Notice: Due to a wide-spread power outage in the area, SGN was unavailable early on Sunday. We apologize for the inconvenience.

Solanum lycopersicum mRNA Solyc07g016180.2.1

mRNA details  
Name
Solyc07g016180.2.1
Type
mRNA
Length
4,035
Organism
Solanum lycopersicum
Description
Auxin response factor 19 (AHRD V1 ***- D9IA29_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor
Location(s)
SL2.50ch07:6386861..6394308
Ontology term(s)
GFF source
ITAG_eugene
From BOGAS
1
Interpro2go term
  • GO:0005634
  • GO:0006355
  • GO:0046983
Length
7448
Nb exon
13
Sifter term
GO:0046983
mRNA sequence spliced mRNA sequence, including UTRs 
>Solyc07g016180.2.1 Auxin response factor 19 (AHRD V1 ***- D9IA29_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor

AAGAGAAAGAGAAAAAGGGGCAAAAGCCATTTCCAAAGAGAAAAACAGAGCAAATTAGAGAGAGAAAAAGATAGTGTTTATGTGTTGTGTGCTCTGTGTCTGGTAAAAAAGGGGCCAATTTAAAGCTAAATTGCAGCATTTGGTCTCTCCAATTCTCTACACACACCTCTTTATTCACAAAACCCTTACTTTGTCTCCTTCACCCTTCTTATTTTCTCGTTTTCCGGTCACCGGAAAACGCACAATCGTCTTCCCGTCAGATCTAAAAGCTTAAAAAAAATGAATCTCCGGTGAAAATAATATCTGAAGTTTAATTTCAATTTTTTTTTGTTGATCGGAGAAAAGATAGAAAAATGAAAACACCGGTGAATACTGCCGGAGTTCAGCAGCAGCATACTGTTAACGGGAATCCTGGTGAAGTGGAGAAGAAAAGCATAAATCCAGAGCTATGGCAGGCCTGCGCCGGTCCTCTGGTGAACTTACCGGCAGCTGGGACCCACGTTGTTTATTTTCCACAAGGCCACAGTGAACAGGTTGCGGCATCTATGAAGAAAGATGTAGATGCCCAAATACCAAACTATCCAAACCTTCCATCAAAGTTAGTTTGTCTCCTTCACAATATTACCCTGCATGCGGATCCAGAAACAGATGAAGTTTATGCACAAATGACACTGCAGCCAGTTCCTTCATTTGATAAGGAGGCATTGTTGAGATCAGATTTGTCTATGAAAGCAAATAAACCACAAACAGAATTTTTTTGCAAGACCTTGACTGCCAGTGATACAAGCACACATGGGGGTTTTTCCGTCCCTCGACGTTCTGCAGAAAAAATATTCCCGCCTCTGGATTACTCAATGCAACCACCTGCTCAAGAACTTGTGGCTAGAGACTTGCATGATAATTTGTGGACCTTCCGCCATATTTATCGCGGGCAACCCAAACGCCATTTGCTAACGACAGGGTGGAGCCTCTTTGTCAGTGGGAAGAGGCTCTTTGCTGGTGACTCAGTTTTGTTTATCAGGGATGAAAAACAGCAGCTTCTACTTGGAATTAGGCGGGCAAACAGACAGCCAACCAACTTATCATCATCGGTGTTGTCAAGTGACAGCATGCATATTGGTATCCTAGCAGCTGCTGCCCATGCAGCTGCAAACAACAGCCCATTCACTGTGTTTTATAACCCAAGGGCAAGTCCTTCAGAATTTGTCATCCCTTTAGCCAAGTATTACAAGGCAACTTATAGCAGTCAAGTATCACTTGGCATGCGATTCCGCATGATGTTTGAGACAGAAGAATCAGGAACTAGAAGGTATATGGGCACAATTACTGGCATCAGTGATCTTGATCCAGTGAGGTGGAAGAACTCACAGTGGCGCAACTTGCAGGTTGGTTGGGATGAGTCAACTGCTGGGGAGAGGCGTAACCGAGTCTCAATTTGGGAGATTGAACCAGTAACAGCACCGTTTTTCATCTGTCCTACTCCACCGTTCTTTAGATCAAAGCGGCCAAGGCTACCTGGAATGCCAGATGATGATTGTTCTGATCTGGATGGCCTGTTTAAGAGGACAATGCCATGGCTCGGTGATGACTTTGGCATGAAGGATCCGCAAGGTCTTCCAGGCCTGAGCTTAGTCCAATGGATGAACATGCAACAGAATCCTTCTTTGGCTAACTCAATGCAACCGAACTACCTGCATTCTTTGTCTGGTTCCGTGCTACAGAATGTAGGAGGTGGAGCAGACCTCTCGCGTCAGTTATGTCTACCAGCACCTCAGCTTCCTCAGCAGAATACTTTGCAGTTTGGTTCCCAAAGGCCAACCCAACAGGTTCAGCAGCTCGACCAGCTTCAGAAGATACCAACTACCACATTGAGTCCAGCAGGTTCCATTATGCAGCCGCAGCAACAGTTGTCGGATATCAGTCAGCAACCAAGACAGAACCTAATTAACCAATCAGTACCTACAAACCATGTTCAGGCCCAGCTTTTGCAAGCTCAAAGTCTTGTGCAATCTCAGAATGTCCTACAGCAACAACAATCATTTCAAAATCAGCTGCAAAGGAATCTTCCTCAGAACCTGCCGCAGCAGCAACAGATTATGAATCAAACTCAGCAGCAAAGTTTCATGCAACCCCAGCCGAGTGATCCACTTAACCAACAGCTGCATTTCTCTGATAACCAATTACAGATGCAGCTTTTGCAGAAGCTGCAGCAGCAGTCACTTCTAGCTCAACAATCTTTACTGCAACAACCGTCCCAGCTTATGCCAATCCAAGATCAGCAGAAGCACTTAGATGTATCACAGAACTTTTCTAGGTCACTTGCAACAAGCCAGATGCTAGATATGTCTCAAACCACGTCCAACTCCACGTCTCTTTCCCAGCCACAAGTTGCCCAGCAGCAAATGACGATAAATAATAGCCAGTCTAATCTTCGTTTTGCCCAGCCAAATCAGCATATGAAGCAACAGCAGCAGCAGCAGCAACCAGGAATTCTACCAGAAATACCTGGACAAGTTGGCCAGATTCTACCACCAACAACTAATCAGCTTTCGGCAAACTGCAGTAGCTTCTTAACAGGAGCTGTAGGTGGAGGCCAGTCGGTGGTTACGGATGATATTCCATCATGTTCCACCTCACCATCTACCAACAACTGTCAAAATGTAGTTCAGCCAATTATGAATGGTAGGATCCATCGAGGCACAGCTGCAGCGGAGGAAACAACCCAGTCTTCTCTACCCCTTTTGAGTTCCAGTGGATTAGAAGCCATGTCCCCTAATAGAAATCTAGTTAAAGATTTGCAGCAAAAACCTGATGTGAAGCCCTCAATGAATATCTCCAAGAGCCAGAATCATGGGTTTTCAACTCCTCAAACATACCTTAATAATGCAGTTCCCCAGATGGATTATTTGGATAGTTCATCTTCAGCAACCTCTGTCTACTTTTCTCAAAATGATGTCCAATTGCAGCAGACGACTAACCCGATGTCATTCAGTTCTCAAGCGATCGTATTTAGAGATAGTCAAGATGGAGAAGTTCAAGGTGACCCCAGACATAGTGTTGCTTTTGGAGCAAACATGGACAATCAGTTAGGAATATCCATGATGCCTGATTCTTTGATCACAAATAGCTTGGTGGGGTCAAGGAAAGATGTATCAAATAATATCTCATCAGGTGGAGGCATGCTTTCCAGCTATGAGAATCCCAAGGATGCACAGCCTGAACTATCATCCTCAATGGTCTCCCAATCATTTGGAGTTCCTGATATGGCCTTCAATTCAATTGATTCTACCATAAATGAAGGCAGCTTCATGAATAGAGGTGCCTGGGCCCCACCACCTCAAATGCCTCGAATGCGGACGTTTACCAAGGTACACAAGCGTGGTGCTGTTGGAAGATCAATCGACATCGCACGTTACTCAGGCTATGAAGAGCTTAAACAAGATTTAGCTCGTAGATTTGGTATAGAGGGACAACTGGAGGATAGACAAAGAATAGGATGGAAGCTTGTATATGTGGATCATGAGAATGACGTACTGCTTGTTGGCGATGATCCTTGGGAGGAATTCGTGAACTGTGTCCGTTGCATCAAGATTCTTTCTCCACAAGAGGTCCAACAAATTAGCTTGGATGGAGATTTTGGGAATAATGTCCAAAATCAAGCTTGTAGTAGTTCAGACGGAGGAAATGTGTAATTTAAATGGCTTAAGTTCCATTTTTACAAACCTCCCACGGTTGGTTAATTCTTCCCCTTATACACGCGTAATCAGCTCTTCCATGGTTGAAAAGAGCTGTCGCTAATATCTGACTGGAACTAAGCGGGAAGTGGGTGTGCTTCATCACCTCACCGGTCCAAGTATGGTAGCTCGTGTTACAAGGGGAGAGAACTGGTCAAGCTTAGGTAACCATAGAAGCACTAGATGCATACTACAAGAGTACTTAAATTTTCTTGTTTCCTTTGCATGAAAAGTTTCTTAAGAGTATTTTCACTGTAAAATTAAAATCCTTGAAATATGTATGTAGTGTTGGAATGTATAG
Genomic sequence(s) unprocessed genomic sequence underlying each location of this mRNA 
Related features  
Features that derive from this mRNA 
TypeNameLocationLengthStrandPhase
polypeptideSolyc07g016180.2.1SL2.50ch07:6387203..63939551,113-n/a
Add items to a list:

Features this mRNA is a part of 
TypeNameLocationLengthStrandPhase
geneSolyc07g016180.2SL2.50ch07:6386861..63943087,448-n/a
Add items to a list:

Features that are parts of this mRNA 
TypeNameLocationLengthStrandPhase
exonexon:Solyc07g016180.2.1.1SL2.50ch07:6393889..6394308420-2
exonexon:Solyc07g016180.2.1.10SL2.50ch07:6390182..6390323142-2
exonexon:Solyc07g016180.2.1.11SL2.50ch07:6387906..63897461,841-n/a
exonexon:Solyc07g016180.2.1.12SL2.50ch07:6387617..6387807191-1
exonexon:Solyc07g016180.2.1.13SL2.50ch07:6386861..6387336476-n/a
exonexon:Solyc07g016180.2.1.2SL2.50ch07:6393194..6393306113-n/a
exonexon:Solyc07g016180.2.1.3SL2.50ch07:6391941..639203999-n/a
exonexon:Solyc07g016180.2.1.4SL2.50ch07:6391792..639184857-n/a
exonexon:Solyc07g016180.2.1.5SL2.50ch07:6391449..6391604156-n/a
exonexon:Solyc07g016180.2.1.6SL2.50ch07:6391279..639136385-2
exonexon:Solyc07g016180.2.1.7SL2.50ch07:6391090..639118091-1
exonexon:Solyc07g016180.2.1.8SL2.50ch07:6390691..6390855165-1
exonexon:Solyc07g016180.2.1.9SL2.50ch07:6390407..6390605199-n/a
intronintron:Solyc07g016180.2.1.10SL2.50ch07:6390324..6390406n/a-n/a
intronintron:Solyc07g016180.2.1.11SL2.50ch07:6389747..6390181n/a-n/a
intronintron:Solyc07g016180.2.1.12SL2.50ch07:6387808..6387905n/a-n/a
intronintron:Solyc07g016180.2.1.13SL2.50ch07:6387337..6387616n/a-n/a
intronintron:Solyc07g016180.2.1.2SL2.50ch07:6393307..6393888n/a-n/a
intronintron:Solyc07g016180.2.1.3SL2.50ch07:6392040..6393193n/a-n/a
intronintron:Solyc07g016180.2.1.4SL2.50ch07:6391849..6391940n/a-n/a
intronintron:Solyc07g016180.2.1.5SL2.50ch07:6391605..6391791n/a-n/a
intronintron:Solyc07g016180.2.1.6SL2.50ch07:6391364..6391448n/a-n/a
intronintron:Solyc07g016180.2.1.7SL2.50ch07:6391181..6391278n/a-n/a
intronintron:Solyc07g016180.2.1.8SL2.50ch07:6390856..6391089n/a-n/a
intronintron:Solyc07g016180.2.1.9SL2.50ch07:6390606..6390690n/a-n/a
Add items to a list:
Related viewsNone found
http%3A%2F%2Fsolgenomics.net%3A8080%2Ffeature%2F17871587%2Fdetails feature 17871587
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)