCACTCTTTGGTTGGATTGTTGCAACAATTAAGTCGAGTTTTTGATGCTGCATACAAGGCTCTCATGAAAGGATTCACTGAGCATAATAAGTTTGGGAATCTTCCTTATGGTTTTCGAGCAAACACATGGGTTGTCCCTCCTTTTGTTGCTGACAATCCAGCTACTTTTCCTCCACTTCCCATGGAAGATGAGAATTGGGGAGGAAACGGAGGTGGACAGGGAAGAGATGGTAAGCATGATCATAGGCCGTGGGCGAAGGAATTTGCGATCCTGGCTGCAATGCCTTGTAAAACAGCGGAAGAAAGGCAAATTAGAGATAGGAAAGCGTTTCTACTGCACAGTCTATTCGTCGATGTATCAGTTCTCAAAGCAGTTGCTTCCATAAAGCATCTAGTGGACAACAGCTCTAGTTGTACAATTCCATACGAGGAAAAAATTGGTGATCTTCTTATCAGTGTGACAAAAGACATTCCCGATGCGAGCAAGAAATTGGACAACAAAAACGATGGCATTCAGGTGCTAGGCATGTCGCCTGAGGATCTTGCAAAGAGAAACTTACTAAAAGGCATAACTGCAGATGAGAGTGCAACTGTTCATGATACTTCTACCTTGGGTGTAGTGGTGGTTAGACATTGTGGCTACACAGCTATAGTAAAAGTTGCAGCTGATGTGAACTGGGGGACAAATCTCATTCCTCTGGATATTGAAATAGATGACCAGGCAGAGGGAGGTGCAAATGCATTGAATGTTAACAGCTTGAGAATGCTATTGCACAAGTCATCAACTCCTCAGCCATCTAACCAAGTACATAAATTACAAGGCGCAGATGTCGAAGACGTTCTAGCTACTAAGTCTTTAGTAAGACAAGTGCTCGACGATAGCTTGCAGAAGTTACAGGAAGAAGACAGTATACAAGTGAAATCTATTAGATGGGAGCTGGGTGCATGTTGGGTGCAACATCTGCAAAATCAAGCCTCCGGGAAAGTTGAGTCTAAGAAAACTGATGAAGCTAAAGTAGAGCCAGCGGTAAAGGGTCTTGGAAAGCATGGTGGTCTGCTGAAGGAAATTAAGAAGAAGTCAGATGACAAGAGCAGCAAAGCCAGTTCAGGGAACGAAGTTTCTTCAGGTGATGCTAACAATAAAGAGCTAGAGAAGCTAGACGAGGAAATGGAAATTCTTTGGAAAAAGGTGCTACCTGAAGCAGCATATTTGCGCCTAAAGGAATCAGAAACTGGTCTTCACCTTAAGTCACCCGACGAGTTGATCAGTATGGCACATAAATACTACGCTGATACTGCCCTTCCAAAACTGGTTGCTGATTTTGGGTCACTGGAGCTTTCACCCGTCGATGGAAGGACACTGACAGATTTCATGCACACCAGGGGTTTGCAAATGTGCTCCTTGGGGCGCGTGGTGGAACTTGCAGACAAACTTCCTCACGTTCAATCTCTTTGTATTCACGAGATGGTTGTTCGAGCTTACAAACACATACTGCAGGCTGTTGTGGCAGCAGTTGATAATATTGCTAATGTGGCTGCATCAATAGCTTCTTGTTTAAATGTATTGCTTGGGACTCCGTCTGCAGAAAATGGTGATTCAGATGATGACTTGAAATGGAAGTGGATAGAAACTTTTCTTTTGAAGAGGTTCGGGTGGCAGTGGAAGGATGAAAGTCGGGAGGATCTGAGAAAATTTGCCATTCTTCGAGGTCTTTGTCATAAGGTAGGACTTGAGCTTGTTCCCAAAGACTATGATATAGACTCTCCATTTCCTTTCAAGAAGTCGGATATCATAAGCATGGTCCCCGTGTACAAGCATGTTGCATGCTCATCAGCGGATGGGCGTACGCTGCTGGAATCATCGAAAACTTCTCTGGATAAAGGCAAACTGGAGGATGCTGTAACTTTTGGAACTAAGGCACTCTCAAAACTCGTTTCTGTATGTGGTCCTTACCATCGAATGACAGCAGGTGCATACAGTCTCTTAGCTGTGGTACTCTACCACACTGGGGATTTTAATCAGGCTACTATCTATCAACAAAAAGCTTTGGATATTAATGAAAGAGAACTTGGACTTGACCACCCAGATACAATGAAGAGTTATGGAGATTTAGCAGTTTTCTACTACCGACTTCAACACACAGAGTTGGCATTAAAGTATGTCAATCGTGCCCTCTATCTTTTGCATCTTACATGTGGACCTTCTCATCCAAATACTGCTGCAACATATATAAATGTTGCAATGATGGAGGAAGGTCTCGGAAATGTCCATGTTGCACTCAGGTACCTTCACGAGGCTCTTAAGTGTAACCAGAGACTTCTTGGAGCTGATCATATTCAAACTGCTGCCAGCTATCATGCTATTGCAATTGCTCTTTCTTTAATGGAAGCATACTCCTTGAGTGTTCAACATGAGCAAACTACACTTCAGATACTGCAAGCTAAACTTGGACCCGATGATTTACGTACTCAGGATGCTGCGGCATGGCTTGAGTATTTTGAATCTAAAGCACTTGAGCAGCAAGAAGCTGCACGAAATGGTACCCCGAAGCCTGATGCTTCTATCTCTAGCAAAGGCCATCTAAGTGTCTCGGATTTGTTGGATTACATAGCTCCAGATGCTGAGATGAAAGCTAGAGAAGCGCAAAAGAAGCAAGCTCGTGCAAAGGTTAAAGGCAAAGCAGGACAAAATGGGGGATTAGCTACCGATGAATTTGAGAAGGATGAACTTCTTTCTCCAACTAGTCCTGTTGTGGAGAACTCCAGTGATAAAGAGAACAAGTCGGAATTAGAGAACAAATCAGAATTGAAGATTGCAGAACCCACACCTAAGGAATCTGAACACATTTTGATAGAGCAGACACTACTGGAGAAAAATGACGATGTGATATTAGAGGATACCTCTGAGGAAGGATGGCAAGAGGCTTTACCCAAAGGTCGTTCAACAATGGGGCGTAAGATTTCTAGTTCTAGGAGACCTAACCTTGCAAAACTTAACACCAACTTCACGAATGCTTCCCATTTACCAAGAGCTCGAGGTAAAACCACTAATTTTCCTTCTCCAAGATTGACTCCAAATGAATCTGCGGCATCATCTGGGCTATCTCCTGCTTCAAAGAAGTTTGTGAAGAGTGCTAGTTTCAGCCCTAAGTTAAACAGCGCTGCTTCACCATCTGGTGGTACTGAGAGATCTTCTAAGCCCAAATCGGCACCGCTCACCCCTGCTCAAGCTGAACAAGTTGTCAAAACTAATTCAATTGTCAGCTCAATCAGTGTTCAGGCAGCTGGAAAACTGTTTTCTTACAAAGAAGTTGCTTTAGCTCCACCTGGTACCATTGTGAAAGCAGTGGCAGAGCAATTGCCAAAGGATAGTAATTCAGAACAAAACAAGGAGACTGTGGCAACTGATTCAACTCTACCGACAACAGCGAGGACCAATGATGGAGAAAAGGCTCAGAAAGTCGGTGAAGAGAAGCAACATGATGATTCCGGTGAGAAAACCAATCAAGCAGTCAATGACGCTCAACAAAGTAAAGAGAAAGCACCTGTATCATCCGAATCTTCTGAGGGGACAAAAGCTGACACTTCTGGGGAGATGGACGGAGTTGTCACAGCTTCTACAAATAGCTCTATTCCGGGTATCCAAAATAATGGTTCCAGTGATTCAGATGCTACTTCCAAAGTCAATATTCTGGAAAGCAAAGCTGCTACTGATTTAGTGACAGAGAAGGATGCTTGTCTTACAAATGAAGGAGCTGCAGTTAAGGAAAAGAATGATGATGAACCTGGTGATCTAGGAAGTGTCACATTGCCAACTGGAGTAGATAAAGATATTACTAGCAATGCTAGTACCGTGCCTACTGAATCAGACCAGCAAGGTGATTCTGAGACTGTAAAAGAAGCATCCAAGAAACTTTCGGCAGCTGCACCACCATTTAATCCATCACCCATTCCAGTTTTTGGCACTATCCCAGCACCAGGTTTCAAGGAGCATGGAGGAATATTGCCCCCTCCTGTGAATATCCCTCCTTTGCTTCCTCTGAGTCCTGTTCGTAGATCACCACATCAGTCAGCAACAGCACGAGTTCCGTATGGTCCACGCTTGTCAGGTGGCTATGGTAGGTCTGGAAATCGAGTTCCACGAAACAAGCCTGCTTTTCTCAATGCTGAACCTAATGGGGATGCCAGCCATTTCGCTATTCCTAGAATCATGAACCCACATGCAGCTGAGTTTGTCCCTGGACAACCATGGGTTCCAAATGGCTTTCCGGTTGCTCCAAATGGTTACATGGCTTCACCAAATGGTATGCCTGTTTCACCAAATGGATACCCGATATCACCAAATAGCATACCAGTATCTCCAGATGGTTCTCCAGCATCCTTGAACAGTACACCAGTGACTGAAGACGGAATTTCAATATCTCCAGTTGAAGCAGGAGAATCCCCTTTAGCTGTGACTGTGGAAGAAGCTGCTGAAAATCACGATAAAGCGATGGCTGGTGGGACTGAAGTGGATACCTCCAGTAGTTTGGTAACTGATGAGACAGAAAGTCAGCAGATCATGCAGGCTCAGGAAGAAGATGTAGAAAAACTACATGACATTCCTAACGATGATGAGAAATCACCATGTGAAAATGGAGAAATGTCTGTAGATACTCCTGCACTATCTGATGAGATTACTGCTTCAAAAGAAACGTGTAATACTGTCGTTCTTGAGGAGAAAGGAACCAAGCGTTGGGGAGATTATAGTGACGGTGAAAATGAGGTTGTTGAGGTAGCAAGTTGAAGAGATACTACTTTCATGTTAAAAGCGTTGACCAGCTCTTCGTCAATTGGTTTTTTGTGTCTTTTACTTTACAGCTGACCGGGTATCTCTGAAGGCTAGAAACTGAACCACAGAGCTGTTTGTTTTCCTGCTTAGATGTCCGGTGAAGATCAAAACCAAGTACTGCACTGACTTCCTGGTACAGTTTGACTTGGTTGAAGCAAACTCATTGGAATTTTTATTAGCACGACCACAGGTTGCTGCACAGAGAAAAAATAATTGTATCGAATCCTAAAGGAACTGAGTCGTATTTGTTTATTTCACTTCTCTCTTCAATTTTGTGCACTCGAACAGAAGATGCAAAAGATTGCAACTCTTT
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc07g006030.2.1SL2.50ch07:867275..8808351,862-n/a
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Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc07g006030.2SL2.50ch07:866918..88088913,972-n/a
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Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc07g006030.2.1.1SL2.50ch07:880766..880889124-2
exonexon:Solyc07g006030.2.1.10SL2.50ch07:874082..874239158-1
exonexon:Solyc07g006030.2.1.11SL2.50ch07:873477..873969493-n/a
exonexon:Solyc07g006030.2.1.12SL2.50ch07:873250..87331263-n/a
exonexon:Solyc07g006030.2.1.13SL2.50ch07:873062..873163102-n/a
exonexon:Solyc07g006030.2.1.14SL2.50ch07:872497..872805309-n/a
exonexon:Solyc07g006030.2.1.15SL2.50ch07:872319..87241193-n/a
exonexon:Solyc07g006030.2.1.16SL2.50ch07:872126..872227102-n/a
exonexon:Solyc07g006030.2.1.17SL2.50ch07:871945..872049105-n/a
exonexon:Solyc07g006030.2.1.18SL2.50ch07:871478..871611134-1
exonexon:Solyc07g006030.2.1.19SL2.50ch07:870087..870270184-n/a
exonexon:Solyc07g006030.2.1.2SL2.50ch07:879806..87986762-n/a
exonexon:Solyc07g006030.2.1.20SL2.50ch07:869859..869990132-n/a
exonexon:Solyc07g006030.2.1.21SL2.50ch07:869664..869776113-1
exonexon:Solyc07g006030.2.1.22SL2.50ch07:869488..86956982-n/a
exonexon:Solyc07g006030.2.1.23SL2.50ch07:866918..8693932,476-n/a
exonexon:Solyc07g006030.2.1.3SL2.50ch07:879225..87931793-n/a
exonexon:Solyc07g006030.2.1.4SL2.50ch07:877750..87782273-2
exonexon:Solyc07g006030.2.1.5SL2.50ch07:876635..876988354-2
exonexon:Solyc07g006030.2.1.6SL2.50ch07:875642..87570665-n/a
exonexon:Solyc07g006030.2.1.7SL2.50ch07:875107..875238132-n/a
exonexon:Solyc07g006030.2.1.8SL2.50ch07:874942..87498342-n/a
exonexon:Solyc07g006030.2.1.9SL2.50ch07:874344..874850507-n/a
intronintron:Solyc07g006030.2.1.10SL2.50ch07:874240..874343n/a-n/a
intronintron:Solyc07g006030.2.1.11SL2.50ch07:873970..874081n/a-n/a
intronintron:Solyc07g006030.2.1.12SL2.50ch07:873313..873476n/a-n/a
intronintron:Solyc07g006030.2.1.13SL2.50ch07:873164..873249n/a-n/a
intronintron:Solyc07g006030.2.1.14SL2.50ch07:872806..873061n/a-n/a
intronintron:Solyc07g006030.2.1.15SL2.50ch07:872412..872496n/a-n/a
intronintron:Solyc07g006030.2.1.16SL2.50ch07:872228..872318n/a-n/a
intronintron:Solyc07g006030.2.1.17SL2.50ch07:872050..872125n/a-n/a
intronintron:Solyc07g006030.2.1.18SL2.50ch07:871612..871944n/a-n/a
intronintron:Solyc07g006030.2.1.19SL2.50ch07:870271..871477n/a-n/a
intronintron:Solyc07g006030.2.1.2SL2.50ch07:879868..880765n/a-n/a
intronintron:Solyc07g006030.2.1.20SL2.50ch07:869991..870086n/a-n/a
intronintron:Solyc07g006030.2.1.21SL2.50ch07:869777..869858n/a-n/a
intronintron:Solyc07g006030.2.1.22SL2.50ch07:869570..869663n/a-n/a
intronintron:Solyc07g006030.2.1.23SL2.50ch07:869394..869487n/a-n/a
intronintron:Solyc07g006030.2.1.3SL2.50ch07:879318..879805n/a-n/a
intronintron:Solyc07g006030.2.1.4SL2.50ch07:877823..879224n/a-n/a
intronintron:Solyc07g006030.2.1.5SL2.50ch07:876989..877749n/a-n/a
intronintron:Solyc07g006030.2.1.6SL2.50ch07:875707..876634n/a-n/a
intronintron:Solyc07g006030.2.1.7SL2.50ch07:875239..875641n/a-n/a
intronintron:Solyc07g006030.2.1.8SL2.50ch07:874984..875106n/a-n/a
intronintron:Solyc07g006030.2.1.9SL2.50ch07:874851..874941n/a-n/a
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Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17867203%2Fdetails feature 17867203
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